View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8334_low_8 (Length: 378)
Name: NF8334_low_8
Description: NF8334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8334_low_8 |
 | |
|
| [»] scaffold0257 (1 HSPs) |
| | |
|
| [»] scaffold0043 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0257 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: scaffold0257
Description:
Target: scaffold0257; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 12 - 359
Target Start/End: Complemental strand, 17734 - 17387
Alignment:
| Q |
12 |
tggtgttgatgctgaaggcagagatagtttttgacaattccgtatgaaacggtattttacagcttgaaattgaattcccagggcatgactgaggcttggt |
111 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
17734 |
tggtgttgatgctgaagccagagatagtttttgacaattctgtatgaaacggtattttacagcttgaaattgaattccctgggcatgactgagtcttggt |
17635 |
T |
|
| Q |
112 |
agattttcaaatactacaaattttagatttggaatctccactttgtgatcatcaccttcacttgcagatatttcctctagctcatctgcttctcttatca |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17634 |
agattttcaaatactacaaattttagatttggaatctccattttgtgatcatcaccttcacttgcagatatttcctctagctcatctgcttctcttatca |
17535 |
T |
|
| Q |
212 |
ctagacactttagctcaggaaactctttacatatggagattggaaagacatatttcaacttgttgcactttattacagcaatttcttttagctttgggaa |
311 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| || |||||||||||| |
|
|
| T |
17534 |
ctagacactttagctcaggaagctctttacatatggagattggaaacacatatttcaacttgttgcactttactacagcaagagattgtagctttgggaa |
17435 |
T |
|
| Q |
312 |
gcatgtctttgttgtattctccaaatcatcttcaataatatgcctcaa |
359 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
17434 |
gcatatctttgttgtattctccaaatcatcttcaatgatatgcttcaa |
17387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 37)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 14 - 359
Target Start/End: Complemental strand, 28053878 - 28053533
Alignment:
| Q |
14 |
gtgttgatgctgaaggcagagatagtttttgacaattccgtatgaaacggtattttacagcttgaaattgaattcccagggcatgactgaggcttggtag |
113 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||| |||||||||| | ||||||||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
28053878 |
gtgttgatgctgaagtcagagatagtttttgacaattcagtatgaaacgatgttttacagcttgaaattgaattccctggtcatgactgaggcttggtag |
28053779 |
T |
|
| Q |
114 |
attttcaaatactacaaattttagatttggaatctccactttgtgatcatcaccttcacttgcagatatttcctctagctcatctgcttctcttatcact |
213 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
28053778 |
attttcaaatactacaagttttagatttggaatctccactttgtgatcatcactttcacttacaaatatttcctctagctcatctgcttctcttatcact |
28053679 |
T |
|
| Q |
214 |
agacactttagctcaggaaactctttacatatggagattggaaagacatatttcaacttgttgcactttattacagcaatttcttttagctttgggaagc |
313 |
Q |
| |
|
||| | || | |||| |||| || |||||||||||||||| ||||||||||||||||| ||||||| |||| |||| |||| ||||||||||| |
|
|
| T |
28053678 |
agagccactaaatggggaagctctctaaatatggagattggaaacacatatttcaacttgttacactttactacaaaaattgtatttaactttgggaagc |
28053579 |
T |
|
| Q |
314 |
atgtctttgttgtattctccaaatcatcttcaataatatgcctcaa |
359 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
28053578 |
atgtctttgctgtattctccaaatcatcttcaaaaatatgcttcaa |
28053533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 14 - 359
Target Start/End: Complemental strand, 28064303 - 28063958
Alignment:
| Q |
14 |
gtgttgatgctgaaggcagagatagtttttgacaattccgtatgaaacggtattttacagcttgaaattgaattcccagggcatgactgaggcttggtag |
113 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||| |||||||||| | ||||||||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
28064303 |
gtgttgatgctgaagtcagagatagtttttgacaattcagtatgaaacgatgttttacagcttgaaattgaattccctggtcatgactgaggcttggtag |
28064204 |
T |
|
| Q |
114 |
attttcaaatactacaaattttagatttggaatctccactttgtgatcatcaccttcacttgcagatatttcctctagctcatctgcttctcttatcact |
213 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
28064203 |
attttcaaatactacaagttttagatttggaatctccactttgtgatcatcactttcacttacaaatatttcctctagctcatctgcttctcttatcact |
28064104 |
T |
|
| Q |
214 |
agacactttagctcaggaaactctttacatatggagattggaaagacatatttcaacttgttgcactttattacagcaatttcttttagctttgggaagc |
313 |
Q |
| |
|
||| | || | |||| |||| || |||||||||||||||| ||||||||||||||||| ||||||| |||| |||| |||| ||||||||||| |
|
|
| T |
28064103 |
agagccactaaatggggaagctctctaaatatggagattggaaacacatatttcaacttgttacactttactacaaaaattgtatttaactttgggaagc |
28064004 |
T |
|
| Q |
314 |
atgtctttgttgtattctccaaatcatcttcaataatatgcctcaa |
359 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
28064003 |
atgtctttgctgtattctccaaatcatcttcaaaaatatgcttcaa |
28063958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 15 - 359
Target Start/End: Complemental strand, 28002580 - 28002236
Alignment:
| Q |
15 |
tgttgatgctgaaggcagagatagtttttgacaattccgtatgaaacggtattttacagcttgaaattgaattcccagggcatgactgaggcttggtaga |
114 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| |||||| ||| | ||||||||||| ||||||||||||| | |||||| ||||||| ||||| |
|
|
| T |
28002580 |
tgttgatgctgaagtcagagatagtttttgacaattcagtatgagacgatgttttacagcttcaaattgaattccctgatcatgacagaggcttcgtaga |
28002481 |
T |
|
| Q |
115 |
ttttcaaatactacaaattttagatttggaatctccactttgtgatcatcaccttcacttgcagatatttcctctagctcatctgcttctcttatcacta |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |||||||||||| ||| |||||||||||||| | |
|
|
| T |
28002480 |
ttttcaaatactacaaattttagatttggaatctcgactttgtgatcatcaccttcacttccaaatatttcctctacctcgtctgcttctcttatggtca |
28002381 |
T |
|
| Q |
215 |
gacactttagctcaggaaactctttacatatggagattggaaagacatatttcaacttgttgcactttattacagcaatttcttttagctttgggaagca |
314 |
Q |
| |
|
|| ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |||| || | | |||||||||||||||| |
|
|
| T |
28002380 |
gaacatttagctcaggaagctctttacatatggagattggaaacacatatttcaacttgttgcacttttctacaaaaagtattcttagctttgggaagca |
28002281 |
T |
|
| Q |
315 |
tgtctttgttgtattctccaaatcatcttcaataatatgcctcaa |
359 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
28002280 |
tgtctttgttgtattctccaaatcatcttcaataatatgcttcaa |
28002236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 21 - 359
Target Start/End: Original strand, 28510530 - 28510868
Alignment:
| Q |
21 |
tgctgaaggcagagatagtttttgacaattccgtatgaaacggtattttacagcttgaaattgaattcccagggcatgactgaggcttggtagattttca |
120 |
Q |
| |
|
|||||||| |||||| ||||||||||||||| ||| ||||| | ||||||||||||||||||||||||| | |||||| ||||||||||||||||||| |
|
|
| T |
28510530 |
tgctgaagccagagagagtttttgacaattcattattaaacgatgttttacagcttgaaattgaattccctgagcatgatagaggcttggtagattttca |
28510629 |
T |
|
| Q |
121 |
aatactacaaattttagatttggaatctccactttgtgatcatcaccttcacttgcagatatttcctctagctcatctgcttctcttatcactagacact |
220 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |||||||||||||||||| | ||| |
|
|
| T |
28510630 |
aatattacaagttttagatttggaatctccactttgtgatcatcaccttcacttacaaatatttcctctaactcatctgcttctcttatgatcagaacaa |
28510729 |
T |
|
| Q |
221 |
ttagctcaggaaactctttacatatggagattggaaagacatatttcaacttgttgcactttattacagcaatttcttttagctttgggaagcatgtctt |
320 |
Q |
| |
|
||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||| | | |||| ||||||||||||||||| |
|
|
| T |
28510730 |
ttagctctggaagctctttagatatggagattggaaagacatatttcaacttgttgcactttactacaacaagtattcttagttttgggaagcatgtctt |
28510829 |
T |
|
| Q |
321 |
tgttgtattctccaaatcatcttcaataatatgcctcaa |
359 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
28510830 |
tgttgtattctccaaatcatcttcaataatatgcttcaa |
28510868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 30 - 327
Target Start/End: Complemental strand, 28184154 - 28183857
Alignment:
| Q |
30 |
cagagatagtttttgacaattccgtatgaaacggtattttacagcttgaaattgaattcccagggcatgactgaggcttggtagattttcaaatactaca |
129 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28184154 |
cagagagagtttttgacaattccgtatgaaacgattttttacagcttgaaattgaattctctgggcatgactgaggcttggtagattttcaaatactaca |
28184055 |
T |
|
| Q |
130 |
aattttagatttggaatctccactttgtgatcatcaccttcacttgcagatatttcctctagctcatctgcttctcttatcactagacactttagctcag |
229 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||| || |||||||||| |||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
28184054 |
cattctagatttggaatctccactttgtgatcatcaccttcacttacaaatatttcctccagctcatctgcttctcttatcatcagaacatttagctcag |
28183955 |
T |
|
| Q |
230 |
gaaactctttacatatggagattggaaagacatatttcaacttgttgcactttattacagcaatttcttttagctttgggaagcatgtctttgttgta |
327 |
Q |
| |
|
||| |||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||| || || ||||||||||||| |||||||||||||| |
|
|
| T |
28183954 |
gaagctctttacatatggagattggaaacacatatttcaacttgttgcacttttctacaacaactttttctagctttgggaagaatgtctttgttgta |
28183857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 15 - 323
Target Start/End: Complemental strand, 27918774 - 27918466
Alignment:
| Q |
15 |
tgttgatgctgaaggcagagatagtttttgacaattccgtatgaaacggtattttacagcttgaaattgaattcccagggcatgactgaggcttggtaga |
114 |
Q |
| |
|
|||||||| ||||| |||||||||| ||||||||||| |||||||||| | |||||||| |||||| ||||||||| || ||| |||||||||||||||| |
|
|
| T |
27918774 |
tgttgatgatgaagccagagatagtgtttgacaattctgtatgaaacgatgttttacagtttgaaaatgaattccctggacatcactgaggcttggtaga |
27918675 |
T |
|
| Q |
115 |
ttttcaaatactacaaattttagatttggaatctccactttgtgatcatcaccttcacttgcagatatttcctctagctcatctgcttctcttatcacta |
214 |
Q |
| |
|
||||||||||||| | ||| ||||||||||||||||||||| ||||||||||||||| ||||| ||||||| || ||||||||||||||||||||||||| |
|
|
| T |
27918674 |
ttttcaaatactagatattctagatttggaatctccactttctgatcatcaccttcatttgcaaatatttcatccagctcatctgcttctcttatcacta |
27918575 |
T |
|
| Q |
215 |
gacactttagctcaggaaactctttacatatggagattggaaagacatatttcaacttgttgcactttattacagcaatttcttttagctttgggaagca |
314 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||| |
|
|
| T |
27918574 |
gacactttagctcaggaaggtctttacatatggagattggaaagacatatttcaacttgttgcactttactacagcaagagatcgtagctttgggaagca |
27918475 |
T |
|
| Q |
315 |
tgtctttgt |
323 |
Q |
| |
|
| ||||||| |
|
|
| T |
27918474 |
tatctttgt |
27918466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 21 - 326
Target Start/End: Complemental strand, 28132346 - 28132041
Alignment:
| Q |
21 |
tgctgaaggcagagatagtttttgacaattccgtatgaaacggtattttacagcttgaaattgaattcccagggcatgactgaggcttggtagattttca |
120 |
Q |
| |
|
|||||||| |||||| ||||||||||||||| |||||||||| | ||||||| ||||||||||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
28132346 |
tgctgaagtcagagagagtttttgacaattctgtatgaaacgatgttttacatcttgaaattgaattccctgggcatgattgaggcttggtagattttca |
28132247 |
T |
|
| Q |
121 |
aatactacaaattttagatttggaatctccactttgtgatcatcaccttcacttgcagatatttcctctagctcatctgcttctcttatcactagacact |
220 |
Q |
| |
|
|||| ||||| ||| ||||||||||||||||||||||||||||||||||||||| || |||||||||||| ||| |||||||||||||| | ||| | | |
|
|
| T |
28132246 |
aatattacaactttcagatttggaatctccactttgtgatcatcaccttcacttacaaatatttcctctaactcgtctgcttctcttatgatcagataat |
28132147 |
T |
|
| Q |
221 |
ttagctcaggaaactctttacatatggagattggaaagacatatttcaacttgttgcactttattacagcaatttcttttagctttgggaagcatgtctt |
320 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||| ||||| |||||||||||||||||| |
|
|
| T |
28132146 |
atagctcaggaagctctttacatacggagattggaaagacatatttcaacttgttgcactttactacaacaaccatttttaactttgggaagcatgtctt |
28132047 |
T |
|
| Q |
321 |
tgttgt |
326 |
Q |
| |
|
|||||| |
|
|
| T |
28132046 |
tgttgt |
28132041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 12 - 326
Target Start/End: Complemental strand, 28148139 - 28147825
Alignment:
| Q |
12 |
tggtgttgatgctgaaggcagagatagtttttgacaattccgtatgaaacggtattttacagcttgaaattgaattcccagggcatgactgaggcttggt |
111 |
Q |
| |
|
||||||||| |||||| |||||||||||||||||||||| |||||||||| | ||||||| ||||||||||||||||| | |||||| |||||||||| |
|
|
| T |
28148139 |
tggtgttgactctgaagccagagatagtttttgacaattcagtatgaaacgatgttttacaacttgaaattgaattccctgagcatgatagaggcttggt |
28148040 |
T |
|
| Q |
112 |
agattttcaaatactacaaattttagatttggaatctccactttgtgatcatcaccttcacttgcagatatttcctctagctcatctgcttctcttatca |
211 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||||| || |||||||||||| |||||||||||||||||| | |
|
|
| T |
28148039 |
agattttcaaatattacaagttttagatttggaatctccactttgtgatcatcaaattcacttacaaatatttcctctaactcatctgcttctcttatga |
28147940 |
T |
|
| Q |
212 |
ctagacactttagctcaggaaactctttacatatggagattggaaagacatatttcaacttgttgcactttattacagcaatttcttttagctttgggaa |
311 |
Q |
| |
|
||| |||||||||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||| ||| ||| | | ||||||||||||| |
|
|
| T |
28147939 |
tcagaacctttagctcaggaagctctttagatatggagattggaaacacatatttcaacttgttgcacttttccacaacaagtattcttagctttgggaa |
28147840 |
T |
|
| Q |
312 |
gcatgtctttgttgt |
326 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
28147839 |
gcatgtctttgttgt |
28147825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 30 - 288
Target Start/End: Complemental strand, 28159590 - 28159332
Alignment:
| Q |
30 |
cagagatagtttttgacaattccgtatgaaacggtattttacagcttgaaattgaattcccagggcatgactgaggcttggtagattttcaaatactaca |
129 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
28159590 |
cagagagagtttttgacaattccgtatgaaacgattttttacagcttgaaattgaattctctgggcatgactgaggattggtagattttcaaatactaca |
28159491 |
T |
|
| Q |
130 |
aattttagatttggaatctccactttgtgatcatcaccttcacttgcagatatttcctctagctcatctgcttctcttatcactagacactttagctcag |
229 |
Q |
| |
|
||| |||||||||||||| |||||| ||||||||||||||| || || ||||||||||||||||||||| ||||||||||| ||| |||||||||| |
|
|
| T |
28159490 |
cattctagatttggaatcttcactttctgatcatcaccttcaattacaaatatttcctctagctcatctgattctcttatcatcagaacatttagctcag |
28159391 |
T |
|
| Q |
230 |
gaaactctttacatatggagattggaaagacatatttcaacttgttgcactttattaca |
288 |
Q |
| |
|
||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
28159390 |
gaagctctttacatatggagattggaaatacatatttcaacttgttgcactttattaca |
28159332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 21 - 327
Target Start/End: Original strand, 28481358 - 28481664
Alignment:
| Q |
21 |
tgctgaaggcagagatagtttttgacaattccgtatgaaacggtattttacagcttgaaattgaattcccagggcatgactgaggcttggtagattttca |
120 |
Q |
| |
|
|||||||| |||||| ||||||||||||||| |||||||||| | ||||||||||||||||||||||||| | |||||| ||||||||||||||||||| |
|
|
| T |
28481358 |
tgctgaagccagagagagtttttgacaattcagtatgaaacgatgttttacagcttgaaattgaattccctgatcatgacagaggcttggtagattttca |
28481457 |
T |
|
| Q |
121 |
aatactacaaattttagatttggaatctccactttgtgatcatcaccttcacttgcagatatttcctctagctcatctgcttctcttatcactagacact |
220 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |||||||||| | ||| |||||||||||||| | ||| | |
|
|
| T |
28481458 |
aatactacaaattttagatttggaatctcgactttgtgatcatcaccttcacttccaaatatttcctcgaactcgtctgcttctcttatgatgagaacat |
28481557 |
T |
|
| Q |
221 |
ttagctcaggaaactctttacatatggagattggaaagacatatttcaacttgttgcactttattacagcaatttcttttagctttgggaagcatgtctt |
320 |
Q |
| |
|
|||||| |||| ||||||| |||||||||||||||| |||||||||||||||||||||||| ||| ||| | | |||||||||||||||||||||| |
|
|
| T |
28481558 |
ttagctttggaagctctttagatatggagattggaaacacatatttcaacttgttgcacttttccacaacaagtagtgttagctttgggaagcatgtctt |
28481657 |
T |
|
| Q |
321 |
tgttgta |
327 |
Q |
| |
|
||||||| |
|
|
| T |
28481658 |
tgttgta |
28481664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 21 - 323
Target Start/End: Complemental strand, 28082139 - 28081837
Alignment:
| Q |
21 |
tgctgaaggcagagatagtttttgacaattccgtatgaaacggtattttacagcttgaaattgaattcccagggcatgactgaggcttggtagattttca |
120 |
Q |
| |
|
|||||||| |||||| ||||||||||||||| |||||||||| ||| ||||||||| |||||||||||| ||||||||| ||||||||| ||||||||| |
|
|
| T |
28082139 |
tgctgaagccagagagagtttttgacaattctgtatgaaacgatatgttacagcttcaaattgaattccttgggcatgacagaggcttggaagattttca |
28082040 |
T |
|
| Q |
121 |
aatactacaaattttagatttggaatctccactttgtgatcatcaccttcacttgcagatatttcctctagctcatctgcttctcttatcactagacact |
220 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||||||||||||||||||| ||| || |||||||||||| |||||||||||||||||| | ||| | | |
|
|
| T |
28082039 |
aatactacaaatcgtagatatggaatctccactttgtgatcatcaccttcgcttacaaatatttcctctaactcatctgcttctcttatgatcagataat |
28081940 |
T |
|
| Q |
221 |
ttagctcaggaaactctttacatatggagattggaaagacatatttcaacttgttgcactttattacagcaatttcttttagctttgggaagcatgtctt |
320 |
Q |
| |
|
|||||||||||| ||||||| ||| |||||||||||||||||||||||||||||| |||||| |||| ||| | ||| |||||| | ||||||||||| |
|
|
| T |
28081939 |
ttagctcaggaagctctttatatacggagattggaaagacatatttcaacttgttacactttgctacaacaagtgttttcagcttttgaaagcatgtctt |
28081840 |
T |
|
| Q |
321 |
tgt |
323 |
Q |
| |
|
||| |
|
|
| T |
28081839 |
tgt |
28081837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 15 - 327
Target Start/End: Complemental strand, 27975754 - 27975442
Alignment:
| Q |
15 |
tgttgatgctgaaggcagagatagtttttgacaattccgtatgaaacggtattttacagcttgaaattgaattcccagggcatgactgaggcttggtaga |
114 |
Q |
| |
|
|||||||||| | | ||| || ||||||||||||||| ||||| | | | |||||||||||||||||||||||| || ||||| ||||||||||||| |
|
|
| T |
27975754 |
tgttgatgctaacgccagggagagtttttgacaattctgtatggcatgatgttttacagcttgaaattgaattccttggtcatgatggaggcttggtaga |
27975655 |
T |
|
| Q |
115 |
ttttcaaatactacaaattttagatttggaatctccactttgtgatcatcaccttcacttgcagatatttcctctagctcatctgcttctcttatcacta |
214 |
Q |
| |
|
|||||||||| ||||| | | ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||| | |
|
|
| T |
27975654 |
ttttcaaatattacaactatcagatttggaatctccactttgtgatcatcaccttcacttacaaatatttcctctagctcagctgcttctcttatcaaga |
27975555 |
T |
|
| Q |
215 |
gacactttagctcaggaaactctttacatatggagattggaaagacatatttcaacttgttgcactttattacagcaatttcttttagctttgggaagca |
314 |
Q |
| |
|
|| || ||||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||| || ||||| ||| | ||||| |||||||||||| |
|
|
| T |
27975554 |
gaacctctagctcaagaagctctttacatatggagattggaaacacatatttcaacttgttgcacctttttacaacaagtgtttttaactttgggaagca |
27975455 |
T |
|
| Q |
315 |
tgtctttgttgta |
327 |
Q |
| |
|
||||||||||||| |
|
|
| T |
27975454 |
tgtctttgttgta |
27975442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 8 - 323
Target Start/End: Complemental strand, 28035837 - 28035522
Alignment:
| Q |
8 |
agtttggtgttgatgctgaaggcagagatagtttttgacaattccgtatgaaacggtattttacagcttgaaattgaattcccagggcatgactgaggct |
107 |
Q |
| |
|
|||||| |||||||| ||||| |||||||||| ||||||||||| | |||||||| | |||||||| |||||| ||||||| | || |||||||||| || |
|
|
| T |
28035837 |
agtttgttgttgatgatgaagccagagatagtgtttgacaattctgcatgaaacgttgttttacagtttgaaaatgaattctctggacatgactgagtct |
28035738 |
T |
|
| Q |
108 |
tggtagattttcaaatactacaaattttagatttggaatctccactttgtgatcatcaccttcacttgcagatatttcctctagctcatctgcttctctt |
207 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| || | || ||||||||||||| |
|
|
| T |
28035737 |
tggtagattttcaaacactacaaattttagatttggaatctccactttctgatcatcaccttcacttgcaaatatttcttccatcttatctgcttctctt |
28035638 |
T |
|
| Q |
208 |
atcactagacactttagctcaggaaactctttacatatggagattggaaagacatatttcaacttgttgcactttattacagcaatttcttttagctttg |
307 |
Q |
| |
|
|||| |||| | || || |||| ||||||||||||||||||||||||||||||||| |||| ||||| | || |||||||| | || |||||||| |
|
|
| T |
28035637 |
atcattagagcttctaacttgggaagctctttacatatggagattggaaagacatattttaactgattgcattgtactacagcaagtgtttgtagctttg |
28035538 |
T |
|
| Q |
308 |
ggaagcatgtctttgt |
323 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
28035537 |
ggaagcatgtctttgt |
28035522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 15 - 327
Target Start/End: Original strand, 17746025 - 17746334
Alignment:
| Q |
15 |
tgttgatgctgaaggcagagatagtttttgacaattccgtatgaaacggtattttacagcttgaaattgaattcccagggcatgactgaggcttggtaga |
114 |
Q |
| |
|
||||| |||||||| |||||| |||||||||||||||||||||||||| | |||||||||||||||||||||||| | || |||| ||||||||||| |
|
|
| T |
17746025 |
tgttgttgctgaagccagagagagtttttgacaattccgtatgaaacgatgttttacagcttgaaattgaattccttgagcttgacaaaggcttggtagg |
17746124 |
T |
|
| Q |
115 |
ttttcaaatactacaaattttagatttggaatctccactttgtgatcatcaccttcacttgcagatatttcctctagctcatctgcttctcttatcacta |
214 |
Q |
| |
|
|| ||||| | |||| ||| || || ||||| | ||||| | |||||||||||||| || |||||||||||||||||| |||||||||||||| || |
|
|
| T |
17746125 |
ttgacaaatgccacaactttcagtttcggaatattgactttct---catcaccttcacttccaaatatttcctctagctcatatgcttctcttatcatta |
17746221 |
T |
|
| Q |
215 |
gacactttagctcaggaaactctttacatatggagattggaaagacatatttcaacttgttgcactttattacagcaatttcttttagctttgggaagca |
314 |
Q |
| |
|
||| || ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| | | |||||||||||||||| |
|
|
| T |
17746222 |
gaccctctagctcaggaagctctttacatatggagattggaaagacatataacaacttgttgcacttttgcacagcaagtgttcttagctttgggaagca |
17746321 |
T |
|
| Q |
315 |
tgtctttgttgta |
327 |
Q |
| |
|
||||||||||||| |
|
|
| T |
17746322 |
tgtctttgttgta |
17746334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 15 - 327
Target Start/End: Original strand, 19047345 - 19047654
Alignment:
| Q |
15 |
tgttgatgctgaaggcagagatagtttttgacaattccgtatgaaacggtattttacagcttgaaattgaattcccagggcatgactgaggcttggtaga |
114 |
Q |
| |
|
||||| |||||||| |||||| |||||||||||||||||||||||||| | |||||||||||||||||||||||| | || |||| ||||||||||| |
|
|
| T |
19047345 |
tgttgttgctgaagccagagagagtttttgacaattccgtatgaaacgatgttttacagcttgaaattgaattccttgagcttgacaaaggcttggtagg |
19047444 |
T |
|
| Q |
115 |
ttttcaaatactacaaattttagatttggaatctccactttgtgatcatcaccttcacttgcagatatttcctctagctcatctgcttctcttatcacta |
214 |
Q |
| |
|
|| ||||| | |||| ||| || || ||||| | ||||| | |||||||||||||| || |||||||||||||||||| |||||||||||||| || |
|
|
| T |
19047445 |
ttgacaaatgccacaactttcagtttcggaatattgactttct---catcaccttcacttccaaatatttcctctagctcatatgcttctcttatcatta |
19047541 |
T |
|
| Q |
215 |
gacactttagctcaggaaactctttacatatggagattggaaagacatatttcaacttgttgcactttattacagcaatttcttttagctttgggaagca |
314 |
Q |
| |
|
||| || ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| | | |||||||||||||||| |
|
|
| T |
19047542 |
gaccctctagctcaggaagctctttacatatggagattggaaagacatataacaacttgttgcacttttgcacagcaagtgttcttagctttgggaagca |
19047641 |
T |
|
| Q |
315 |
tgtctttgttgta |
327 |
Q |
| |
|
||||||||||||| |
|
|
| T |
19047642 |
tgtctttgttgta |
19047654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 15 - 323
Target Start/End: Complemental strand, 11419133 - 11418825
Alignment:
| Q |
15 |
tgttgatgctgaaggcagagatagtttttgacaattccgtatgaaacggtattttacagcttgaaattgaattcccagggcatgactgaggcttggtaga |
114 |
Q |
| |
|
||||| || ||||| |||||| ||||||||||||||| |||||||||| ||||||||||||||| ||||||||| | ||| || | || ||||| ||| |
|
|
| T |
11419133 |
tgttgttgatgaagccagagagagtttttgacaattctgtatgaaacgatattttacagcttgatattgaattctctgggtatcccagaaacttggcaga |
11419034 |
T |
|
| Q |
115 |
ttttcaaatactacaaattttagatttggaatctccactttgtgatcatcaccttcacttgcagatatttcctctagctcatctgcttctcttatcacta |
214 |
Q |
| |
|
||||||||||||| |||||| ||||| |||||||| ||| |||| |||| |||||||| || |||||||||||||||||||||| |||||||||| | |
|
|
| T |
11419033 |
ttttcaaatactaaaaatttaagattcggaatctcgcttttctgatgatcatcttcacttacaaatatttcctctagctcatctgcgtctcttatcatca |
11418934 |
T |
|
| Q |
215 |
gacactttagctcaggaaactctttacatatggagattggaaagacatatttcaacttgttgcactttattacagcaatttcttttagctttgggaagca |
314 |
Q |
| |
|
|| | ||||||||||| ||||||||| | |||||||||||| |||||||||||||||||||||||| |||| ||| | |||||||||||||||||| |
|
|
| T |
11418933 |
gaacatatagctcaggaagctctttacacagggagattggaaaaacatatttcaacttgttgcactttgctacaacaagtgtttttagctttgggaagca |
11418834 |
T |
|
| Q |
315 |
tgtctttgt |
323 |
Q |
| |
|
||||||||| |
|
|
| T |
11418833 |
tgtctttgt |
11418825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 36 - 323
Target Start/End: Original strand, 27460919 - 27461203
Alignment:
| Q |
36 |
tagtttttgacaattccgtatgaaacggtattttacagcttgaaattgaattcccagggcatgactgaggcttggtagattttcaaatactacaaatttt |
135 |
Q |
| |
|
|||||||||||||||| ||| ||| | | |||||||||||| | |||||||||| || |||||| |||||||||||||||| |||||||||||| |||| |
|
|
| T |
27460919 |
tagtttttgacaattctgtaccaaatgatgttttacagcttggagttgaattccctggacatgacagaggcttggtagatttacaaatactacaagtttt |
27461018 |
T |
|
| Q |
136 |
agatttggaatctccactttgtgatcatcaccttcacttgcagatatttcctctagctcatctgcttctcttatcactagacactttagctcaggaaact |
235 |
Q |
| |
|
|||||||||||||||| ||| |||||||| ||||||| || |||||||||||||| |||||||||||||| | |||| || ||||||||||| || |
|
|
| T |
27461019 |
agatttggaatctccagtttctgatcatctttttcacttacaaatatttcctctagc---tctgcttctcttatgattagaacctctagctcaggaagct |
27461115 |
T |
|
| Q |
236 |
ctttacatatggagattggaaagacatatttcaacttgttgcactttattacagcaatttcttttagctttgggaagcatgtctttgt |
323 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |||||||||| |||| || | ||| ||||||||||||||||||||||| |
|
|
| T |
27461116 |
ctttacatatggacattggaaagacatatttcaactgattgcactttactacaataagtgttttaagctttgggaagcatgtctttgt |
27461203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 222 - 359
Target Start/End: Complemental strand, 28147737 - 28147600
Alignment:
| Q |
222 |
tagctcaggaaactctttacatatggagattggaaagacatatttcaacttgttgcactttattacagcaatttcttttagctttgggaagcatgtcttt |
321 |
Q |
| |
|
|||| |||||| |||||| ||||||| |||| |||||||||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||| |
|
|
| T |
28147737 |
tagcgcaggaaggtctttatatatggaaattgaaaagacatatttcaacttgttgcactttattacaacaattctttttagatttgggaagcatgtcttt |
28147638 |
T |
|
| Q |
322 |
gttgtattctccaaatcatcttcaataatatgcctcaa |
359 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
28147637 |
gttgtattctccaaatcatcttcaataatatgcttcaa |
28147600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 222 - 359
Target Start/End: Original strand, 28481751 - 28481888
Alignment:
| Q |
222 |
tagctcaggaaactctttacatatggagattggaaagacatatttcaacttgttgcactttattacagcaatttcttttagctttgggaagcatgtcttt |
321 |
Q |
| |
|
|||| |||||| |||||||||||||| |||| ||||||||||||||||||||||||||||| |||| ||| | | ||||||||||||||||||||||| |
|
|
| T |
28481751 |
tagcgcaggaaggtctttacatatggaaattgaaaagacatatttcaacttgttgcactttactacaccaagtattcttagctttgggaagcatgtcttt |
28481850 |
T |
|
| Q |
322 |
gttgtattctccaaatcatcttcaataatatgcctcaa |
359 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
28481851 |
gttgtattctccaaatcatcttcaatgatatgcttcaa |
28481888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 222 - 359
Target Start/End: Original strand, 28481919 - 28482056
Alignment:
| Q |
222 |
tagctcaggaaactctttacatatggagattggaaagacatatttcaacttgttgcactttattacagcaatttcttttagctttgggaagcatgtcttt |
321 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||| | || |||||||||||||||| ||||| |
|
|
| T |
28481919 |
tagctcaggaaggtctttacatatggagattggaaacacatatttcaacttgttgcactttactactacaagtatttgtagctttgggaagcatatcttt |
28482018 |
T |
|
| Q |
322 |
gttgtattctccaaatcatcttcaataatatgcctcaa |
359 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
28482019 |
gttgtattctccaaatcatcttcaatgatatgcttcaa |
28482056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 73 - 347
Target Start/End: Original strand, 27392146 - 27392417
Alignment:
| Q |
73 |
gcttgaaattgaattcccagggcatgactgaggcttggtagattttcaaatactacaaattttagatttggaatctccactttgtgatcatcaccttcac |
172 |
Q |
| |
|
|||||||| |||||||| ||| || |||||||||||||| || ||||| |||||||||| ||||||||||| | ||||| | ||||| |||| | |
|
|
| T |
27392146 |
gcttgaaaatgaattccttgggtctggctgaggcttggtaggttgacaaatgctacaaatttcagatttggaatattgactttct---catcaacttcgc |
27392242 |
T |
|
| Q |
173 |
ttgcagatatttcctctagctcatctgcttctcttatcactagacactttagctcaggaaactctttacatatggagattggaaagacatatttcaactt |
272 |
Q |
| |
|
| || ||||||||||||||||||||||||||||||| | ||| |||||||||||||| |||||||||||||||||||||||| |||||||||||| | |
|
|
| T |
27392243 |
atacaaatatttcctctagctcatctgcttctcttatgatcagaacctttagctcaggaagctctttacatatggagattggaaacacatatttcaacat |
27392342 |
T |
|
| Q |
273 |
gttgcactttattacagcaatttcttttagctttgggaagcatgtctttgttgtattctccaaatcatcttcaat |
347 |
Q |
| |
|
||||||||| |||| ||| | ||| ||||||||||||| | | || |||||||||||||||||||||| |
|
|
| T |
27392343 |
tttgcacttttctacaacaactgttttgagctttgggaagcgtacaatctttctattctccaaatcatcttcaat |
27392417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 106 - 315
Target Start/End: Complemental strand, 12146335 - 12146126
Alignment:
| Q |
106 |
cttggtagattttcaaatactacaaattttagatttggaatctccactttgtgatcatcaccttcacttgcagatatttcctctagctcatctgcttctc |
205 |
Q |
| |
|
|||||||| || ||||| ||||||||| || |||||||| | ||||| | |||| | |||||| | || |||||||||||||||||| |||||||| |
|
|
| T |
12146335 |
cttggtaggttgacaaatgctacaaattccagttttggaatattgactttctcatcaccttcttcacatacaaatatttcctctagctcatttgcttctc |
12146236 |
T |
|
| Q |
206 |
ttatcactagacactttagctcaggaaactctttacatatggagattggaaagacatatttcaacttgttgcactttattacagcaatttcttttagctt |
305 |
Q |
| |
|
|||| | |||| ||| ||||||||||| |||||||||||||||||||||||| |||||||| ||| | |||||| || |||| ||| | ||||||||| |
|
|
| T |
12146235 |
ttataattagaaactgtagctcaggaagctctttacatatggagattggaaacacatattttaacattttgcacctttttaccacaagtgtttttagctt |
12146136 |
T |
|
| Q |
306 |
tgggaagcat |
315 |
Q |
| |
|
|||||||||| |
|
|
| T |
12146135 |
tgggaagcat |
12146126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 106 - 315
Target Start/End: Complemental strand, 27376518 - 27376309
Alignment:
| Q |
106 |
cttggtagattttcaaatactacaaattttagatttggaatctccactttgtgatcatcaccttcacttgcagatatttcctctagctcatctgcttctc |
205 |
Q |
| |
|
|||||||| || ||||| |||||| |||||||||||| || | ||||| | |||| | |||||| | || ||||||||||||||| ||||| |||| |
|
|
| T |
27376518 |
cttggtaggttgacaaatgctacaagttttagatttggcatattgactttctcatcaccttcttcacatacaaatatttcctctagcttatctgattctt |
27376419 |
T |
|
| Q |
206 |
ttatcactagacactttagctcaggaaactctttacatatggagattggaaagacatatttcaacttgttgcactttattacagcaatttcttttagctt |
305 |
Q |
| |
|
|||||||||||| || ||||||||||| ||||| ||||||||||||||||||||||| ||||||| | |||||| || |||| ||| | || |||||| |
|
|
| T |
27376418 |
ttatcactagactctctagctcaggaagctcttcacatatggagattggaaagacatttttcaacattttgcacattcttaccacaagtgtttgtagctt |
27376319 |
T |
|
| Q |
306 |
tgggaagcat |
315 |
Q |
| |
|
|||||||||| |
|
|
| T |
27376318 |
tgggaagcat |
27376309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 179 - 274
Target Start/End: Original strand, 26142311 - 26142406
Alignment:
| Q |
179 |
atatttcctctagctcatctgcttctcttatcactagacactttagctcaggaaactctttacatatggagattggaaagacatatttcaacttgt |
274 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| | | |||||||| ||||||||||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
26142311 |
atatttcctctagctcatttgcttctcttatcaacacagcctttagcttaggaaactctttacaaatggagattggaaagacatacttcaacttgt |
26142406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 179 - 274
Target Start/End: Original strand, 26180616 - 26180711
Alignment:
| Q |
179 |
atatttcctctagctcatctgcttctcttatcactagacactttagctcaggaaactctttacatatggagattggaaagacatatttcaacttgt |
274 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| | | |||||||||||||||||||||||| ||||||| |||||| ||||| |||||||||| |
|
|
| T |
26180616 |
atatttcctctagctcatttgcttctcttatcaacataacctttagctcaggaaactctttacaaatggagactggaaacacatacttcaacttgt |
26180711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 162 - 315
Target Start/End: Original strand, 18026466 - 18026619
Alignment:
| Q |
162 |
atcaccttcacttgcagatatttcctctagctcatctgcttctcttatcactagacactttagctcaggaaactctttacatatggagattggaaagaca |
261 |
Q |
| |
|
|||| |||||| | || ||||||||||||||| ||||||||| ||| | || | |||||||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
18026466 |
atcaacttcacatacaaatatttcctctagcttctctgcttctactatgattataacctttagctcaggaagctctttatatatggagattggaaagaca |
18026565 |
T |
|
| Q |
262 |
tatttcaacttgttgcactttattacagcaatttcttttagctttgggaagcat |
315 |
Q |
| |
|
| ||||||||| | ||| ||| |||| ||| | ||||||||||||||||||| |
|
|
| T |
18026566 |
tttttcaacttatgacacgttactacaacaagtgtttttagctttgggaagcat |
18026619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 160 - 280
Target Start/End: Complemental strand, 27347671 - 27347551
Alignment:
| Q |
160 |
tcatcaccttcacttgcagatatttcctctagctcatctgcttctcttatcactagacactttagctcaggaaactctttacatatggagattggaaaga |
259 |
Q |
| |
|
|||||||||| || | || |||||||||| | || |||| ||||||||| | |||| || ||||||||||| |||||||||||||||||||||||| | |
|
|
| T |
27347671 |
tcatcacctttacatacaaatatttcctccaattcttctgattctcttatgattagagcctctagctcaggaagctctttacatatggagattggaaaca |
27347572 |
T |
|
| Q |
260 |
catatttcaacttgttgcact |
280 |
Q |
| |
|
||||||||||| ||||||||| |
|
|
| T |
27347571 |
catatttcaacatgttgcact |
27347551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 179 - 274
Target Start/End: Original strand, 26114999 - 26115094
Alignment:
| Q |
179 |
atatttcctctagctcatctgcttctcttatcactagacactttagctcaggaaactctttacatatggagattggaaagacatatttcaacttgt |
274 |
Q |
| |
|
||||||| |||| ||||| |||||||||||| | | | |||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
26114999 |
atatttcttctaactcatttgcttctcttattatcataacctttagctcaggaagctctttacaaatggagactggaaagacatatttcaacttgt |
26115094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #29
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 179 - 274
Target Start/End: Original strand, 26131579 - 26131674
Alignment:
| Q |
179 |
atatttcctctagctcatctgcttctcttatcactagacactttagctcaggaaactctttacatatggagattggaaagacatatttcaacttgt |
274 |
Q |
| |
|
||||| |||||||||||| |||||| ||||||| | | |||||||| ||||||||||||||| ||||||| |||||||||||| |||||||||| |
|
|
| T |
26131579 |
atattccctctagctcatttgcttcacttatcatcataacctttagcttaggaaactctttacaaatggagactggaaagacatacttcaacttgt |
26131674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #30
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 179 - 274
Target Start/End: Original strand, 26210107 - 26210202
Alignment:
| Q |
179 |
atatttcctctagctcatctgcttctcttatcactagacactttagctcaggaaactctttacatatggagattggaaagacatatttcaacttgt |
274 |
Q |
| |
|
|||||||||||| ||||| |||||||||||| | | | ||||||||||||||||||||||| ||||||| |||||| |||||||||||||||| |
|
|
| T |
26210107 |
atatttcctctaactcatttgcttctcttattatcataacatttagctcaggaaactctttacaaatggagactggaaacacatatttcaacttgt |
26210202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #31
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 179 - 274
Target Start/End: Original strand, 26237351 - 26237446
Alignment:
| Q |
179 |
atatttcctctagctcatctgcttctcttatcactagacactttagctcaggaaactctttacatatggagattggaaagacatatttcaacttgt |
274 |
Q |
| |
|
|||||||||||| ||||| |||||||||||| | | | |||||||||||||||||||||||| ||||||| |||||| | |||||||||||||| |
|
|
| T |
26237351 |
atatttcctctaactcatttgcttctcttatgaacataacctttagctcaggaaactctttacaaatggagactggaaacatatatttcaacttgt |
26237446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #32
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 283
Target Start/End: Complemental strand, 26627896 - 26627626
Alignment:
| Q |
15 |
tgttgatgctgaaggcagagatagtttttgacaattccgtatgaaacggtattttacagcttgaaattgaattcccagggcatgactgaggcttggtaga |
114 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||| ||| ||||| | || |||| | |||||||||||||| | | || | ||||||| |||| |
|
|
| T |
26627896 |
tgttgatgctgaagttagagagagtttttgacaattctgtacaaaacgattttctacatcctgaaattgaattccttgtgtctggcagaggctt-gtagg |
26627798 |
T |
|
| Q |
115 |
ttttcaaatactacaaattttagatttggaatctccactttgtg---atcatcaccttcacttgcagatatttcctctagctcatctgcttctcttatca |
211 |
Q |
| |
|
| ||||| |||| | ||||||||||||||||| ||||| || ||||||| ||||| || ||||||||||||| ||| | ||||||||||||| |
|
|
| T |
26627797 |
tcgacaaatgctaccacatttagatttggaatctcgactttctgatcatcatcatcttcatttttgaatatttcctctagttcaccagcttctcttatca |
26627698 |
T |
|
| Q |
212 |
ctagacactttagctcaggaaactctttacatatggagattggaaagacatatttcaacttgttgcacttta |
283 |
Q |
| |
|
||| || ||||||||||| ||||| | | | |||| ||||||| ||||||||||||| |||| |||| |
|
|
| T |
26627697 |
tcagaacctctagctcaggaagctcttgagaaacggaggttggaaatcaatatttcaacttggtgcagttta |
26627626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #33
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 218 - 322
Target Start/End: Original strand, 27457028 - 27457132
Alignment:
| Q |
218 |
actttagctcaggaaactctttacatatggagattggaaagacatatttcaacttgttgcactttattacagcaatttcttttagctttgggaagcatgt |
317 |
Q |
| |
|
||||||||||||||| ||||||| |||||||| |||||||| | |||| || |||||| | || | ||||||| | ||||||||||| ||||||||| |
|
|
| T |
27457028 |
actttagctcaggaagctctttagttatggagactggaaagagacattttaatttgttggagttcacaacagcaagtgtttttagctttgtgaagcatgt |
27457127 |
T |
|
| Q |
318 |
ctttg |
322 |
Q |
| |
|
||||| |
|
|
| T |
27457128 |
ctttg |
27457132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #34
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 326 - 359
Target Start/End: Complemental strand, 28147801 - 28147768
Alignment:
| Q |
326 |
tattctccaaatcatcttcaataatatgcctcaa |
359 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
28147801 |
tattctccaaatcatcttcaataatatgcctcaa |
28147768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 326 - 359
Target Start/End: Original strand, 18026654 - 18026687
Alignment:
| Q |
326 |
tattctccaaatcatcttcaataatatgcctcaa |
359 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |
|
|
| T |
18026654 |
tattctccaaatcatcttcaataatatgcttcaa |
18026687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 326 - 359
Target Start/End: Original strand, 28481687 - 28481720
Alignment:
| Q |
326 |
tattctccaaatcatcttcaataatatgcctcaa |
359 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| |
|
|
| T |
28481687 |
tattctccatatcatcttcaataatatgcctcaa |
28481720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 326 - 354
Target Start/End: Complemental strand, 28081813 - 28081785
Alignment:
| Q |
326 |
tattctccaaatcatcttcaataatatgc |
354 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
28081813 |
tattctccaaatcatcttcaataatatgc |
28081785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 118; Significance: 4e-60; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 107 - 288
Target Start/End: Complemental strand, 8020071 - 8019890
Alignment:
| Q |
107 |
ttggtagattttcaaatactacaaattttagatttggaatctccactttgtgatcatcaccttcacttgcagatatttcctctagctcatctgcttctct |
206 |
Q |
| |
|
|||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| ||||||||| |
|
|
| T |
8020071 |
ttggtagattttcaaatattacaactttcagatttggaatctccactttgtgatcatcaccttcacttacaaatatttcctctagctcatatgcttctct |
8019972 |
T |
|
| Q |
207 |
tatcactagacactttagctcaggaaactctttacatatggagattggaaagacatatttcaacttgttgcactttattaca |
288 |
Q |
| |
|
||| | ||| | ||||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||| |||| |
|
|
| T |
8019971 |
tatgatcagataatttagctcaggaagctctttacatatggagattggaaagacatggttcaacttgatgcactttactaca |
8019890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 102 - 282
Target Start/End: Complemental strand, 22391444 - 22391264
Alignment:
| Q |
102 |
gaggcttggtagattttcaaatactacaaattttagatttggaatctccactttgtgatcatcaccttcacttgcagatatttcctctagctcatctgct |
201 |
Q |
| |
|
|||||||||||| || ||||| ||||| |||||||||||| || | ||||| |||||| | |||||| | || ||||||||||||||| || |||| |
|
|
| T |
22391444 |
gaggcttggtaggttgacaaatgatacaacttttagatttggcatattgactttctgatcaccttcttcacatacaaatatttcctctagcttatatgct |
22391345 |
T |
|
| Q |
202 |
tctcttatcactagacactttagctcaggaaactctttacatatggagattggaaagacatatttcaacttgttgcacttt |
282 |
Q |
| |
|
|| |||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||| ||| | ||||||||| |
|
|
| T |
22391344 |
tcacttatcactagagcctctagctcaggaagctctttacatatggagattggaaagacatattttaacattttgcacttt |
22391264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 326 - 360
Target Start/End: Complemental strand, 22391196 - 22391162
Alignment:
| Q |
326 |
tattctccaaatcatcttcaataatatgcctcaat |
360 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |
|
|
| T |
22391196 |
tattctccaaatcatcttcaataatatgcttcaat |
22391162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 114; Significance: 1e-57; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 82 - 327
Target Start/End: Original strand, 8693252 - 8693497
Alignment:
| Q |
82 |
tgaattcccagggcatgactgaggcttggtagattttcaaatactacaaattttagatttggaatctccactttgtgatcatcaccttcacttgcagata |
181 |
Q |
| |
|
|||||||| ||||||||| ||||||||| |||||||||||||||||| ||| ||||||||||||||| ||||| | |||| ||||||||||||| ||| |
|
|
| T |
8693252 |
tgaattccttgggcatgacagaggcttggaagattttcaaatactacatattctagatttggaatctcgactttctcatcacgaccttcacttgcaaata |
8693351 |
T |
|
| Q |
182 |
tttcctctagctcatctgcttctcttatcactagacactttagctcaggaaactctttacatatggagattggaaagacatatttcaacttgttgcactt |
281 |
Q |
| |
|
|||| || |||||||||||||||||||| | ||| ||||||||||||| ||| ||||||||||||| ||||||||||||||||||| ||| |||||| |
|
|
| T |
8693352 |
tttcatccagctcatctgcttctcttatgatcagaacatttagctcaggaagctcgttacatatggagactggaaagacatatttcaacatgtcgcactt |
8693451 |
T |
|
| Q |
282 |
tattacagcaatttcttttagctttgggaagcatgtctttgttgta |
327 |
Q |
| |
|
||| || ||| || |||||||||||||||||||||||||||| |
|
|
| T |
8693452 |
tatcactacaagccgttctagctttgggaagcatgtctttgttgta |
8693497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 326 - 359
Target Start/End: Original strand, 8693523 - 8693556
Alignment:
| Q |
326 |
tattctccaaatcatcttcaataatatgcctcaa |
359 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |
|
|
| T |
8693523 |
tattctccaaatcatcttcaataatatgcttcaa |
8693556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0043 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: scaffold0043
Description:
Target: scaffold0043; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 120 - 279
Target Start/End: Original strand, 54681 - 54840
Alignment:
| Q |
120 |
aaatactacaaattttagatttggaatctccactttgtgatcatcaccttcacttgcagatatttcctctagctcatctgcttctcttatcactagacac |
219 |
Q |
| |
|
|||| |||||| ||| |||||||||| | ||||| |||||| | |||||| | || |||||||||||||||||| |||||||||||| | |||| |
|
|
| T |
54681 |
aaatgctacaactttcagatttggaagattgactttctgatcaccttcttcacatacaaatatttcctctagctcatgtgcttctcttatgattagagca |
54780 |
T |
|
| Q |
220 |
tttagctcaggaaactctttacatatggagattggaaagacatatttcaacttgttgcac |
279 |
Q |
| |
|
| ||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
54781 |
tctagctcaggaagctctttacatatggagattggaaagacattttccaacttgttgcac |
54840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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