View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8334_low_18 (Length: 250)

Name: NF8334_low_18
Description: NF8334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8334_low_18
NF8334_low_18
[»] chr3 (12 HSPs)
chr3 (7-250)||(5848081-5848324)
chr3 (13-250)||(5455661-5455898)
chr3 (13-246)||(5447099-5447332)
chr3 (12-250)||(5827343-5827590)
chr3 (13-250)||(5490838-5491084)
chr3 (13-206)||(5801722-5801915)
chr3 (44-203)||(5526522-5526681)
chr3 (12-237)||(20344268-20344502)
chr3 (13-229)||(5853403-5853619)
chr3 (13-206)||(5503651-5503841)
chr3 (13-178)||(5485417-5485582)
chr3 (191-231)||(5485604-5485644)
[»] chr6 (1 HSPs)
chr6 (13-246)||(25808480-25808713)


Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 7 - 250
Target Start/End: Complemental strand, 5848324 - 5848081
Alignment:
Q  7 tttggtgttgaggaaaaccgtgagtatctatcctcactgaaaactcgccgtcagcaggatcttcagaggatctccaagaagtgagatatctatatggacc 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5848324 tttggtgttgaggaaaaccgtgagtatctatcctcactgaaaactcgccgtcagcaggatcttcagaggatctccaagaagtgagatatctatatggacc 5848225  T
Q  107 agtaactaagttacttttcagcttcattccagcaaggaaagtgttaccaggataatcaaaactttcccacaaaaagttctgagagctgtttgcatctttc 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5848224 agtaactaagttacttttcagcttcattccagcaaggaaagtgttaccaggataatcaaaactttcccacaaaaagttctgagagctgtttgcatctttc 5848125  T
Q  207 ccaacaaggtttcctgaatccaacaactgcacaataactgattt 250  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  5848124 ccaacaaggtttcctgaatccaacaactgcacaataactgattt 5848081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 5455661 - 5455898
Alignment:
Q  13 gttgaggaaaaccgtgagtatctatcctcactgaaaactcgccgtcagcaggatcttcagaggatctccaagaagtgagatatctatatggaccagtaac 112  Q
    |||| |||||||| || ||||||||| |   |||| |||| || ||||||||||| |||| |  |||||||||||||||||||||||||||||| |||||    
T  5455661 gttggggaaaaccatgtgtatctatcttatatgaacactcaccttcagcaggatcatcagggtttctccaagaagtgagatatctatatggacccgtaac 5455760  T
Q  113 taagttacttttcagcttcattccagcaaggaaagtgttaccaggataatcaaaactttcccacaaaaagttctgagagctgtttgcatctttcccaaca 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||||    
T  5455761 taagttacttttcagcttcattccagcaaggaaagtgttaccaggataatcaaaactttcccacaaaaagttctgagtgctgtctgcatctttcacaaca 5455860  T
Q  213 aggtttcctgaatccaacaactgcacaataactgattt 250  Q
    |||||||||||||||||||||||||||| |||||||||    
T  5455861 aggtttcctgaatccaacaactgcacaacaactgattt 5455898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 13 - 246
Target Start/End: Original strand, 5447099 - 5447332
Alignment:
Q  13 gttgaggaaaaccgtgagtatctatcctcactgaaaactcgccgtcagcaggatcttcagaggatctccaagaagtgagatatctatatggaccagtaac 112  Q
    ||||||||||||| || ||||||||| |    ||| |||| || ||||||||||||| || |  |||||| || ||||||||||||||||||||||||||    
T  5447099 gttgaggaaaaccatgtgtatctatcttatacgaacactcaccttcagcaggatcttgagggcttctccatgatgtgagatatctatatggaccagtaac 5447198  T
Q  113 taagttacttttcagcttcattccagcaaggaaagtgttaccaggataatcaaaactttcccacaaaaagttctgagagctgtttgcatctttcccaaca 212  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||| |||||||| |||||    
T  5447199 taagttacttttcagcttcattccaggaaggaaagtgtcaccaggatagtcaaaactttcccacaaaaagttctgagtgctgtttacatctttcacaaca 5447298  T
Q  213 aggtttcctgaatccaacaactgcacaataactg 246  Q
    |||||||||||||||||||||||||||| |||||    
T  5447299 aggtttcctgaatccaacaactgcacaacaactg 5447332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 12 - 250
Target Start/End: Complemental strand, 5827590 - 5827343
Alignment:
Q  12 tgttgaggaaaaccgtgagtatctatcctcactgaaaactcgccgtcagcaggatcttcagaggatctccaagaagtgagatatctatatggaccagtaa 111  Q
    |||||||||||||| ||||||||||||||    |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  5827590 tgttgaggaaaaccatgagtatctatcctatacgaaaactcaccgtcagcaggatcttcagaggatctccaagaagtcagatatctatatggaccagtaa 5827491  T
Q  112 ctaagttacttttcagcttcattccagcaaggaaagtgttaccaggataatcaaaactttcccacaaaaa------gttctgaga---gctgtttgcatc 202  Q
    ||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||       |||| | |    ||| |||||||    
T  5827490 ctaagttacttctcagcttcattccagcaaggaaagtgtcaccaggataattaaaactttcccacaaaaaatcctcattcttaaaacttctgcttgcatc 5827391  T
Q  203 tttcccaacaaggtttcctgaatccaacaactgcacaataactgattt 250  Q
    |||| ||||||||||||| |||||||| | ||||||||||||||||||    
T  5827390 tttcacaacaaggtttcccgaatccaaaagctgcacaataactgattt 5827343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 5490838 - 5491084
Alignment:
Q  13 gttgaggaaaaccgtgagtatctatcctcactgaaaactcgccgtcagcaggatcttcagaggatctccaagaagtgagatatctatatggaccagtaac 112  Q
    ||||||||||||| || ||||||||| |    ||| |||| || ||||||||||||| || |  ||||||||| ||||||||||||||||||||||||||    
T  5490838 gttgaggaaaaccatgtgtatctatcttatacgaacactcaccttcagcaggatcttgagggtttctccaagatgtgagatatctatatggaccagtaac 5490937  T
Q  113 taagttacttttcagcttcattccagcaaggaaagtgttaccaggataatcaaaactttcccacaaaaagttctga---------gagctgtttgcatct 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | || |           |||||||||||||    
T  5490938 taagttacttttcagcttcattccagcaaggaaagtgttaccaggataatcaaaactttcccacaataaatcctcattcttaccgctgctgtttgcatct 5491037  T
Q  204 ttcccaacaaggtttcctgaatccaacaactgcacaataactgattt 250  Q
    ||| |||||||||||||||||||||||| ||||||||||||||||||    
T  5491038 ttcacaacaaggtttcctgaatccaacagctgcacaataactgattt 5491084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 13 - 206
Target Start/End: Complemental strand, 5801915 - 5801722
Alignment:
Q  13 gttgaggaaaaccgtgagtatctatcctcactgaaaactcgccgtcagcaggatcttcagaggatctccaagaagtgagatatctatatggaccagtaac 112  Q
    |||||||||||||  |  ||||||||||   |||| |||| || ||||||||||||| || |  ||||||||| ||||||||||||||||||||||||||    
T  5801915 gttgaggaaaaccaggcatatctatcctatatgaacactcaccttcagcaggatcttgagggcttctccaagatgtgagatatctatatggaccagtaac 5801816  T
Q  113 taagttacttttcagcttcattccagcaaggaaagtgttaccaggataatcaaaactttcccacaaaaagttctgagagctgtttgcatctttc 206  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||    
T  5801815 taagttacttttcagcttcattccaggaaggaaagtgttaccaggatagtcaaaactttcccacaaaaagttctgagagccgtttgcatctttc 5801722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 44 - 203
Target Start/End: Original strand, 5526522 - 5526681
Alignment:
Q  44 tgaaaactcgccgtcagcaggatcttcagaggatctccaagaagtgagatatctatatggaccagtaactaagttacttttcagcttcattccagcaagg 143  Q
    |||| |||| || ||||||||||||| || |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5526522 tgaatactcaccttcagcaggatcttgagggtttctccaagaagtgagatatctatatggaccagtaactaagttacttttcagcttcattccagcaagg 5526621  T
Q  144 aaagtgttaccaggataatcaaaactttcccacaaaaagttctgagagctgtttgcatct 203  Q
    ||||||||||| ||||| |||||||||||||||| ||||||||||||| |||||||||||    
T  5526622 aaagtgttaccgggatagtcaaaactttcccacagaaagttctgagagttgtttgcatct 5526681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 12 - 237
Target Start/End: Original strand, 20344268 - 20344502
Alignment:
Q  12 tgttgaggaaaaccgtgagtatctatcctcactgaaaactcgccgtcagcaggatcttcagaggatctccaagaagtgagatatctatatggaccagtaa 111  Q
    |||||||||||||| |||||||| |||||    |||||||| ||  |||||||||||||||||| ||||||||||||||||||||||||||||||||| |    
T  20344268 tgttgaggaaaaccatgagtatcgatcctatacgaaaactcacctacagcaggatcttcagaggttctccaagaagtgagatatctatatggaccagtca 20344367  T
Q  112 ctaagttacttttcagcttcattccagcaaggaaagtgttaccaggataatcaaaactttcccacaaaaagttctga---------gagctgtttgcatc 202  Q
    ||||||||||||||||||||||||||||||| || |||| ||||||||||||||| |||||||||||||| | || |           ||| ||||||||    
T  20344368 ctaagttacttttcagcttcattccagcaagcaacgtgtcaccaggataatcaaagctttcccacaaaaactcctcatcctcactgctgctatttgcatc 20344467  T
Q  203 tttcccaacaaggtttcctgaatccaacaactgca 237  Q
    |||  ||||||||||||||||||||||||||||||    
T  20344468 ttttacaacaaggtttcctgaatccaacaactgca 20344502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 13 - 229
Target Start/End: Complemental strand, 5853619 - 5853403
Alignment:
Q  13 gttgaggaaaaccgtgagtatctatcctcactgaaaactcgccgtcagcaggatcttcagaggatctccaagaagtgagatatctatatggaccagtaac 112  Q
    ||||||||||||| ||  ||||||||||   |||| |||| || ||||||||||||| || |  ||||||||| ||||||||||||||||||||||||||    
T  5853619 gttgaggaaaaccatgcatatctatcctatatgaacactcaccttcagcaggatcttgagggcttctccaagatgtgagatatctatatggaccagtaac 5853520  T
Q  113 taagttacttttcagcttcattccagcaaggaaagtgttaccaggataatcaaaactttcccacaaaaagttctgagagctgtttgcatctttcccaaca 212  Q
    ||| |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||| |  ||| ||| ||| |||  ||||    
T  5853519 taaattacttttcagcttcattcccgcaaggaaattgttaccaggataatcaaaactttcccacaaaaaattctgtgctctgattgtatcattcaaaaca 5853420  T
Q  213 aggtttcctgaatccaa 229  Q
    || ||||||||||||||    
T  5853419 agatttcctgaatccaa 5853403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 13 - 206
Target Start/End: Original strand, 5503651 - 5503841
Alignment:
Q  13 gttgaggaaaaccgtgagtatctatcctcactgaaaactcgccgtcagcaggatcttcagaggatctccaagaagtgagatatctatatggaccagtaac 112  Q
    ||||||||||||| || ||||||||| |   |||| |||| || ||||||||||||| || |  | ||||||| ||||||||||||||||||||||||||    
T  5503651 gttgaggaaaaccatgtgtatctatcttatatgaacactcaccctcagcaggatcttgagggtctttccaagatgtgagatatctatatggaccagtaac 5503750  T
Q  113 taagttacttttcagcttcattccagcaaggaaagtgttaccaggataatcaaaactttcccacaaaaagttctgagagctgtttgcatctttc 206  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||   |||||||||||||    
T  5503751 taagttacttttcagcttcattccagcaaggaaagtgttaccgggatagtcaaaactttcccacagaaagttctgaga---gtttgcatctttc 5503841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 13 - 178
Target Start/End: Original strand, 5485417 - 5485582
Alignment:
Q  13 gttgaggaaaaccgtgagtatctatcctcactgaaaactcgccgtcagcaggatcttcagaggatctccaagaagtgagatatctatatggaccagtaac 112  Q
    ||||||||||||| ||  |||||||| |   |||| |||| || ||||||||||||| || |  | ||||||| ||||||||||||||||||||||||||    
T  5485417 gttgaggaaaaccatgtatatctatcttatatgaacactcaccttcagcaggatcttgagggtttttccaagatgtgagatatctatatggaccagtaac 5485516  T
Q  113 taagttacttttcagcttcattccagcaaggaaagtgttaccaggataatcaaaactttcccacaa 178  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5485517 taagttacttttcagcttcattccagcaaggaaagtgttaccaggataatcaaaactttcccacaa 5485582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 231
Target Start/End: Original strand, 5485604 - 5485644
Alignment:
Q  191 gctgtttgcatctttcccaacaaggtttcctgaatccaaca 231  Q
    ||||||||||||||||  |||||||||||||||||| ||||    
T  5485604 gctgtttgcatctttcaaaacaaggtttcctgaatctaaca 5485644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 13 - 246
Target Start/End: Complemental strand, 25808713 - 25808480
Alignment:
Q  13 gttgaggaaaaccgtgagtatctatcctcactgaaaactcgccgtcagcaggatcttcagaggatctccaagaagtgagatatctatatggaccagtaac 112  Q
    ||||||||||||| || ||||||||| |    ||| |||| || ||||||||||||| || |  |||||| || ||||||||||||||||||||||||||    
T  25808713 gttgaggaaaaccatgtgtatctatcttatacgaacactcaccttcagcaggatcttgagggcttctccatgatgtgagatatctatatggaccagtaac 25808614  T
Q  113 taagttacttttcagcttcattccagcaaggaaagtgttaccaggataatcaaaactttcccacaaaaagttctgagagctgtttgcatctttcccaaca 212  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||| |||||||| |||||    
T  25808613 taagttacttttcagcttcattccaggaaggaaagtgtcaccaggatagtcaaaactttcccacaaaaagttctgagtgctgtttacatctttcacaaca 25808514  T
Q  213 aggtttcctgaatccaacaactgcacaataactg 246  Q
    |||||||||||||||||||||||||||| |||||    
T  25808513 aggtttcctgaatccaacaactgcacaacaactg 25808480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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