View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8335_high_3 (Length: 250)
Name: NF8335_high_3
Description: NF8335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8335_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 9 - 234
Target Start/End: Original strand, 38371491 - 38371716
Alignment:
| Q |
9 |
gcagagactaatttttcattgataattttcatcctccaaatagttaaattcaggagtgttttctactctaaatgtnnnnnnngaacaaacaagagaatgt |
108 |
Q |
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| T |
38371491 |
gcagagactaatttttcattgaaaattttcatcctccaaatagttaaattcaggagtgttttctactctaaatgtaaaaaaagaacaaacaagagaatgt |
38371590 |
T |
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| Q |
109 |
taaaaggatatagaaagtacctccaacagcagatatatcaacactacccagaagttgctgtttccattttctcaaactttcatcatcctttgaaacaaaa |
208 |
Q |
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| T |
38371591 |
taaaaggatatagaaagtacctccaacagcagatatatcaacactacccagaagttgctctttccattttctcaaactttcatcatcctttgaaacaaaa |
38371690 |
T |
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| Q |
209 |
aagaaagaagggtttaataaaaaaga |
234 |
Q |
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|||||||||||| ||||||||||||| |
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| T |
38371691 |
aagaaagaagggattaataaaaaaga |
38371716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 123 - 199
Target Start/End: Complemental strand, 34879648 - 34879572
Alignment:
| Q |
123 |
aagtacctccaacagcagatatatcaacactacccagaagttgctgtttccattttctcaaactttcatcatccttt |
199 |
Q |
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||||||||||||||||||| | ||||||| | || ||||| || | ||||||||| ||||| ||||||||||||||| |
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| T |
34879648 |
aagtacctccaacagcagacacatcaacatttcctagaagctgttctttccatttcctcaagctttcatcatccttt |
34879572 |
T |
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