View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8334_low_16 (Length: 259)
Name: NF8334_low_16
Description: NF8334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8334_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 48961172 - 48960932
Alignment:
| Q |
1 |
gagaaggcagtgagaaaattaatggacggtggtgatgaagccgaagatataagacggcgtgctcgagagtttggggataaggctatatgagctgttcaag |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48961172 |
gagaaggcagtgagaaaattaatggacggtggtgatgaagccgaagatataagacggcgtgctcgagagtttggggataaggctatatgagctgttcaag |
48961073 |
T |
|
| Q |
101 |
taggcggctcatctcataataatttgctggctttaattgatgatcttaaaagattgagagacaggaagccacttgattagttcaataactccctctttga |
200 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48961072 |
taggcggctcatctcataataatttgttggctttaattgatgatcttaaaagattgagagacaggaagccacttgattagttcaataactccctctttga |
48960973 |
T |
|
| Q |
201 |
agaagcattgtccttgtgtggatcgtgattgtgcaacattt |
241 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
48960972 |
agaagcattgtccttgtgtgtatcgtgattgtgcaacattt |
48960932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 22 - 185
Target Start/End: Complemental strand, 48958004 - 48957841
Alignment:
| Q |
22 |
atggacggtggtgatgaagccgaagatataagacggcgtgctcgagagtttggggataaggctatatgagctgttcaagtaggcggctcatctcataata |
121 |
Q |
| |
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|||||||||||||||||||| || || || | || |||||||| |||||| || || ||||||| | |||||||||||| ||| || ||||||||||| | |
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| T |
48958004 |
atggacggtggtgatgaagctgaggaaatcaaacagcgtgctcaagagttcggagaaaaggctacacgagctgttcaagaaggtggatcatctcataaca |
48957905 |
T |
|
| Q |
122 |
atttgctggctttaattgatgatcttaaaagattgagagacaggaagccacttgattagttcaa |
185 |
Q |
| |
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||||| || |||| ||||||||||||||| | ||||| || | ||| |||||||||| ||||| |
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| T |
48957904 |
atttgttgtctttgattgatgatcttaaacaaatgagaaactgcaagacacttgattaattcaa |
48957841 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 48965210 - 48965025
Alignment:
| Q |
1 |
gagaaggcagtgagaaaattaatggacggtggtgatgaagccgaagatataagacggcgtgctcgagagtttggggataaggctatatgagctgttcaag |
100 |
Q |
| |
|
|||||||| ||||| | ||| |||||| ||||||||||||| || | || ||| | ||||||| ||||||||| || ||||||| | |||| |||||| |
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|
| T |
48965210 |
gagaaggctgtgaggagattgatggacagtggtgatgaagctgagaaaattagaagtcgtgctcaagagtttggagaaaaggctagacgagccattcaag |
48965111 |
T |
|
| Q |
101 |
taggcggctcatctcataataatttgctggctttaattgatgatcttaaaagattgagagacaggaagccacttgattagttcaat |
186 |
Q |
| |
|
||| ||||| |||||||| |||||| | || || ||||||||||| |||||||||||||| || |||||| |||| ||| ||||| |
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| T |
48965110 |
aaggtggctcgtctcataagaatttgttagccttgattgatgatctcaaaagattgagagatagcaagccaattgagtagctcaat |
48965025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 58 - 163
Target Start/End: Complemental strand, 48967282 - 48967177
Alignment:
| Q |
58 |
cgtgctcgagagtttggggataaggctatatgagctgttcaagtaggcggctcatctcataataatttgctggctttaattgatgatcttaaaagattga |
157 |
Q |
| |
|
||||||||||| ||||| || ||||||| | |||| |||||| ||| |||| ||| |||||||||| || ||||| |||||||||||||||||| ||| |
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| T |
48967282 |
cgtgctcgagactttggagaaaaggctacacgagcacttcaagaaggtggcttgtcttataataatttacttgctttgattgatgatcttaaaagaatga |
48967183 |
T |
|
| Q |
158 |
gagaca |
163 |
Q |
| |
|
|||||| |
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|
| T |
48967182 |
gagaca |
48967177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 28385215 - 28385037
Alignment:
| Q |
1 |
gagaaggcagtgagaaaattaatggacggtggtgatgaagccgaagatataagacggcgtgctcgagagtttggggataaggctatatgagctgttcaag |
100 |
Q |
| |
|
|||||||| |||| ||||| ||||||||||| |||||||| ||| |||| |||| |||||||||||||| || || ||||||| | |||||||| ||| |
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|
| T |
28385215 |
gagaaggctatgaggaaattgatggacggtggcgatgaagctgaaaatatgagacaacgtgctcgagagttaggagagaaggctacacgagctgttaaag |
28385116 |
T |
|
| Q |
101 |
taggcggctcatctcataataatttgctggctttaattgatgatcttaaaagattgagagacaggaagccacttgatta |
179 |
Q |
| |
|
||| || || ||| ||||||||||| | |||||||| || || |||||||||||||||||||| || |||| |||||| |
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|
| T |
28385115 |
aaggtggttcctcttataataatttgttagctttaatcgacgaacttaaaagattgagagacagcaaaccacatgatta |
28385037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 12540566 - 12540388
Alignment:
| Q |
1 |
gagaaggcagtgagaaaattaatggacggtggtgatgaagccgaagatataagacggcgtgctcgagagtttggggataaggctatatgagctgttcaag |
100 |
Q |
| |
|
|||||||| |||| | ||| ||||| |||||| ||||||| ||| |||| |||| ||||| |||||| |||| || ||||||| | |||||||||||| |
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| T |
12540566 |
gagaaggctatgaggagattgatggatggtggttatgaagctgaaaatatgagactacgtgcacgagagattggagagaaggctagacgagctgttcaag |
12540467 |
T |
|
| Q |
101 |
taggcggctcatctcataataatttgctggctttaattgatgatcttaaaagattgagagacaggaagccacttgatta |
179 |
Q |
| |
|
||| || || ||||||||||||||| | |||| || || || |||||||||| |||||| | ||||||| |||||| |
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|
| T |
12540466 |
aaggtggttcctctcataataatttgttatctttgatcgacgaaattaaaagatttagagactgcaagccacatgatta |
12540388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 13448244 - 13448083
Alignment:
| Q |
1 |
gagaaggcagtgagaaaattaatggacggtggtgatgaagccgaagatataagacggcgtgctcgagagtttggggataaggctatatgagctgttcaag |
100 |
Q |
| |
|
|||||||| || || | ||| |||||||||||||||||||| ||| |||| || | ||||||||||||||||| || || |||||| |||| |||||| |
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|
| T |
13448244 |
gagaaggctgtaaggagattgatggacggtggtgatgaagctgaaaatatcaggctacgtgctcgagagtttggagaaaaagctatacaagctattcaag |
13448145 |
T |
|
| Q |
101 |
taggcggctcatctcataataatttgctggctttaattgatgatcttaaaagattgagagac |
162 |
Q |
| |
|
||| ||||| ||| ||||||||||| ||||||| ||||| || |||||||||| ||||||| |
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|
| T |
13448144 |
aaggtggctcgtcttataataatttgttggctttgattgacgaacttaaaagatcgagagac |
13448083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 13454715 - 13454557
Alignment:
| Q |
1 |
gagaaggcagtgagaaaattaatggacggtggtgatgaagccgaagatataagacggcgtgctcgagagtttggggataaggctatatgagctgttcaag |
100 |
Q |
| |
|
|||||||| ||||| | ||| |||| ||||||||||||||| || |||| || ||||||||||||||||| || ||||||| | |||| ||||| |
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|
| T |
13454715 |
gagaaggctgtgaggagattgatgggcggtggtgatgaagctaaaaatatcagggtacgtgctcgagagtttggagaaaaggctacacaagctattcaaa |
13454616 |
T |
|
| Q |
101 |
taggcggctcatctcataataatttgctggctttaattgatgatcttaaaagattgaga |
159 |
Q |
| |
|
||| ||||||||| ||||||||||| ||||||| |||||||| ||||||||||||||| |
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|
| T |
13454615 |
aaggtggctcatcttataataatttgttggctttgattgatgaacttaaaagattgaga |
13454557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 60 - 162
Target Start/End: Complemental strand, 13440022 - 13439920
Alignment:
| Q |
60 |
tgctcgagagtttggggataaggctatatgagctgttcaagtaggcggctcatctcataataatttgctggctttaattgatgatcttaaaagattgaga |
159 |
Q |
| |
|
||||| ||||||||| || ||||||| | |||| |||||| ||| ||||| ||| ||||||||||| ||||||||||||| || ||||||||||||||| |
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|
| T |
13440022 |
tgctcaagagtttggagaaaaggctacacaagctattcaagaaggtggctcgtcttataataatttgttggctttaattgaagaacttaaaagattgaga |
13439923 |
T |
|
| Q |
160 |
gac |
162 |
Q |
| |
|
||| |
|
|
| T |
13439922 |
gac |
13439920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 12641779 - 12641954
Alignment:
| Q |
1 |
gagaaggcagtgagaaaattaatggacggtggtgatgaagccgaagatataagacggcgtgctcgagagtttggggataaggctatatgagctgttcaag |
100 |
Q |
| |
|
||||| || ||||| | ||| ||||||| |||||||||||| | || || |||| ||||||| |||||||||| | ||||||| | |||||| ||| |
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|
| T |
12641779 |
gagaaagctgtgaggagattgatggacgatggtgatgaagctaaggaaatcagacaacgtgctcaagagtttgggaaaaaggctacacatgctgttgaag |
12641878 |
T |
|
| Q |
101 |
taggcggctcatctcataataatttgctggctttaattgatgatcttaaaagattgagagacaggaagccacttga |
176 |
Q |
| |
|
|||||| || |||||||| |||||| ||||||| ||| | ||||||||||||| ||||||| | || |||||||| |
|
|
| T |
12641879 |
aaggcgggtcgtctcataacaatttgttggctttgattaacgatcttaaaagatcgagagaccgcaaaccacttga |
12641954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 3417825 - 3418003
Alignment:
| Q |
1 |
gagaaggcagtgagaaaattaatggacggtggtgatgaagccgaagatataagacggcgtgctcgagagtttggggataaggctatatgagctgttcaag |
100 |
Q |
| |
|
||||||||| |||| | ||| |||||| || ||||||| || |||| ||| |||| |||||||||||| |||| || ||||||| | ||||| |||||| |
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|
| T |
3417825 |
gagaaggcaatgaggagattgatggacagtagtgatgaggctgaaggtatgagactacgtgctcgagagcttggagagaaggctaaacgagctattcaag |
3417924 |
T |
|
| Q |
101 |
taggcggctcatctcataataatttgctggctttaattgatgatcttaaaagattgagagacaggaagccacttgatta |
179 |
Q |
| |
|
||| || || || ||| |||||||| | |||| || || || ||||||| ||||||||| | |||||||||||||| |
|
|
| T |
3417925 |
aaggtggttcctcacatcataatttgttaactttgatcgacgaacttaaaaagttgagagactgcaagccacttgatta |
3418003 |
T |
|
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