View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8334_low_2 (Length: 658)
Name: NF8334_low_2
Description: NF8334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8334_low_2 |
 | |
|
| [»] scaffold1254 (1 HSPs) |
| | |
|
| [»] scaffold0419 (1 HSPs) |
| | |
|
| [»] scaffold0277 (1 HSPs) |
| | |
|
| [»] scaffold0349 (2 HSPs) |
| | |
|
| [»] scaffold0012 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 549; Significance: 0; HSPs: 34)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 549; E-Value: 0
Query Start/End: Original strand, 7 - 639
Target Start/End: Original strand, 26616818 - 26617457
Alignment:
| Q |
7 |
tttggagttcacagaacaatcatttatttttatttcatgtactatatatactattaatttactctcatgatgtaacagaatgattgcagtagtaaaaatg |
106 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26616818 |
tttggagctcacagaacaatcatttattttaatttcatgtactatatatactattaatttactctcatgatgtaacagaatgattgcagtagtaaaaatg |
26616917 |
T |
|
| Q |
107 |
aaaaagtttaagaactcaaatcaataacatgccacaagagcaacaaagataatggttctgcagtgattttcaccacagtaaaagttgaacaataattgat |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26616918 |
aaaaagtttaagaactcaaatcaataacatgccacaagagcaacaaagataatggttctgcagtgattttcaccacagtaaaagttgaacaataattgat |
26617017 |
T |
|
| Q |
207 |
ccacacagattagggaagtgagaagaaagtttcgccactaatgttaaataaatggacactcgtaaataactcttaggtgaaacttatttcttagtttatt |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26617018 |
ccacacagattagggaagtgagaagaaagtttcgccactaatgttaaataaatggacactcgtaaataactcttaggtgaaacttatttcttagtttatt |
26617117 |
T |
|
| Q |
307 |
ttcttgtttctccaaagtactctcactatcattttcttttcatggctatgcaatctccttcttcc------------atctcttatgatttcagcttcga |
394 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
26617118 |
ttcttgtttctccaaagtactctcactatcattttcttttcatggctatgcaatctccttcttcctcctcttcttctatctcttatgatttcagcttcga |
26617217 |
T |
|
| Q |
395 |
tgcgttcgtcagttttcggggggctgatactcga--tcgggcttcaccggcaatctctataaagctctttgtgaaaaaggagtccgaaccttcattgacg |
492 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |
|
|
| T |
26617218 |
tgcgttcgtcagttttcggggggctgatactcgatctcgggcttcaccggcaatctctataaagctctttgtgacaaaggagtccgaaccttcattgatg |
26617317 |
T |
|
| Q |
493 |
acaaggagcttcagaaaggtgatgaaatcacaccttcgctcctcaagagcattgaaaactcaagaattgccattgttgtcttctctaaagactatgcttc |
592 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26617318 |
acaaggagcttcagagaggtgatgaaatcacaccttcgctc-------gcattgaaaactcaagaattgccattgttgtcttctctaaagactatgcttc |
26617410 |
T |
|
| Q |
593 |
ttcttcattttgtttagatgaacttgtccatgttgagtaatgtgctg |
639 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26617411 |
ttcttcattttgtttagatgaacttgtccatgttgagtaatgtgctg |
26617457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 549; E-Value: 0
Query Start/End: Original strand, 7 - 639
Target Start/End: Original strand, 26722746 - 26723385
Alignment:
| Q |
7 |
tttggagttcacagaacaatcatttatttttatttcatgtactatatatactattaatttactctcatgatgtaacagaatgattgcagtagtaaaaatg |
106 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26722746 |
tttggagctcacagaacaatcatttattttaatttcatgtactatatatactattaatttactctcatgatgtaacagaatgattgcagtagtaaaaatg |
26722845 |
T |
|
| Q |
107 |
aaaaagtttaagaactcaaatcaataacatgccacaagagcaacaaagataatggttctgcagtgattttcaccacagtaaaagttgaacaataattgat |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26722846 |
aaaaagtttaagaactcaaatcaataacatgccacaagagcaacaaagataatggttctgcagtgattttcaccacagtaaaagttgaacaataattgat |
26722945 |
T |
|
| Q |
207 |
ccacacagattagggaagtgagaagaaagtttcgccactaatgttaaataaatggacactcgtaaataactcttaggtgaaacttatttcttagtttatt |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26722946 |
ccacacagattagggaagtgagaagaaagtttcgccactaatgttaaataaatggacactcgtaaataactcttaggtgaaacttatttcttagtttatt |
26723045 |
T |
|
| Q |
307 |
ttcttgtttctccaaagtactctcactatcattttcttttcatggctatgcaatctccttcttcc------------atctcttatgatttcagcttcga |
394 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
26723046 |
ttcttgtttctccaaagtactctcactatcattttcttttcatggctatgcaatctccttcttcctcctcttcttctatctcttatgatttcagcttcga |
26723145 |
T |
|
| Q |
395 |
tgcgttcgtcagttttcggggggctgatactcga--tcgggcttcaccggcaatctctataaagctctttgtgaaaaaggagtccgaaccttcattgacg |
492 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |
|
|
| T |
26723146 |
tgcgttcgtcagttttcggggggctgatactcgatctcgggcttcaccggcaatctctataaagctctttgtgacaaaggagtccgaaccttcattgatg |
26723245 |
T |
|
| Q |
493 |
acaaggagcttcagaaaggtgatgaaatcacaccttcgctcctcaagagcattgaaaactcaagaattgccattgttgtcttctctaaagactatgcttc |
592 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26723246 |
acaaggagcttcagagaggtgatgaaatcacaccttcgctc-------gcattgaaaactcaagaattgccattgttgtcttctctaaagactatgcttc |
26723338 |
T |
|
| Q |
593 |
ttcttcattttgtttagatgaacttgtccatgttgagtaatgtgctg |
639 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26723339 |
ttcttcattttgtttagatgaacttgtccatgttgagtaatgtgctg |
26723385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 423 - 622
Target Start/End: Original strand, 26811431 - 26811630
Alignment:
| Q |
423 |
actcgatcgggcttcaccggcaatctctataaagctctttgtgaaaaaggagtccgaaccttcattgacgacaaggagcttcagaaaggtgatgaaatca |
522 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||||| |||||| ||||||| |
|
|
| T |
26811431 |
actcgatctggcttcaccggtcatctctataaagctctttgtgacaaaggaatccgaaccttcattgatgacaaggagcttcagagaggtgacgaaatca |
26811530 |
T |
|
| Q |
523 |
caccttcgctcctcaagagcattgaaaactcaagaattgccattgttgtcttctctaaagactatgcttcttcttcattttgtttagatgaacttgtcca |
622 |
Q |
| |
|
|||||||||||||||||||||||||| |||| || ||||||||| |||| |||||| | ||||||| |||| || |||||||||||||| |||||||| |
|
|
| T |
26811531 |
caccttcgctcctcaagagcattgaacactctaggattgccattattgtattctctgagaactatgcaacttcgtcgttttgtttagatgagcttgtcca |
26811630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 435 - 623
Target Start/End: Original strand, 26949595 - 26949783
Alignment:
| Q |
435 |
ttcaccggcaatctctataaagctctttgtgaaaaaggagtccgaaccttcattgacgacaaggagcttcagaaaggtgatgaaatcacaccttcgctcc |
534 |
Q |
| |
|
|||||||| ||||||||||||||||| | ||| || ||| |||||||||||||||| || |||||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
26949595 |
ttcaccggtaatctctataaagctctctctgacaagggaatccgaaccttcattgatgataaggagcttcagaaaggtgacgaaatcacaccttcactcc |
26949694 |
T |
|
| Q |
535 |
tcaagagcattgaaaactcaagaattgccattgttgtcttctctaaagactatgcttcttcttcattttgtttagatgaacttgtccat |
623 |
Q |
| |
|
||||||| |||||| | || |||||||||||| | ||||| ||||| || |||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
26949695 |
tcaagagaattgaagaatcgagaattgccattatcgtcttttctaaggaatatgcttcttcttcattttgtttagacgaacttgtccat |
26949783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 438 - 622
Target Start/End: Original strand, 25071596 - 25071780
Alignment:
| Q |
438 |
accggcaatctctataaagctctttgtgaaaaaggagtccgaaccttcattgacgacaaggagcttcagaaaggtgatgaaatcacaccttcgctcctca |
537 |
Q |
| |
|
||||| ||||| ||||||||||||| ||| |||||| ||| ||||| ||||| ||||| |||||| ||| |||||| ||||||||||||||||||| || |
|
|
| T |
25071596 |
accggtaatctttataaagctctttctgacaaaggaatccacacctttattgatgacaaagagcttaagagaggtgacgaaatcacaccttcgctccgca |
25071695 |
T |
|
| Q |
538 |
agagcattgaaaactcaagaattgccattgttgtcttctctaaagactatgcttcttcttcattttgtttagatgaacttgtcca |
622 |
Q |
| |
|
||||||||||| | || |||||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
25071696 |
agagcattgaagattcgagaattgccattatcgtcttctctaaagactatgcttcttcttcattttgtttagacgaacttgtcca |
25071780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 435 - 622
Target Start/End: Original strand, 26974986 - 26975173
Alignment:
| Q |
435 |
ttcaccggcaatctctataaagctctttgtgaaaaaggagtccgaaccttcattgacgacaaggagcttcagaaaggtgatgaaatcacaccttcgctcc |
534 |
Q |
| |
|
|||||||| || |||||||||||||||| ||| |||||| || | ||||||||| |||||||||||| | ||||| || ||||||||||||||||||| |
|
|
| T |
26974986 |
ttcaccggtaacctctataaagctctttctgacaaaggaatcaacatcttcattgatgacaaggagcttaaaaaaggggacgaaatcacaccttcgctcc |
26975085 |
T |
|
| Q |
535 |
tcaagagcattgaaaactcaagaattgccattgttgtcttctctaaagactatgcttcttcttcattttgtttagatgaacttgtcca |
622 |
Q |
| |
|
|||||||||||||| |||| || ||| ||||| | |||||||||||||||||||||||||||||||||||||| || ||||||||||| |
|
|
| T |
26975086 |
tcaagagcattgaagactcgaggattaccattatcgtcttctctaaagactatgcttcttcttcattttgtttggacgaacttgtcca |
26975173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 435 - 622
Target Start/End: Original strand, 26635624 - 26635811
Alignment:
| Q |
435 |
ttcaccggcaatctctataaagctctttgtgaaaaaggagtccgaaccttcattgacgacaaggagcttcagaaaggtgatgaaatcacaccttcgctcc |
534 |
Q |
| |
|
|||||||| || |||||||||||||||| ||| |||||| || ||||||||||| |||||||||||| | ||||| |||||||||||||||||||||| |
|
|
| T |
26635624 |
ttcaccggtaacctctataaagctctttctgacaaaggaatcaacaccttcattgatgacaaggagcttaaaaaaggggatgaaatcacaccttcgctcc |
26635723 |
T |
|
| Q |
535 |
tcaagagcattgaaaactcaagaattgccattgttgtcttctctaaagactatgcttcttcttcattttgtttagatgaacttgtcca |
622 |
Q |
| |
|
|||||||||||||| | || || ||||||||| | || |||||||| || ||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
26635724 |
tcaagagcattgaagagtcgaggattgccattatcgttttctctaaggaatatgcttcttctttgttttgtttggatgaacttgtcca |
26635811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 435 - 622
Target Start/End: Original strand, 26741590 - 26741777
Alignment:
| Q |
435 |
ttcaccggcaatctctataaagctctttgtgaaaaaggagtccgaaccttcattgacgacaaggagcttcagaaaggtgatgaaatcacaccttcgctcc |
534 |
Q |
| |
|
|||||||| || |||||||||||||||| ||| |||||| || ||||||||||| |||||||||||| | ||||| |||||||||||||||||||||| |
|
|
| T |
26741590 |
ttcaccggtaacctctataaagctctttctgacaaaggaatcaacaccttcattgatgacaaggagcttaaaaaaggggatgaaatcacaccttcgctcc |
26741689 |
T |
|
| Q |
535 |
tcaagagcattgaaaactcaagaattgccattgttgtcttctctaaagactatgcttcttcttcattttgtttagatgaacttgtcca |
622 |
Q |
| |
|
|||||||||||||| | || || ||||||||| | || |||||||| || ||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
26741690 |
tcaagagcattgaagagtcgaggattgccattatcgttttctctaaggaatatgcttcttctttgttttgtttggatgaacttgtcca |
26741777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 373 - 622
Target Start/End: Complemental strand, 27665432 - 27665183
Alignment:
| Q |
373 |
tctcttatgatttcagcttcgatgcgttcgtcagttttcggggggctgatactcgatcgggcttcaccggcaatctctataaagctctttgtgaaaaagg |
472 |
Q |
| |
|
||||||||||||||| |||||||| |||| | ||||| |||| | || ||||||| || |||||||| || |||||||| ||||||| ||| ||||| |
|
|
| T |
27665432 |
tctcttatgatttcaacttcgatgtgttcattagtttcaggggtaccgacactcgatttggtttcaccggtaacctctataaggctctttctgacaaagg |
27665333 |
T |
|
| Q |
473 |
agtccgaaccttcattgacgacaaggagcttcagaaaggtgatgaaatcacaccttcgctcctcaagagcattgaaaactcaagaattgccattgttgtc |
572 |
Q |
| |
|
| ||| ||||||||||| ||||||||||||| | ||||| |||||||||||||| |||| |||||||||||| | || || ||||||||| || | |
|
|
| T |
27665332 |
aatccacaccttcattgatgacaaggagcttccaactggtgacgaaatcacaccttcactccggaagagcattgaagaatcgaggattgccattattata |
27665233 |
T |
|
| Q |
573 |
ttctctaaagactatgcttcttcttcattttgtttagatgaacttgtcca |
622 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
27665232 |
ttctctaagaactatgctacttcttcattttgtttagatgaacttgtcca |
27665183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 435 - 622
Target Start/End: Original strand, 27214351 - 27214538
Alignment:
| Q |
435 |
ttcaccggcaatctctataaagctctttgtgaaaaaggagtccgaaccttcattgacgacaaggagcttcagaaaggtgatgaaatcacaccttcgctcc |
534 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||||| |||||| ||||||||| ||||||||| |
|
|
| T |
27214351 |
ttcaccggtaatctctataaagctctttgtgacaaaggaatccgaaccttcattgatgacaaggagcttcagagaggtgacgaaatcacatcttcgctcc |
27214450 |
T |
|
| Q |
535 |
tcaagagcattgaaaactcaagaattgccattgttgtcttctctaaagactatgcttcttcttcattttgtttagatgaacttgtcca |
622 |
Q |
| |
|
||||| |||||| |||| || ||| | || |||| ||||| | |||||||| |||||||||||||||| || ||||||||||| |
|
|
| T |
27214451 |
acaagaaaattgaagactcgaggatttctgttattgtattctcagagaactatgctacttcttcattttgtttggacgaacttgtcca |
27214538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 435 - 622
Target Start/End: Complemental strand, 27234877 - 27234690
Alignment:
| Q |
435 |
ttcaccggcaatctctataaagctctttgtgaaaaaggagtccgaaccttcattgacgacaaggagcttcagaaaggtgatgaaatcacaccttcgctcc |
534 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||||| |||||| ||||||||| ||||||||| |
|
|
| T |
27234877 |
ttcaccggtaatctctataaagctctttgtgacaaaggaatccgaaccttcattgatgacaaggagcttcagagaggtgacgaaatcacatcttcgctcc |
27234778 |
T |
|
| Q |
535 |
tcaagagcattgaaaactcaagaattgccattgttgtcttctctaaagactatgcttcttcttcattttgtttagatgaacttgtcca |
622 |
Q |
| |
|
||||| |||||| |||| || ||| | || |||| ||||| | |||||||| |||||||||||||||| || ||||||||||| |
|
|
| T |
27234777 |
acaagaaaattgaagactcgaggatttctgttattgtattctcagagaactatgctacttcttcattttgtttggacgaacttgtcca |
27234690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 435 - 622
Target Start/End: Original strand, 26848594 - 26848781
Alignment:
| Q |
435 |
ttcaccggcaatctctataaagctctttgtgaaaaaggagtccgaaccttcattgacgacaaggagcttcagaaaggtgatgaaatcacaccttcgctcc |
534 |
Q |
| |
|
||||| || ||||||||||||||||||| ||| || ||| |||||||||||||||| |||||||| ||||||| |||||||| |||||||||||||||| |
|
|
| T |
26848594 |
ttcactggtaatctctataaagctctttctgacaatggaatccgaaccttcattgatgacaaggatcttcagagtggtgatgagatcacaccttcgctcc |
26848693 |
T |
|
| Q |
535 |
tcaagagcattgaaaactcaagaattgccattgttgtcttctctaaagactatgcttcttcttcattttgtttagatgaacttgtcca |
622 |
Q |
| |
|
|||||| ||||||| |||| || ||| ||||| |||| |||||| | ||||||| ||||||| |||||||| || ||||||||||| |
|
|
| T |
26848694 |
tcaagaacattgaagactcgaggatttccattcttgtattctctgagaactatgccacttcttcgttttgtttggacgaacttgtcca |
26848781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 435 - 622
Target Start/End: Original strand, 26959099 - 26959287
Alignment:
| Q |
435 |
ttcaccggcaatctctataaagctctttgtgaaaaaggagtccgaaccttcattgacgacaaggagcttcagaaaggtgatgaaatcacaccttcgctcc |
534 |
Q |
| |
|
|||||||| || |||||||||||||||| ||| |||||| || ||||||||||| ||||| |||||| | ||||| |||||||||||||||||||| | |
|
|
| T |
26959099 |
ttcaccggtaacctctataaagctctttctgacaaaggaatcgacaccttcattgatgacaaagagcttaaaaaaggggatgaaatcacaccttcgcttc |
26959198 |
T |
|
| Q |
535 |
tc-aagagcattgaaaactcaagaattgccattgttgtcttctctaaagactatgcttcttcttcattttgtttagatgaacttgtcca |
622 |
Q |
| |
|
|| |||||||||||| |||| || ||||||||| | || |||||||| || |||||||||||||| |||| ||| |||||||||||||| |
|
|
| T |
26959199 |
tcaaagagcattgaagactcgaggattgccattatcgttttctctaaggaatatgcttcttcttcgttttatttggatgaacttgtcca |
26959287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 509 - 609
Target Start/End: Original strand, 24715590 - 24715693
Alignment:
| Q |
509 |
aggtgatgaaatcacaccttcgctcctcaagagcattgaaaactcaagaattgccattgttgtcttctctaa---agactatgcttcttcttcattttgt |
605 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| ||| |||| | |||||||||| ||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
24715590 |
aggtgatgaaatcacatcttcgctcctcaagagcatcgaagactcgaaaattgccattattgtcttctctaaattagactatgcttcttcttcattttgt |
24715689 |
T |
|
| Q |
606 |
ttag |
609 |
Q |
| |
|
|||| |
|
|
| T |
24715690 |
ttag |
24715693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 97 - 205
Target Start/End: Original strand, 26861059 - 26861167
Alignment:
| Q |
97 |
agtaaaaatgaaaaagtttaagaactcaaatcaataacatgccacaagagcaacaaagataatggttctgcagtgattttcaccacagtaaaagttgaac |
196 |
Q |
| |
|
|||| ||||||||||||||||||| || ||| |||||| ||||||||| ||| || |||||||||||||| ||||||||| | || ||||||||| | |
|
|
| T |
26861059 |
agtataaatgaaaaagtttaagaagtctaattaataacgtgccacaaggaaaacgaaaataatggttctgcaatgattttcattaaagaaaaagttgatc |
26861158 |
T |
|
| Q |
197 |
aataattga |
205 |
Q |
| |
|
||||||||| |
|
|
| T |
26861159 |
aataattga |
26861167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 207
Target Start/End: Original strand, 26811169 - 26811221
Alignment:
| Q |
155 |
ataatggttctgcagtgattttcaccacagtaaaagttgaacaataattgatc |
207 |
Q |
| |
|
|||||||||||||| |||||||||| | || |||||||||||||||||||||| |
|
|
| T |
26811169 |
ataatggttctgcaatgattttcactaaagaaaaagttgaacaataattgatc |
26811221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 207
Target Start/End: Original strand, 26974603 - 26974663
Alignment:
| Q |
147 |
caacaaagataatggttctgcagtgattttcaccacagtaaaagttgaacaataattgatc |
207 |
Q |
| |
|
||||||| |||||||||||||| ||| |||||| | || |||||||||||||||||||||| |
|
|
| T |
26974603 |
caacaaaaataatggttctgcaatgagtttcacaaaagaaaaagttgaacaataattgatc |
26974663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 151 - 206
Target Start/End: Original strand, 26848236 - 26848291
Alignment:
| Q |
151 |
aaagataatggttctgcagtgattttcaccacagtaaaagttgaacaataattgat |
206 |
Q |
| |
|
|||||||||||||||||| |||||||||| | || ||||||||| ||||||||||| |
|
|
| T |
26848236 |
aaagataatggttctgcaatgattttcactaaagaaaaagttgagcaataattgat |
26848291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 573 - 623
Target Start/End: Original strand, 2184970 - 2185020
Alignment:
| Q |
573 |
ttctctaaagactatgcttcttcttcattttgtttagatgaacttgtccat |
623 |
Q |
| |
|
||||| || |||||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
2184970 |
ttctcaaaggactatgcttcttcttcattttgtttggacgaacttgtccat |
2185020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 444 - 622
Target Start/End: Complemental strand, 28098613 - 28098435
Alignment:
| Q |
444 |
aatctctataaagctctttgtgaaaaaggagtccgaaccttcattgacgacaaggagcttcagaaaggtgatgaaatcacaccttcgctcctcaagagca |
543 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||| |||||||||||| | || || ||||| |||||||| |||||||| || || ||||| || |
|
|
| T |
28098613 |
aatctctacaaagctctttgtgacggaggagtccgcaccttcattgaccataaagatcttcatgaaggtgatagaatcacacaatcccttgtcaaggcca |
28098514 |
T |
|
| Q |
544 |
ttgaaaactcaagaattgccattgttgtcttctctaaagactatgcttcttcttcattttgtttagatgaacttgtcca |
622 |
Q |
| |
|
| ||| | || || ||| ||| ||||||||||| ||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
28098513 |
tcgaagagtccaggattttaattccggtcttctctaagaactatgcttcttctttgttttgtttggatgaacttgtcca |
28098435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 468 - 526
Target Start/End: Complemental strand, 28491740 - 28491682
Alignment:
| Q |
468 |
aaaggagtccgaaccttcattgacgacaaggagcttcagaaaggtgatgaaatcacacc |
526 |
Q |
| |
|
||||||||||| || ||||| |||||| |||||||||| |||||||| ||||||||||| |
|
|
| T |
28491740 |
aaaggagtccgtactttcatggacgacgaggagcttcaaaaaggtgaagaaatcacacc |
28491682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 468 - 526
Target Start/End: Complemental strand, 29804150 - 29804092
Alignment:
| Q |
468 |
aaaggagtccgaaccttcattgacgacaaggagcttcagaaaggtgatgaaatcacacc |
526 |
Q |
| |
|
||||||||||| || ||||| |||||| |||||||||| |||||||| ||||||||||| |
|
|
| T |
29804150 |
aaaggagtccgtactttcatggacgacgaggagcttcaaaaaggtgaagaaatcacacc |
29804092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 438 - 539
Target Start/End: Original strand, 28781076 - 28781177
Alignment:
| Q |
438 |
accggcaatctctataaagctctttgtgaaaaaggagtccgaaccttcattgacgacaaggagcttcagaaaggtgatgaaatcacaccttcgctcctca |
537 |
Q |
| |
|
|||||||||||||| || |||||| ||| || ||| || |||||||||||| ||||| || ||||| | ||| |||||||||||||| || ||||||| |
|
|
| T |
28781076 |
accggcaatctctacaaggctcttactgacaagggaatcaaaaccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcctca |
28781175 |
T |
|
| Q |
538 |
ag |
539 |
Q |
| |
|
|| |
|
|
| T |
28781176 |
ag |
28781177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 583 - 622
Target Start/End: Original strand, 2184370 - 2184409
Alignment:
| Q |
583 |
actatgcttcttcttcattttgtttagatgaacttgtcca |
622 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||||||| |
|
|
| T |
2184370 |
actatgcttcttcttcattttgtttggacgaacttgtcca |
2184409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 435 - 526
Target Start/End: Complemental strand, 29679795 - 29679704
Alignment:
| Q |
435 |
ttcaccggcaatctctataaagctctttgtgaaaaaggagtccgaaccttcattgacgacaaggagcttcagaaaggtgatgaaatcacacc |
526 |
Q |
| |
|
||||| ||||| |||| ||||||||| ||| ||||||||| |||| ||||| || ||| || | ||||||||||| |||||||||||||| |
|
|
| T |
29679795 |
ttcactggcaacctctggaaagctcttgatgacaaaggagtcagaactttcatggatgacgagaatcttcagaaaggggatgaaatcacacc |
29679704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 228 - 281
Target Start/End: Original strand, 26974753 - 26974804
Alignment:
| Q |
228 |
gaagaaagtttcgccactaatgttaaataaatggacactcgtaaataactctta |
281 |
Q |
| |
|
|||| ||||||||| |||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
26974753 |
gaaggaagtttcgctactaatgttaaa--aatggacactcataaataactctta |
26974804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 147 - 204
Target Start/End: Original strand, 26958791 - 26958848
Alignment:
| Q |
147 |
caacaaagataatggttctgcagtgattttcaccacagtaaaagttgaacaataattg |
204 |
Q |
| |
|
||||||| |||||||||||| | ||| |||||| | || ||||||||||||||||||| |
|
|
| T |
26958791 |
caacaaaaataatggttctgtaatgagtttcacaaaagaaaaagttgaacaataattg |
26958848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 204
Target Start/End: Complemental strand, 27667911 - 27667862
Alignment:
| Q |
155 |
ataatggttctgcagtgattttcaccacagtaaaagttgaacaataattg |
204 |
Q |
| |
|
||||||||||||||||| |||||| | || ||||||||||||||||||| |
|
|
| T |
27667911 |
ataatggttctgcagtgtttttcagtaaagaaaaagttgaacaataattg |
27667862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 438 - 539
Target Start/End: Complemental strand, 27698744 - 27698643
Alignment:
| Q |
438 |
accggcaatctctataaagctctttgtgaaaaaggagtccgaaccttcattgacgacaaggagcttcagaaaggtgatgaaatcacaccttcgctcctca |
537 |
Q |
| |
|
||||| |||||||| || |||||| ||| || ||| ||| ||||||||||| ||||| || ||||| | ||| |||||||||||||| || ||||||| |
|
|
| T |
27698744 |
accggaaatctctacaaggctcttactgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcctca |
27698645 |
T |
|
| Q |
538 |
ag |
539 |
Q |
| |
|
|| |
|
|
| T |
27698644 |
ag |
27698643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 438 - 539
Target Start/End: Complemental strand, 27718629 - 27718528
Alignment:
| Q |
438 |
accggcaatctctataaagctctttgtgaaaaaggagtccgaaccttcattgacgacaaggagcttcagaaaggtgatgaaatcacaccttcgctcctca |
537 |
Q |
| |
|
||||| |||||||| || |||||| ||| || ||| ||| ||||||||||| ||||| || ||||| | ||| |||||||||||||| || ||||||| |
|
|
| T |
27718629 |
accggaaatctctacaaggctcttactgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcctca |
27718530 |
T |
|
| Q |
538 |
ag |
539 |
Q |
| |
|
|| |
|
|
| T |
27718529 |
ag |
27718528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 438 - 539
Target Start/End: Complemental strand, 27725095 - 27724994
Alignment:
| Q |
438 |
accggcaatctctataaagctctttgtgaaaaaggagtccgaaccttcattgacgacaaggagcttcagaaaggtgatgaaatcacaccttcgctcctca |
537 |
Q |
| |
|
||||| |||||||| || |||||| ||| || ||| ||| ||||||||||| ||||| || ||||| | ||| |||||||||||||| || ||||||| |
|
|
| T |
27725095 |
accggaaatctctacaaggctcttactgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcctca |
27724996 |
T |
|
| Q |
538 |
ag |
539 |
Q |
| |
|
|| |
|
|
| T |
27724995 |
ag |
27724994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 438 - 539
Target Start/End: Original strand, 28786215 - 28786316
Alignment:
| Q |
438 |
accggcaatctctataaagctctttgtgaaaaaggagtccgaaccttcattgacgacaaggagcttcagaaaggtgatgaaatcacaccttcgctcctca |
537 |
Q |
| |
|
||||| |||||||| || |||||| ||| || ||| || |||||||||||| ||||| || ||||| | ||| |||||||||||||| || ||||||| |
|
|
| T |
28786215 |
accggaaatctctacaaggctcttactgacaagggaatcaaaaccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcctca |
28786314 |
T |
|
| Q |
538 |
ag |
539 |
Q |
| |
|
|| |
|
|
| T |
28786315 |
ag |
28786316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 438 - 539
Target Start/End: Original strand, 28792336 - 28792437
Alignment:
| Q |
438 |
accggcaatctctataaagctctttgtgaaaaaggagtccgaaccttcattgacgacaaggagcttcagaaaggtgatgaaatcacaccttcgctcctca |
537 |
Q |
| |
|
||||| |||||||| || |||||| ||| || ||| || |||||||||||| ||||| || ||||| | ||| |||||||||||||| || ||||||| |
|
|
| T |
28792336 |
accggaaatctctacaaggctcttactgacaagggaatcaaaaccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcctca |
28792435 |
T |
|
| Q |
538 |
ag |
539 |
Q |
| |
|
|| |
|
|
| T |
28792436 |
ag |
28792437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #34
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 146 - 206
Target Start/End: Complemental strand, 27310371 - 27310311
Alignment:
| Q |
146 |
gcaacaaagataatggttctgcagtgattttcaccacagtaaaagttgaacaataattgat |
206 |
Q |
| |
|
||||||| ||||||||||| || |||||||||| | || ||||||||||| ||||||||| |
|
|
| T |
27310371 |
gcaacaagaataatggttcttcaatgattttcactaaagaaaaagttgaacgataattgat |
27310311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 128; Significance: 8e-66; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 128; E-Value: 8e-66
Query Start/End: Original strand, 375 - 622
Target Start/End: Complemental strand, 17993997 - 17993750
Alignment:
| Q |
375 |
tcttatgatttcagcttcgatgcgttcgtcagttttcggggggctgatactcgatcgggcttcaccggcaatctctataaagctctttgtgaaaaaggag |
474 |
Q |
| |
|
||||||| |||||||||||||| |||| | ||||| |||| | |||||||||| || |||||||| ||||||||||||||||||| ||| || ||| |
|
|
| T |
17993997 |
tcttatggtttcagcttcgatgtgttcattagtttcaggggtaccgatactcgatatggtttcaccggtaatctctataaagctctttctgacaagggaa |
17993898 |
T |
|
| Q |
475 |
tccgaaccttcattgacgacaaggagcttcagaaaggtgatgaaatcacaccttcgctcctcaagagcattgaaaactcaagaattgccattgttgtctt |
574 |
Q |
| |
|
| ||||||||||| || ||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||| | ||||| |
|
|
| T |
17993897 |
ttcgaaccttcatcgatgacaaagagcttcagagaggtgatgaaatcacaccgtcgctcctcaagagcattgaagactcaagaattgcgattatcgtctt |
17993798 |
T |
|
| Q |
575 |
ctctaaagactatgcttcttcttcattttgtttagatgaacttgtcca |
622 |
Q |
| |
|
||| || ||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
17993797 |
ctcaaaggactatgcttcttcttcattttgtttagacgaacttgtcca |
17993750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 147 - 206
Target Start/End: Complemental strand, 17994315 - 17994256
Alignment:
| Q |
147 |
caacaaagataatggttctgcagtgattttcaccacagtaaaagttgaacaataattgat |
206 |
Q |
| |
|
||||||| |||||||||||||| ||||||||| | || ||||||||||||||||||||| |
|
|
| T |
17994315 |
caacaaaaataatggttctgcaatgattttcagtaaagaaaaagttgaacaataattgat |
17994256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 558 - 620
Target Start/End: Original strand, 31903908 - 31903970
Alignment:
| Q |
558 |
attgccattgttgtcttctctaaagactatgcttcttcttcattttgtttagatgaacttgtc |
620 |
Q |
| |
|
||||||||| |||| |||||||| |||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
31903908 |
attgccattattgtgctctctaaaaactatgcttcttcttcattttgcttacatgaacttgtc |
31903970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 435 - 604
Target Start/End: Original strand, 12588380 - 12588549
Alignment:
| Q |
435 |
ttcaccggcaatctctataaagctctttgtgaaaaaggagtccgaaccttcattgacgacaaggagcttcagaaaggtgatgaaatcacaccttcgctcc |
534 |
Q |
| |
|
||||| ||||||||| | |||||||| ||| |||||||| ||||| ||||| || ||||||||| || | ||||| || ||||||||||| || || | |
|
|
| T |
12588380 |
ttcactggcaatctcaagaaagctctagatgacaaaggagttcgaactttcatggatgacaaggagattaaaaaaggcgaagaaatcacaccatcacttc |
12588479 |
T |
|
| Q |
535 |
tcaagagc-attgaaaactcaagaattgccattgttgtcttctctaaagactatgcttcttcttcattttg |
604 |
Q |
| |
|
|||| ||| |||||| |||| | || ||||| |||||| ||||||| | ||||||||||| || ||||| |
|
|
| T |
12588480 |
tcaa-agcaattgaagactccaagatggccatcgttgtcctctctaagaattatgcttcttcctccttttg |
12588549 |
T |
|
Back To:
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Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 573 - 623
Target Start/End: Complemental strand, 5091069 - 5091019
Alignment:
| Q |
573 |
ttctctaaagactatgcttcttcttcattttgtttagatgaacttgtccat |
623 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
5091069 |
ttctctaaccactatgcttcttcttcgttttgtttagatgaacttgtccat |
5091019 |
T |
|
Back To:
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Target: scaffold1254 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold1254
Description:
Target: scaffold1254; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 438 - 539
Target Start/End: Complemental strand, 167 - 66
Alignment:
| Q |
438 |
accggcaatctctataaagctctttgtgaaaaaggagtccgaaccttcattgacgacaaggagcttcagaaaggtgatgaaatcacaccttcgctcctca |
537 |
Q |
| |
|
|||||||||||||| || |||||| ||| || ||| || |||||||||||| ||||| || ||||| | ||| |||||||||||||| || ||||||| |
|
|
| T |
167 |
accggcaatctctacaaggctcttactgacaagggaatcaaaaccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcctca |
68 |
T |
|
| Q |
538 |
ag |
539 |
Q |
| |
|
|| |
|
|
| T |
67 |
ag |
66 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0419 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0419
Description:
Target: scaffold0419; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 438 - 539
Target Start/End: Original strand, 7462 - 7563
Alignment:
| Q |
438 |
accggcaatctctataaagctctttgtgaaaaaggagtccgaaccttcattgacgacaaggagcttcagaaaggtgatgaaatcacaccttcgctcctca |
537 |
Q |
| |
|
|||||||||||||| || |||||| ||| || ||| || |||||||||||| ||||| || ||||| | ||| |||||||||||||| || ||||||| |
|
|
| T |
7462 |
accggcaatctctacaaggctcttactgacaagggaatcaaaaccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcctca |
7561 |
T |
|
| Q |
538 |
ag |
539 |
Q |
| |
|
|| |
|
|
| T |
7562 |
ag |
7563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0277 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0277
Description:
Target: scaffold0277; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 438 - 539
Target Start/End: Complemental strand, 13882 - 13781
Alignment:
| Q |
438 |
accggcaatctctataaagctctttgtgaaaaaggagtccgaaccttcattgacgacaaggagcttcagaaaggtgatgaaatcacaccttcgctcctca |
537 |
Q |
| |
|
|||||||||||||| || |||||| ||| || ||| || |||||||||||| ||||| || ||||| | ||| |||||||||||||| || ||||||| |
|
|
| T |
13882 |
accggcaatctctacaaggctcttactgacaagggaatcaaaaccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcctca |
13783 |
T |
|
| Q |
538 |
ag |
539 |
Q |
| |
|
|| |
|
|
| T |
13782 |
ag |
13781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 480 - 608
Target Start/End: Complemental strand, 5924565 - 5924437
Alignment:
| Q |
480 |
accttcattgacgacaaggagcttcagaaaggtgatgaaatcacaccttcgctcctcaagagc-attgaaaactcaagaattgccattgttgtcttctct |
578 |
Q |
| |
|
|||||||| |||||| | | ||||| |||||||| |||||||||| || || ||||| ||| |||||||| |||||||||||||||||||| | || |
|
|
| T |
5924565 |
accttcatcgacgacgatcatcttcaaaaaggtgaccaaatcacaccctcacttctcaa-agctattgaaaattcaagaattgccattgttgtgctatcc |
5924467 |
T |
|
| Q |
579 |
aaagactatgcttcttcttcattttgttta |
608 |
Q |
| |
|
||| ||||||| ||||| || ||||||||| |
|
|
| T |
5924466 |
aaaaactatgcgtcttcgtctttttgttta |
5924437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0349 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0349
Description:
Target: scaffold0349; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 438 - 539
Target Start/End: Complemental strand, 3672 - 3571
Alignment:
| Q |
438 |
accggcaatctctataaagctctttgtgaaaaaggagtccgaaccttcattgacgacaaggagcttcagaaaggtgatgaaatcacaccttcgctcctca |
537 |
Q |
| |
|
||||| |||||||| || |||||| ||| || ||| ||| ||||||||||| ||||| || ||||| | ||| |||||||||||||| || ||||||| |
|
|
| T |
3672 |
accggaaatctctacaaggctcttactgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcctca |
3573 |
T |
|
| Q |
538 |
ag |
539 |
Q |
| |
|
|| |
|
|
| T |
3572 |
ag |
3571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0349; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 438 - 539
Target Start/End: Complemental strand, 14605 - 14504
Alignment:
| Q |
438 |
accggcaatctctataaagctctttgtgaaaaaggagtccgaaccttcattgacgacaaggagcttcagaaaggtgatgaaatcacaccttcgctcctca |
537 |
Q |
| |
|
||||| |||||||| || |||||| ||| || ||| ||| ||||||||||| ||||| || ||||| | ||| |||||||||||||| || ||||||| |
|
|
| T |
14605 |
accggaaatctctacaaggctcttactgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcctca |
14506 |
T |
|
| Q |
538 |
ag |
539 |
Q |
| |
|
|| |
|
|
| T |
14505 |
ag |
14504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 453 - 617
Target Start/End: Complemental strand, 241916 - 241752
Alignment:
| Q |
453 |
aaagctctttgtgaaaaaggagtccgaaccttcattgacgacaaggagcttcagaaaggtgatgaaatcacaccttcgctcctcaagagc-attgaaaac |
551 |
Q |
| |
|
||||||||| ||| |||||| | ||||| ||||| || |||||||||||| |||||||| ||||||||||| || || ||||| ||| |||||| || |
|
|
| T |
241916 |
aaagctcttgatgacaaaggaattcgaactttcatggatgacaaggagcttagaaaaggtgaagaaatcacaccatcacttctcaa-agcaattgaagac |
241818 |
T |
|
| Q |
552 |
tcaagaattgccattgttgtcttctctaaagactatgcttcttcttcattttgtttagatgaactt |
617 |
Q |
| |
|
|| | || |||||||||||| ||||||| | |||||||| || || ||||| ||| | |||||| |
|
|
| T |
241817 |
tccatgatggccattgttgtcctctctaagaattatgcttcctcctccttttgcttacaagaactt |
241752 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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