View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8334_low_7 (Length: 455)
Name: NF8334_low_7
Description: NF8334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8334_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 169; Significance: 2e-90; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 24 - 294
Target Start/End: Complemental strand, 42121860 - 42121594
Alignment:
| Q |
24 |
tgccatcaaaagttatcatgttttttgtgtattatgttactcaatgaaatttcacaattgtgctgtcatgaaaattatgttgcgtacttatgcgcataac |
123 |
Q |
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| T |
42121860 |
tgccatcaaaagttatcatgttttctgtgtattatcttactcaaagaaatttcacaactgtgctgtcatgaaaattatgctgcgcacttatgc--agaac |
42121763 |
T |
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| Q |
124 |
agattctgaagtggtgtgattggctaatgcttgagatgaacatatatatacatgagaattggtgggagaatatgtagtacaaagaggtagcaatgtggaa |
223 |
Q |
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| T |
42121762 |
agattccaaagtagcgtgatgggctattgcttgagatgaacatatatatacatgaaaattggtgggagaat--gtagtacaaagaggcagcaatttggaa |
42121665 |
T |
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| Q |
224 |
tcgtgatatgctgctgggtggaagcaccaacgaatctttataatgttacaatcataataacaagactgtaa |
294 |
Q |
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| T |
42121664 |
tcgtgatatgctgctgcatggaagcaccaatgaatctttataatgttaccatcataataacaagactgtaa |
42121594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 314 - 416
Target Start/End: Complemental strand, 42121494 - 42121392
Alignment:
| Q |
314 |
aatatacaatcttttgtgaatattgactcttctttcagaggttatttggtgtgtctctggctttacctgtttgctatgaaagttcaccaatcaaactgat |
413 |
Q |
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|||||||||||||||||||||||| | | ||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
42121494 |
aatatacaatcttttgtgaatattcaatattctttcagaggttatttggtatgtccgtggctttacctgtttactatgaaagttcaccaatcaaactgat |
42121395 |
T |
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| Q |
414 |
ttt |
416 |
Q |
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||| |
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| T |
42121394 |
ttt |
42121392 |
T |
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