View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8334_low_11 (Length: 329)

Name: NF8334_low_11
Description: NF8334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8334_low_11
NF8334_low_11
[»] chr5 (5 HSPs)
chr5 (139-188)||(29985605-29985654)
chr5 (102-151)||(29985675-29985724)
chr5 (200-314)||(30067526-30067642)
chr5 (184-262)||(30042993-30043074)
chr5 (55-92)||(29985814-29985851)
[»] scaffold0024 (1 HSPs)
scaffold0024 (37-89)||(47955-48007)
[»] chr4 (1 HSPs)
chr4 (37-89)||(53231231-53231283)


Alignment Details
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 139 - 188
Target Start/End: Complemental strand, 29985654 - 29985605
Alignment:
Q  139 aaatcatcgatacgaacatggttgatttgtactattgatttgcaccaaat 188  Q
    ||||||| ||||| ||||| ||||||||||||||||||||||||||||||    
T  29985654 aaatcattgatactaacatcgttgatttgtactattgatttgcaccaaat 29985605  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 102 - 151
Target Start/End: Complemental strand, 29985724 - 29985675
Alignment:
Q  102 ttttaagaactttttataatgttctaaatatacctaaaaatcatcgatac 151  Q
    ||||||||||||||| || |||||||||||||||| |||||||| |||||    
T  29985724 ttttaagaactttttgtattgttctaaatatacctgaaaatcattgatac 29985675  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 314
Target Start/End: Original strand, 30067526 - 30067642
Alignment:
Q  200 aaggtgtgtgttgtgc-gtgtgttattcatttcattgacatccatgtc---tggagactcaaatgt---ctattaaagtacgtatataaacaacaagcaa 292  Q
    |||||||||||||||  |||| ||||||||||| ||||| ||||| ||   |||||||||||||||   |||||||| ||    ||||||||||||||||    
T  30067526 aaggtgtgtgttgtgttgtgtattattcatttccttgac-tccatatccaatggagactcaaatgttggctattaaaata----tataaacaacaagcaa 30067620  T
Q  293 tatacattaccttattttatac 314  Q
    ||| ||||| ||||||||||||    
T  30067621 tatccattagcttattttatac 30067642  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 184 - 262
Target Start/End: Original strand, 30042993 - 30043074
Alignment:
Q  184 caaatcattgatcataaaggtgtgtgttgtgcgtgtgttattcatttcattgacatccatgt---ctggagactcaaatgtc 262  Q
    ||||||||||||||| ||||  |||| || |||||| |||||||||||| |||| |||||||    ||||||||||||||||    
T  30042993 caaatcattgatcatgaaggcctgtgatgggcgtgtattattcatttcaatgacctccatgttcaatggagactcaaatgtc 30043074  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 92
Target Start/End: Complemental strand, 29985851 - 29985814
Alignment:
Q  55 gtgtttcaaaaatttatatttaattcattccatgtgaa 92  Q
    |||||||||| |||||||||||||||||| ||||||||    
T  29985851 gtgtttcaaatatttatatttaattcatttcatgtgaa 29985814  T

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Target: scaffold0024 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 89
Target Start/End: Complemental strand, 48007 - 47955
Alignment:
Q  37 ttttatcttcaacttttcgtgtttcaaaaatttatatttaattcattccatgt 89  Q
    ||||||||| |||||||   |||| |||||||||||||||||||||| |||||    
T  48007 ttttatcttgaacttttgtcgtttaaaaaatttatatttaattcatttcatgt 47955  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 89
Target Start/End: Complemental strand, 53231283 - 53231231
Alignment:
Q  37 ttttatcttcaacttttcgtgtttcaaaaatttatatttaattcattccatgt 89  Q
    ||||||||| || |||| |||||| ||||| |||||||||||||||| |||||    
T  53231283 ttttatcttgaatttttggtgtttaaaaaaattatatttaattcattacatgt 53231231  T

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