View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8334_low_12 (Length: 328)
Name: NF8334_low_12
Description: NF8334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8334_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 19 - 314
Target Start/End: Complemental strand, 4539629 - 4539332
Alignment:
| Q |
19 |
tgctgcgtacaaacttacaccaacttacaagcctctaaatagtgaggtaccaccttatagaaattttgtaccaccattttctctaaatccagtttacaat |
118 |
Q |
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| T |
4539629 |
tgctgcgtacaaacttacaccaacttacaagcctctaaatagtgagttaccaccttatacaaattttgtaccaccattttctctaaatccagtttacaat |
4539530 |
T |
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| Q |
119 |
gctccaatttacaagactccaaacagtcctccaatttacaatcctccaatttacgaagctcatccaacttacaacccctcaaagaagaggctaccaccac |
218 |
Q |
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|||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||||||| || |||||||||||||||| ||||| |
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| T |
4539529 |
gctccaatatacaagacttcaaacagtcctccaatttacaatcctccaatttatgaagctcctccaacttacaagccttcaaagaagaggctacaaccac |
4539430 |
T |
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| Q |
219 |
catttcagaagctaccacgtgtgtaaggtatgaca-ttttttagtc-ttgaaagatttgtaatcaaaactgtatttcataataaacttttcaaataga |
314 |
Q |
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||||||||||||||||||||||||||||||||||| |||| |||| || |||||||| || | |||| | |||||||||||||| |||||||||||| |
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| T |
4539429 |
catttcagaagctaccacgtgtgtaaggtatgacacttttagagtctttaaaagatttatactaaaaagtttatttcataataaagttttcaaataga |
4539332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 201 - 315
Target Start/End: Complemental strand, 4556054 - 4555939
Alignment:
| Q |
201 |
agaagaggctaccaccaccatttcagaagctaccacgtgtgtaaggtatgacatttttt-agtcttgaaagatttgtaatcaaaactgtatttcataata |
299 |
Q |
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||||||||| | ||||||||| ||||||||||| | |||| |||||||||||||| ||||||||||||||||| |||||| | |||||||||||| |
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| T |
4556054 |
agaagaggccagcaccaccatatcagaagctactgtttatgtatggtatgacatttttagagtcttgaaagatttgttctcaaaagtttatttcataata |
4555955 |
T |
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| Q |
300 |
aacttttcaaatagaa |
315 |
Q |
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|| ||| ||||||||| |
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| T |
4555954 |
aaatttacaaatagaa |
4555939 |
T |
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