View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8335_low_1 (Length: 846)

Name: NF8335_low_1
Description: NF8335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8335_low_1
NF8335_low_1
[»] chr5 (3 HSPs)
chr5 (469-827)||(33049621-33049978)
chr5 (37-343)||(33049975-33050290)
chr5 (273-618)||(9504236-9504581)
[»] chr1 (2 HSPs)
chr1 (275-815)||(28452125-28452669)
chr1 (39-79)||(28451893-28451933)
[»] chr2 (4 HSPs)
chr2 (273-540)||(45503996-45504263)
chr2 (273-540)||(45496254-45496521)
chr2 (273-540)||(21793691-21793958)
chr2 (273-540)||(5984098-5984365)
[»] chr4 (2 HSPs)
chr4 (273-543)||(16847069-16847339)
chr4 (680-804)||(11355747-11355871)
[»] scaffold0014 (1 HSPs)
scaffold0014 (350-477)||(61808-61934)
[»] chr6 (2 HSPs)
chr6 (273-618)||(7500570-7500915)
chr6 (768-813)||(7501065-7501110)


Alignment Details
Target: chr5 (Bit Score: 339; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 469 - 827
Target Start/End: Complemental strand, 33049978 - 33049621
Alignment:
469 cacatattcaccttcctccatattcagcatctcgtattgttttcttaatgcttgaagcctcactttcttcaatttttcatatccataatacaatctctca 568  Q
    |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
33049978 cacatattcaccatcctccatattca-catctcgtattgttttcttaatgcttgaagcctcactttcttcaattttttatatccataatacaatctctca 33049880  T
569 agtgtatctcaagtttctttcgcattttcacaacgcataatcttctcaaaaatatcactattcacacactagtgaatgagaaacattgcatttccatgtt 668  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
33049879 agtgtatctcaagtttctttcgcattttcacaacgcataatcttctcaaaaatatcactattcacacactagtgaatgagaaacattgcatttccatgtt 33049780  T
669 tcttcttcgtatctttgtttgcagtttgttgaacctcagttgtgtttcttgcaagtgttggtataatatcgttcacaacatcaagaacatattggtatat 768  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
33049779 tcttcttcgtatctttgtttgcagtttgttgaacctcagttgcgtttcttgcaagtgttggtataatatcgttcacaacatcaagaacatattggtatat 33049680  T
769 gaagattaccttcatcttcacgatccattcatcatagctcttgccattgaacactgata 827  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
33049679 gaagattaccttcatcttcacgatccattcatcatagctcttgccattgaacactgata 33049621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 37 - 343
Target Start/End: Complemental strand, 33050290 - 33049975
Alignment:
37 ccttggaactttcttggacttgcattcagatacataatgcccccattttttaagattatatcattgaatctcattctttctcgaagctttctttattttt 136  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||      
33050290 ccttggaactttcttggacttgaattcagatacataatgcccccattttttaagattatatcattgaatctccttctttctcgaagctttctttattt-- 33050193  T
137 acttgaaccttcatcattcttggaagcattatcattccaataattctttcctttcttgtatttccttttatttgtatattgagcttgcaaagcttgatct 236  Q
         |||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
33050192 -----aaccttaatcattcttggaagctttatcattccaataattctttcctttcttgcatttccttttatttgtatattgagcttgcaaagcttgatct 33050098  T
237 aatgcaaaacctttggatttttctttgttcctatc----------------agtgcttcaaggcttgcttgaagttcttcaatcttcatcacatccaaat 320  Q
    |||||| ||||||||||||||||||||||||||||                 ||||||||||||||||||||||||||||||||||||||||||||||||    
33050097 aatgcagaacctttggatttttctttgttcctatcggttaacctcaattcatgtgcttcaaggcttgcttgaagttcttcaatcttcatcacatccaaat 33049998  T
321 ctttggattcttctaagaccaca 343  Q
    |||||||||||||||||||||||    
33049997 ctttggattcttctaagaccaca 33049975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 273 - 618
Target Start/End: Complemental strand, 9504581 - 9504236
Alignment:
273 gtgcttcaaggcttgcttgaagttcttcaatcttcatcacatccaaatctttggattcttctaagaccacaacaatatgatcaaatcttggtgtcaaaat 372  Q
    |||||||||| ||| | || ||||| || ||||||||   ||| || ||||| ||||| |||| | |||| ||||| ||||||||||||| ||| ||  |    
9504581 gtgcttcaagactttcctgcagttcctctatcttcatagaatctaagtctttagattcctctagggccactacaatgtgatcaaatcttgatgttaaggt 9504482  T
373 tctgagaaccttttctaacttcatcaattcagtgattgtatcattatttcttatcatctgatttgctagattcaccagtttatcaaagtattgactcaca 472  Q
    | ||||||||||||| | ||||||||  |||||||  || |||  ||| ||| ||||||||||||  ||||| | ||  ||||||||||||||||| |||    
9504481 tttgagaaccttttccaccttcatcacatcagtgacagtttcaccattccttgtcatctgatttgtaagattgatcaccttatcaaagtattgactaaca 9504382  T
473 tattcaccttcctccatattcagcatctcgtattgttttcttaatgcttgaagcctcactttcttcaatttttcatatccataatacaatctctcaagtg 572  Q
     ||||  |||| |||||  ||| ||  || || ||| |||| || | |||||| ||||| |||||||| ||  |||  |||||||||||| |||| | ||    
9504381 gattcttcttcttccattgtcaacacttcatactgtcttctcaaaggttgaagtctcaccttcttcaacttaccatcaccataatacaatttctctaatg 9504282  T
573 tatctcaagtttctttcgcattttcacaacgcataatcttctcaaa 618  Q
    |||| || || || ||| |  ||||| || |||| |||||||||||    
9504281 tatcccatgtctccttcacgctttcataatgcatgatcttctcaaa 9504236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 124; Significance: 2e-63; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 275 - 815
Target Start/End: Original strand, 28452125 - 28452669
Alignment:
275 gcttcaaggcttgcttgaagttcttcaatcttcatcacatccaaatctttggattcttctaagaccacaacaatatgatcaaatcttggtgtcaaaattc 374  Q
    |||||||| ||||| || | |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||  |||    
28452125 gcttcaagacttgcctgcaattcttcaatcttgatcacatccaaatctttggattcttctaagactacaacaatatgatcaaaccttggtgtcaaggttc 28452224  T
375 tgagaaccttttctaa----cttcatcaattcagtgattgtatcattatttcttatcatctgatttgctagattcaccagtttatcaaagtattgactca 470  Q
    |||  ||||| ||||     ||||||||| |||   ||  | ||   ||| ||| | || |||||||  ||||| | ||| |||| ||| || | ||||     
28452225 tgattaccttctctatatatcttcatcaaatcaacaatgatgtctcaattcctttttatttgatttgtaagatttatcagattattaaaatacttactcg 28452324  T
471 catattcaccttcctccatattcagcatctcgtattgttttcttaatgcttgaagcctcactttcttcaatttttcatatccataatacaatctctcaag 570  Q
    |  ||||||||||  ||||   || ||  |  |||||| | |||||||||||||| | ||| |||||||| ||| ||| |||| ||||||| |||| ||     
28452325 ctgattcaccttctgccatggacaacaatttttattgtctccttaatgcttgaagtcccaccttcttcaactttccatctccagaatacaacctcttaat 28452424  T
571 tgtatctcaagtttctttcgcattttcacaacgcataatcttctcaaaaatatcactattcacacactagtgaatgagaaacattgcatttccatgtttc 670  Q
     |||||||||||||| ||||||||||||||  |||| |||||||| ||||| |||  ||| ||||  |||||||||||||||||||  || |||| |||     
28452425 agtatctcaagtttccttcgcattttcacagtgcatgatcttctccaaaatctcatcattaacaccatagtgaatgagaaacattgatttcccatctttt 28452524  T
671 ttcttcgtatctttgtttgcagtttgttgaacctcagttgtgtttcttgcaagtgttggtataatatcgttcacaacatcaagaacatattggtatatga 770  Q
    ||||||| |||||| | | || ||||||||||||| |||||||||||||||||  |||||| |  ||| ||| || |||||||||||| ||| ||   ||    
28452525 ttcttcgcatctttatgtccaatttgttgaacctctgttgtgtttcttgcaagcattggtagaccatccttcgcagcatcaagaacatcttgataccgga 28452624  T
771 agattaccttcatcttcacgatccattcatcatagctcttgccat 815  Q
    | ||||||||||||||||||||||||| ||||||  |||||||||    
28452625 atattaccttcatcttcacgatccattgatcataaatcttgccat 28452669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 79
Target Start/End: Original strand, 28451893 - 28451933
Alignment:
39 ttggaactttcttggacttgcattcagatacataatgcccc 79  Q
    ||||||||||||| ||||||||||||||| |||||||||||    
28451893 ttggaactttcttagacttgcattcagatgcataatgcccc 28451933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 2e-27; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 273 - 540
Target Start/End: Original strand, 45503996 - 45504263
Alignment:
273 gtgcttcaaggcttgcttgaagttcttcaatcttcatcacatccaaatctttggattcttctaagaccacaacaatatgatcaaatcttggtgtcaaaat 372  Q
    |||||||||| ||||| || ||||| || ||||||||   ||| || ||||| ||||| |||| | |||| ||||| ||||||||||||| ||| ||  |    
45503996 gtgcttcaagacttgcctgcagttcctctatcttcatagaatctaagtctttagattcctctagggccactacaatgtgatcaaatcttgatgttaaggt 45504095  T
373 tctgagaaccttttctaacttcatcaattcagtgattgtatcattatttcttatcatctgatttgctagattcaccagtttatcaaagtattgactcaca 472  Q
    ||||||||||||||| | ||||||||  |||||||  || |||  ||| |||||||||||||||| |||||| | ||  ||||||||||||||||| |||    
45504096 tctgagaaccttttccaccttcatcacatcagtgacagtttcaccattccttatcatctgatttgttagattgatcaccttatcaaagtattgactaaca 45504195  T
473 tattcaccttcctccatattcagcatctcgtattgttttcttaatgcttgaagcctcactttcttcaa 540  Q
    |||||  |||| |||||  ||| ||  || || ||| |||| || |||||||| ||||| ||||||||    
45504196 tattcttcttcttccattgtcaacacttcatactgtcttctcaaagcttgaagtctcaccttcttcaa 45504263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 273 - 540
Target Start/End: Original strand, 45496254 - 45496521
Alignment:
273 gtgcttcaaggcttgcttgaagttcttcaatcttcatcacatccaaatctttggattcttctaagaccacaacaatatgatcaaatcttggtgtcaaaat 372  Q
    |||||||||| ||||| || || || || ||||||||   ||| || ||||| ||||| |||| | |||| ||||| ||||||||||||| ||| ||  |    
45496254 gtgcttcaagacttgcctgcagctcctctatcttcatagaatctaagtctttagattcctctagggccactacaatgtgatcaaatcttgatgttaaggt 45496353  T
373 tctgagaaccttttctaacttcatcaattcagtgattgtatcattatttcttatcatctgatttgctagattcaccagtttatcaaagtattgactcaca 472  Q
    ||||||||||||||| | ||||||||  |||||||  || |||  ||| |||||||||||||||| |||||| | ||  ||||||||||||||||| |||    
45496354 tctgagaaccttttccaccttcatcacatcagtgacagtttcaccattccttatcatctgatttgttagattgatcaccttatcaaagtattgactaaca 45496453  T
473 tattcaccttcctccatattcagcatctcgtattgttttcttaatgcttgaagcctcactttcttcaa 540  Q
    |||||  |||| |||||  ||| ||  || || ||| |||| || |||||||| ||||| ||||||||    
45496454 tattcttcttcttccattgtcaacacttcatactgtcttctcaaagcttgaagtctcaccttcttcaa 45496521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 273 - 540
Target Start/End: Original strand, 21793691 - 21793958
Alignment:
273 gtgcttcaaggcttgcttgaagttcttcaatcttcatcacatccaaatctttggattcttctaagaccacaacaatatgatcaaatcttggtgtcaaaat 372  Q
    |||||||||| ||||| || ||||| || ||||||||   ||| || ||||| ||||| |||| | |||| ||||| ||||||||||||| ||| ||  |    
21793691 gtgcttcaagacttgcctgcagttcctctatcttcatagaatctaagtctttagattcctctagggccactacaatgtgatcaaatcttgatgttaaggt 21793790  T
373 tctgagaaccttttctaacttcatcaattcagtgattgtatcattatttcttatcatctgatttgctagattcaccagtttatcaaagtattgactcaca 472  Q
    ||||||||||||||| | ||||||||  |||||||  || |||  ||| ||| ||||||||||||  ||||| | ||  ||||||||||||||||| |||    
21793791 tctgagaaccttttccaccttcatcacatcagtgacagtttcaccattccttgtcatctgatttgtaagattgatcaccttatcaaagtattgactaaca 21793890  T
473 tattcaccttcctccatattcagcatctcgtattgttttcttaatgcttgaagcctcactttcttcaa 540  Q
     ||||  |||| |||||  ||| ||  || || ||| |||| || |||||||| ||||| ||||||||    
21793891 aattcttcttcttccattgtcaacacttcatactgtcttctcaaagcttgaagtctcaccttcttcaa 21793958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 273 - 540
Target Start/End: Complemental strand, 5984365 - 5984098
Alignment:
273 gtgcttcaaggcttgcttgaagttcttcaatcttcatcacatccaaatctttggattcttctaagaccacaacaatatgatcaaatcttggtgtcaaaat 372  Q
    |||||||||| ||||| || ||||| || ||||||||   ||| || ||||| ||||| |||| | |||| ||||| ||||||||||||| ||| ||  |    
5984365 gtgcttcaagacttgcatgtagttcctctatcttcatagaatctaagtctttagattcctctagggccactacaatgtgatcaaatcttgatgttaaggt 5984266  T
373 tctgagaaccttttctaacttcatcaattcagtgattgtatcattatttcttatcatctgatttgctagattcaccagtttatcaaagtattgactcaca 472  Q
    | ||||||| ||||| | ||||||||  |||||||  || ||| |||| ||| ||||||||||||  ||||| | ||  ||||||||||||||||| |||    
5984265 tatgagaactttttccaccttcatcacatcagtgacagtttcactattccttgtcatctgatttgtaagattgagcaccttatcaaagtattgactaaca 5984166  T
473 tattcaccttcctccatattcagcatctcgtattgttttcttaatgcttgaagcctcactttcttcaa 540  Q
     ||||  |||| |||||  ||| ||  || || ||| |||| || |||||||| ||||| ||||||||    
5984165 gattcttcttcttccattgtcaacacttcatactgtcttctcaaagcttgaagtctcaccttcttcaa 5984098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 9e-20; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 273 - 543
Target Start/End: Original strand, 16847069 - 16847339
Alignment:
273 gtgcttcaaggcttgcttgaagttcttcaatcttcatcacatccaaatctttggattcttctaagaccacaacaatatgatcaaatcttggtgtcaaaat 372  Q
    |||||||||| |||||||| || || || ||||||||   ||| |||||||| ||||| |||| | |||| ||||| ||||||||| ||| ||| ||  |    
16847069 gtgcttcaagacttgcttgcagctcctctatcttcatagaatctaaatctttagattcctctagggccactacaatgtgatcaaattttgatgttaaggt 16847168  T
373 tctgagaaccttttctaacttcatcaattcagtgattgtatcattatttcttatcatctgatttgctagattcaccagtttatcaaagtattgactcaca 472  Q
    ||||||||||||||| | ||||||||  |||||||  || |||  ||| ||| ||||||||||||  ||||| | ||  ||||||||||||||||| |||    
16847169 tctgagaaccttttccaccttcatcacatcagtgacagtttcaccattccttgtcatctgatttgtaagattgatcaccttatcaaagtattgactaaca 16847268  T
473 tattcaccttcctccatattcagcatctcgtattgttttcttaatgcttgaagcctcactttcttcaattt 543  Q
     ||||  |||| |||||  ||| ||  || || ||| |||| || ||||| || ||||| |||||||||||    
16847269 aattcttcttcttccattgtcaacacttcataatgtcttctcaaagcttgcagtctcaccttcttcaattt 16847339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 680 - 804
Target Start/End: Original strand, 11355747 - 11355871
Alignment:
680 tctttgtttgcagtttgttgaacctcagttgtgtttcttgcaagtgttggtataatatcgttcacaacatcaagaacatattggtatatgaagattacct 779  Q
    ||||||||||||| |||||  || ||||||| ||||||||| | || |||||    ||| || ||||| |||||||||| ||||||| ||||||| ||||    
11355747 tctttgtttgcagcttgtttcacatcagttgcgtttcttgccaatgctggtaccccatcattaacaacttcaagaacatcttggtatctgaagatcacct 11355846  T
780 tcatcttcacgatccattcatcata 804  Q
     ||||||||||||||||| ||||||    
11355847 ccatcttcacgatccattgatcata 11355871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 350 - 477
Target Start/End: Complemental strand, 61934 - 61808
Alignment:
350 tgatcaaatcttggtgtcaaaattctgagaaccttttctaacttcatcaattcagtgattgtatcattatttcttatcatctgatttgctagattcacca 449  Q
    ||||||||||||| |||||  ||||||||||||||||| | ||||||||  |||||||| || |||  ||| ||| ||||||||||||  ||||| | ||    
61934 tgatcaaatcttgatgtcacgattctgagaaccttttccaccttcatcacatcagtgatagtttcaccattccttgtcatctgatttgtaagattga-ca 61836  T
450 gtttatcaaagtattgactcacatattc 477  Q
      ||||||||||||||||| ||||||||    
61835 ccttatcaaagtattgactaacatattc 61808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 273 - 618
Target Start/End: Original strand, 7500570 - 7500915
Alignment:
273 gtgcttcaaggcttgcttgaagttcttcaatcttcatcacatccaaatctttggattcttctaagaccacaacaatatgatcaaatcttggtgtcaaaat 372  Q
    |||||||||| |||||||| ||||| || |||||| |   ||| || ||||| |||||  ||| | |||| ||||| ||||||||||||| ||| ||  |    
7500570 gtgcttcaagacttgcttgcagttcctctatcttcgtagaatctaagtctttagattcccctagggccactacaatgtgatcaaatcttgatgttaaggt 7500669  T
373 tctgagaaccttttctaacttcatcaattcagtgattgtatcattatttcttatcatctgatttgctagattcaccagtttatcaaagtattgactcaca 472  Q
    ||||||||||||||| | ||||||||  ||||||    | |||  ||| ||| ||||||||||||  ||||| | ||  ||||||||||||||||| |||    
7500670 tctgagaaccttttccaccttcatcacatcagtggcaatttcaccattccttgtcatctgatttgtaagattgatcaccttatcaaagtattgactaaca 7500769  T
473 tattcaccttcctccatattcagcatctcgtattgttttcttaatgcttgaagcctcactttcttcaatttttcatatccataatacaatctctcaagtg 572  Q
     ||||  |||  |||||  ||| ||  || || ||| |||| || |||||||| ||||| |||||||| ||  |||  ||| |||||| | |||| | ||    
7500770 aattcttcttattccattgtcaacacttcatactgtcttctcaaagcttgaagtctcaccttcttcaacttaccatcaccagaatacagtttctctaatg 7500869  T
573 tatctcaagtttctttcgcattttcacaacgcataatcttctcaaa 618  Q
     ||| || || || |||||| ||||| || |||| |||||||||||    
7500870 catcccatgtctccttcgcactttcataatgcatgatcttctcaaa 7500915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 768 - 813
Target Start/End: Original strand, 7501065 - 7501110
Alignment:
768 tgaagattaccttcatcttcacgatccattcatcatagctcttgcc 813  Q
    ||||||| |||||||||||||||||||||| |||| || |||||||    
7501065 tgaagatcaccttcatcttcacgatccattgatcaaagttcttgcc 7501110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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