View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8334_low_4 (Length: 626)

Name: NF8334_low_4
Description: NF8334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8334_low_4
NF8334_low_4
[»] chr7 (7 HSPs)
chr7 (18-608)||(4584435-4585026)
chr7 (18-108)||(4592179-4592269)
chr7 (18-103)||(4573208-4573293)
chr7 (280-370)||(4592482-4592571)
chr7 (23-87)||(4600618-4600682)
chr7 (108-159)||(4592329-4592380)
chr7 (195-252)||(4592410-4592467)


Alignment Details
Target: chr7 (Bit Score: 548; Significance: 0; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 548; E-Value: 0
Query Start/End: Original strand, 18 - 608
Target Start/End: Original strand, 4584435 - 4585026
Alignment:
Q  18 ttctcaagagttttgaaagctgttttagtacaatgtgacaaatcctgtcaaagaatatgtagaatgagattaatctagacaaatgttttaccctgtcatg 117  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  4584435 ttctcaagagttttgaaagctgtttcagtacaatgtgacaaatcctgtcaaagaatatgtagaatgagattaatctagacaaatattttaccctgtcatg 4584534  T
Q  118 atttgcagtcagcatttcctactgttgtaatctcggccatatatgaagatcagatggttataattttaagttttatgtaaatccgatttcaaaattcaaa 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  4584535 atttgcagtcagcatttcctactgttgtaatctcggccatatatgaagatcggatggttataattttaagttttatgtaaatccgatttcaaaattcaaa 4584634  T
Q  218 acacaaactgtccgtatttcatctaacattccataatgttagcaatctggattcaatcttagtgactgcattcaatctggattgataatattagtattcc 317  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4584635 acacaaactgtccgtatttcatctaacattccataatgtcagcaatctggattcaatcttagtgactgcattcaatctggattgataatattagtattcc 4584734  T
Q  318 ataatgtacagatgtagcagacgaagttgatgcgttttcgtattaaactagttccaattaaagtagctatataccatttatgattttaaatcacagtccg 417  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||    
T  4584735 ataatgcacagatgtagcagacgaagttgatgcgttttcgtattaaactagttccgattaaagtagctatataccacttatgattttaaatcacagtccg 4584834  T
Q  418 cagccataatgcagacgtagtataacatattttgagatctttgcaacgtcattgcagcagttatcttgactgtatcatccacagtttgccgtaatataaa 517  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  4584835 cagccataatgcagacgtagtataacatattttgagatctttgcaacgtcattgcagcagttatcttgactgtatcgtccacagtttgccgtaatataaa 4584934  T
Q  518 ggttggcaatgtaaccgcgtcagtaaattaaaagcatgataccactaaaaatggaactaaaatgaaaatctgaaagcttgat-atccctaat 608  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||    
T  4584935 ggttggcaatgtaaccgcgtcagtaaattaaaagcatgataccagtaaaaatggaactaaaatgaaaatctgaaagcttgataatccctaat 4585026  T

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Target: chr7; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 18 - 108
Target Start/End: Original strand, 4592179 - 4592269
Alignment:
Q  18 ttctcaagagttttgaaagctgttttagtacaatgtgacaaatcctgtcaaagaatatgtagaatgagattaatctagacaaatgttttac 108  Q
    ||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  4592179 ttctcaagagttttgaaagctgtttcagtacaatgagacatatcctgtcaaagaatatgtagaatgagattaatctagaccaatgttttac 4592269  T

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Target: chr7; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 18 - 103
Target Start/End: Original strand, 4573208 - 4573293
Alignment:
Q  18 ttctcaagagttttgaaagctgttttagtacaatgtgacaaatcctgtcaaagaatatgtagaatgagattaatctagacaaatgt 103  Q
    ||||||| ||||| ||||||||||| |||||||||||| | ||||||||||||||||||||| ||||||||||||||||| |||||    
T  4573208 ttctcaacagtttggaaagctgtttcagtacaatgtgatatatcctgtcaaagaatatgtaggatgagattaatctagaccaatgt 4573293  T

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Target: chr7; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 280 - 370
Target Start/End: Original strand, 4592482 - 4592571
Alignment:
Q  280 tgactgcattcaatctggattgataatattagtattccataatgtacagatgtagcagacgaagttgatgcgttttcgtattaaactagtt 370  Q
    |||||||| ||||||||||| |||| ||| |||||||||||||||||||||||||||||| ||||||||| |||||  |||||||||||||    
T  4592482 tgactgcagtcaatctggatcgatagtat-agtattccataatgtacagatgtagcagaccaagttgatgtgtttttatattaaactagtt 4592571  T

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Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 23 - 87
Target Start/End: Original strand, 4600618 - 4600682
Alignment:
Q  23 aagagttttgaaagctgttttagtacaatgtgacaaatcctgtcaaagaatatgtagaatgagat 87  Q
    |||||||||||||| ||||| ||||||||||||||  | ||||||||||||||||||||||||||    
T  4600618 aagagttttgaaagttgtttcagtacaatgtgacaggttctgtcaaagaatatgtagaatgagat 4600682  T

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Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 108 - 159
Target Start/End: Original strand, 4592329 - 4592380
Alignment:
Q  108 ccctgtcatgatttgcagtcagcatttcctactgttgtaatctcggccatat 159  Q
    |||||||||||||||| |||||||||||||||||| ||| ||||||||||||    
T  4592329 ccctgtcatgatttgctgtcagcatttcctactgtggtagtctcggccatat 4592380  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 252
Target Start/End: Original strand, 4592410 - 4592467
Alignment:
Q  195 taaatccgatttcaaaattcaaaacacaaactgtccgtatttcatctaacattccata 252  Q
    |||||| |||||||||||| ||||||||||| || |||| ||| ||||||| ||||||    
T  4592410 taaatcagatttcaaaatttaaaacacaaaccgttcgtacttcctctaacaatccata 4592467  T

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