View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8334_low_19 (Length: 239)
Name: NF8334_low_19
Description: NF8334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8334_low_19 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 5848078 - 5847856
Alignment:
| Q |
1 |
ccgccacaattcctgatgaattggagttccagatgacacctttggagccatcaagaataacaagatttccttggtcgttgagtttcagcattgctgttga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5848078 |
ccgccacaattcctgatgaattggagttccagatgacacctttggagccatcaagaataacaagatttccttggtcgttgagtttcagcattgctgttga |
5847979 |
T |
|
| Q |
101 |
gttacgtacaggagtatttctattggcaacccacacaatagtccttggtgatatgttcttgtaccatataccgaagtattggcgttgtggatctccaaag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5847978 |
gttacgtacaggagtatttctattggcaacccacacaatagtccttggtgatatgttcttgtaccatataccgaagtattggcgttgtggatctccaaag |
5847879 |
T |
|
| Q |
201 |
tagaaaaatcctgcttcaaacct |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
5847878 |
tagaaaaatcctgcttcaaacct |
5847856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 5455901 - 5456120
Alignment:
| Q |
1 |
ccgccacaattcctgatgaattggagttccagatgacacctttggagccatcaagaataacaagatttccttggtcgttgagtttcagcattgctgttga |
100 |
Q |
| |
|
|||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| || || ||||||||||||||||||||||| |
|
|
| T |
5455901 |
ccgctacaattcttgatgaattggtgttccagatgacacctttggagccatcaagaataacaagacttccctgatcattgagtttcagcattgctgttga |
5456000 |
T |
|
| Q |
101 |
gttacgtacaggagtatttctattggcaacccacacaatagtccttggtgatatgttcttgtaccatataccgaagtattggcgttgtggatctccaaag |
200 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
5456001 |
gttttgtacaggagtatttctattggcaacccacacaattgtccttggtgatatgttcttgtaccatataccaaagtattggcgttgtggatctccaaaa |
5456100 |
T |
|
| Q |
201 |
tagaaaaatcctgcttcaaa |
220 |
Q |
| |
|
| |||||| ||||||||||| |
|
|
| T |
5456101 |
ttgaaaaaacctgcttcaaa |
5456120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 14 - 223
Target Start/End: Original strand, 5491100 - 5491309
Alignment:
| Q |
14 |
tgatgaattggagttccagatgacacctttggagccatcaagaataacaagatttccttggtcgttgagtttcagcattgctgttgagttacgtacagga |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||| ||||||||||||||||||||| || |||| |
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|
| T |
5491100 |
tgatgaattggagttccagatgacacctttggagccatcaagaataacaagacttccttgatcattgactttcagcattgctgttgagttttgtgtagga |
5491199 |
T |
|
| Q |
114 |
gtatttctattggcaacccacacaatagtccttggtgatatgttcttgtaccatataccgaagtattggcgttgtggatctccaaagtagaaaaatcctg |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||| |
|
|
| T |
5491200 |
gtatttctattggcaacccacacaatagtccttggtgatatgttcttgtaccatataccgaagtattggcgttgtgaatcgccaaagttgaaaaatcctg |
5491299 |
T |
|
| Q |
214 |
cttcaaacct |
223 |
Q |
| |
|
||||| |||| |
|
|
| T |
5491300 |
cttcatacct |
5491309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 5827340 - 5827123
Alignment:
| Q |
1 |
ccgccacaattcctgatgaattggagttccagatgacacctttggagccatcaagaataacaagatttccttggtcgttgagtttcagcattgctgttga |
100 |
Q |
| |
|
||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||| |||||||||||||||||||| |
|
|
| T |
5827340 |
ccgccgcagttcttgatgaattggagttccagatgacacctttggagccatcaagaataacaagacttccttgattgttaagtttcagcattgctgttga |
5827241 |
T |
|
| Q |
101 |
gttacgtacaggagtatttctattggcaacccacacaatagtccttggtgatatgttcttgtaccatataccgaagtattggcgttgtggatctccaaag |
200 |
Q |
| |
|
||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||| |||||| |
|
|
| T |
5827240 |
gttttgtacaggagtatttcgattagcaacccacacaatagtccttggtgatatgttcttgtaccatataccgaagtattgacgctgtgaatcgccaaag |
5827141 |
T |
|
| Q |
201 |
tagaaaaatcctgcttca |
218 |
Q |
| |
|
| |||||||||||||||| |
|
|
| T |
5827140 |
ttgaaaaatcctgcttca |
5827123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 6 - 218
Target Start/End: Complemental strand, 5801676 - 5801464
Alignment:
| Q |
6 |
acaattcctgatgaattggagttccagatgacacctttggagccatcaagaataacaagatttccttggtcgttgagtttcagcattgctgttgagttac |
105 |
Q |
| |
|
||||||| || |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||| ||||||| |
|
|
| T |
5801676 |
acaattcttgttgaattggaggaccagatgacacctttggagccatcaagaataacaagacttccttgatcattgagtttcagcattgctgctgagttat |
5801577 |
T |
|
| Q |
106 |
gtacaggagtatttctattggcaacccacacaatagtccttggtgatatgttcttgtaccatataccgaagtattggcgttgtggatctccaaagtagaa |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||| ||||||| ||| |
|
|
| T |
5801576 |
gtacaggagtatttctattggcaacccacacaatagtccttggtgatatcttcttgtaccatataccgaagtattggcgttgggaatcgccaaagttgaa |
5801477 |
T |
|
| Q |
206 |
aaatcctgcttca |
218 |
Q |
| |
|
|||||| |||||| |
|
|
| T |
5801476 |
aaatccggcttca |
5801464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 4 - 221
Target Start/End: Original strand, 20344515 - 20344732
Alignment:
| Q |
4 |
ccacaattcctgatgaattggagttccagatgacacctttggagccatcaagaataacaagatttccttggtcgttgagtttcagcattgctgttgagtt |
103 |
Q |
| |
|
||||||||| ||||||||||||| |||||| || |||||||||||||||| |||||||||| |||| || | |||||||||||||| ||||||||||| |
|
|
| T |
20344515 |
ccacaattcttgatgaattggaggaccagataacgcctttggagccatcaacaataacaagagttccctgaccattgagtttcagcatcgctgttgagtt |
20344614 |
T |
|
| Q |
104 |
acgtacaggagtatttctattggcaacccacacaatagtccttggtgatatgttcttgtaccatataccgaagtattggcgttgtggatctccaaagtag |
203 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| | |
|
|
| T |
20344615 |
ttgtacaggcgtatttctattggcaacccacacaatagtccttggtgatatgttcttgtaccatataccgaagtattggcgtagtggatctctaaagttg |
20344714 |
T |
|
| Q |
204 |
aaaaatcctgcttcaaac |
221 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
20344715 |
aaaaatcctgcttcaaac |
20344732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 7 - 223
Target Start/End: Original strand, 5485672 - 5485888
Alignment:
| Q |
7 |
caattcctgatgaattggagttccagatgacacctttggagccatcaagaataacaagatttccttggtcgttgagtttcagcattgctgttgagttacg |
106 |
Q |
| |
|
|||||| |||||||||||||||||| |||||||| | ||||||||||||||||| |||| ||||||| ||||| ||||||||||||||||||||||| | |
|
|
| T |
5485672 |
caattcttgatgaattggagttccatatgacaccctcggagccatcaagaataataagacttccttgatcgttaagtttcagcattgctgttgagttttg |
5485771 |
T |
|
| Q |
107 |
tacaggagtatttctattggcaacccacacaatagtccttggtgatatgttcttgtaccatataccgaagtattggcgttgtggatctccaaagtagaaa |
206 |
Q |
| |
|
| ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||| ||||||| |||| |
|
|
| T |
5485772 |
tgcaggagtatttctattggcaacccatacaatagtccttggtgatatattcttgtaccatataccgaagtattgatgttgtgaatcgccaaagttgaaa |
5485871 |
T |
|
| Q |
207 |
aatcctgcttcaaacct |
223 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
5485872 |
aatcctgcttcaaacct |
5485888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 7 - 223
Target Start/End: Complemental strand, 5853379 - 5853163
Alignment:
| Q |
7 |
caattcctgatgaattggagttccagatgacacctttggagccatcaagaataacaagatttccttggtcgttgagtttcagcattgctgttgagttacg |
106 |
Q |
| |
|
|||||| |||||||||||| |||||||| | |||||||||||||||| |||||||||| ||||||| || | ||||||| |||||| |||||||| | |
|
|
| T |
5853379 |
caattcttgatgaattggaattccagataatgcctttggagccatcaataataacaagacttccttgatcagtaagtttcatcattgcagttgagttttg |
5853280 |
T |
|
| Q |
107 |
tacaggagtatttctattggcaacccacacaatagtccttggtgatatgttcttgtaccatataccgaagtattggcgttgtggatctccaaagtagaaa |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||| |||| |
|
|
| T |
5853279 |
tacaggagtatttctattggcaacccacacaatagtgcttggtgatatattcttgtaccatataccgaagtattggcgttgtgaatcgccaaagttgaaa |
5853180 |
T |
|
| Q |
207 |
aatcctgcttcaaacct |
223 |
Q |
| |
|
|||||||||||| |||| |
|
|
| T |
5853179 |
aatcctgcttcatacct |
5853163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 5447339 - 5447558
Alignment:
| Q |
1 |
ccgccacaattcctgatgaattggagttccagatgacacctttggagccatcaagaataacaagatttccttggtcgttgagtttcagcattgctgttga |
100 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| || || |||||||||||||||||||||| |
|
|
| T |
5447339 |
ccgccacagttcttgatgaattggagttccagatgtcacctttggagccatcaagaataacaagacttccctgatcagtgagtttcagcattgctgttga |
5447438 |
T |
|
| Q |
101 |
gttacgtacaggagtatttctattggcaacccacacaatagtccttggtgatatgttcttgtaccatataccgaagtattggcgttgtggatctccaaag |
200 |
Q |
| |
|
||| ||||||| || |||||||||||||||||||||| |||||| ||| | ||| | || ||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
5447439 |
gttttgtacaggggtgtttctattggcaacccacacaacagtcctaggtaaaatgctgttataccatataccaaagtattggcgttgtggatctccaaaa |
5447538 |
T |
|
| Q |
201 |
tagaaaaatcctgcttcaaa |
220 |
Q |
| |
|
| |||||||||||||||||| |
|
|
| T |
5447539 |
ttgaaaaatcctgcttcaaa |
5447558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 6 - 218
Target Start/End: Original strand, 5503887 - 5504099
Alignment:
| Q |
6 |
acaattcctgatgaattggagttccagatgacacctttggagccatcaagaataacaagatttccttggtcgttgagtttcagcattgctgttgagttac |
105 |
Q |
| |
|
||||||| |||| ||||||| |||||| | |||||||||||||| | ||||||||| ||||||| ||||| ||||||| ||||||||||||||| |
|
|
| T |
5503887 |
acaattcttgatatattggaggaccagataatgcctttggagccatccacgataacaagacttccttgatcgttaagtttcaacattgctgttgagtttt |
5503986 |
T |
|
| Q |
106 |
gtacaggagtatttctattggcaacccacacaatagtccttggtgatatgttcttgtaccatataccgaagtattggcgttgtggatctccaaagtagaa |
205 |
Q |
| |
|
|| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||| |
|
|
| T |
5503987 |
gtgtcggggtatttctattggcaacccacacaatagtccttggcgatatgttcttgtaccatataccgaagtattggcgttgtgaatcaccaaagttgaa |
5504086 |
T |
|
| Q |
206 |
aaatcctgcttca |
218 |
Q |
| |
|
||||||||||||| |
|
|
| T |
5504087 |
aaatcctgcttca |
5504099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 6 - 218
Target Start/End: Original strand, 5526730 - 5526942
Alignment:
| Q |
6 |
acaattcctgatgaattggagttccagatgacacctttggagccatcaagaataacaagatttccttggtcgttgagtttcagcattgctgttgagttac |
105 |
Q |
| |
|
||||||| |||| ||||||| |||||| | |||||||||||||| | |||| ||||| ||||||| ||||| ||||||| ||||||||||||||| |
|
|
| T |
5526730 |
acaattcttgatatattggaggaccagataatgcctttggagccatccacaatatcaagacttccttgatcgttaagtttcaacattgctgttgagtttt |
5526829 |
T |
|
| Q |
106 |
gtacaggagtatttctattggcaacccacacaatagtccttggtgatatgttcttgtaccatataccgaagtattggcgttgtggatctccaaagtagaa |
205 |
Q |
| |
|
|| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |
|
|
| T |
5526830 |
gtgtcggggtatttctattggcaacccacacaatagtccttggcgatatgttcttgtaccatataccgaagtattgatgttgtggatctccaaagttgaa |
5526929 |
T |
|
| Q |
206 |
aaatcctgcttca |
218 |
Q |
| |
|
||| ||||||||| |
|
|
| T |
5526930 |
aaaacctgcttca |
5526942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 25808473 - 25808417
Alignment:
| Q |
1 |
ccgccacaattcctgatgaattggagttccagatgacacctttggagccatcaagaa |
57 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
25808473 |
ccgccacagttcttgatgaattggagttccagatgtcacctttggagccatcaagaa |
25808417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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