View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8334_low_20 (Length: 234)
Name: NF8334_low_20
Description: NF8334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8334_low_20 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 14 - 234
Target Start/End: Complemental strand, 12276428 - 12276207
Alignment:
| Q |
14 |
aaattcataagtacaattgctagcaccaaaaagaaattcttcagcgttgtagctttgtaacaggacagtgctccattgccttcttctatctcaattgcta |
113 |
Q |
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| T |
12276428 |
aaattcataagtacaattgctagcaccaaaaagaaattcttcagcgttgtagctttgtaacaggacagtgctccattgccttcttctatctcaattgcta |
12276329 |
T |
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| Q |
114 |
gcac------ttatcgcnnnnnnnttgattttaagtttaattacattacctgaaaccaaattgctaaaaatattgacgcaagaaatacacaagtaagaac |
207 |
Q |
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|||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12276328 |
gcacttaaaattatcgcaaaaaaattgattttaagttta-----attacctgaaaccaaattgctaaaaatattgacgcaagaaatacacaagtaagaac |
12276234 |
T |
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| Q |
208 |
caaagacaaattcatacaaacttaact |
234 |
Q |
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||||||||||||||||||||||||||| |
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| T |
12276233 |
caaagacaaattcatacaaacttaact |
12276207 |
T |
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