View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8334_low_13 (Length: 318)
Name: NF8334_low_13
Description: NF8334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8334_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 8 - 299
Target Start/End: Complemental strand, 52290023 - 52289732
Alignment:
| Q |
8 |
gagaagcagagaggaaaagaaacgaaggttatgtcaagtagaatggaagagaatcgaagaggaaccgaaacgaaggttatgtcatgtagaatggaggaga |
107 |
Q |
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| T |
52290023 |
gagaatcaaagaggaaaagaaacgaaggttatgtcaagtagaatggaagagaatcgaagaggaaccgaaacgaaggttatgtcaagtagaatggaggaga |
52289924 |
T |
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| Q |
108 |
aggtaaaagaaagctttgctttggtgaaaaagtcaaaggatccttacgaagacttcaagaaatcaatgttagagatgatagaagagatggaaatgtccga |
207 |
Q |
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| T |
52289923 |
aggtaaaagaaagctttgctttggtgaaaaagtcaaaggatccttacgaagacttcaagaaatcaatgttagagatgatagaagagatggaaatgtctga |
52289824 |
T |
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| Q |
208 |
agccaaggacttggagcaactattgcagtgttttttggctctgaattctagagattatcatggagtaattgtgcgagctttcatggagattt |
299 |
Q |
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| T |
52289823 |
agccaaggacttggagcaactattgcagtgttttttggctctgaattctagagattatcatggagtaattgtgcgagctttcatggagattt |
52289732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 55 - 108
Target Start/End: Complemental strand, 52290024 - 52289971
Alignment:
| Q |
55 |
agagaatcgaagaggaaccgaaacgaaggttatgtcatgtagaatggaggagaa |
108 |
Q |
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| T |
52290024 |
agagaatcaaagaggaaaagaaacgaaggttatgtcaagtagaatggaagagaa |
52289971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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