View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8335_low_2 (Length: 520)
Name: NF8335_low_2
Description: NF8335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8335_low_2 |
 | |
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| [»] scaffold0014 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 339; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 143 - 501
Target Start/End: Complemental strand, 33049978 - 33049621
Alignment:
| Q |
143 |
cacatattcaccttcctccatattcagcatctcgtattgttttcttaatgcttgaagcctcactttcttcaatttttcatatccataatacaatctctca |
242 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
33049978 |
cacatattcaccatcctccatattca-catctcgtattgttttcttaatgcttgaagcctcactttcttcaattttttatatccataatacaatctctca |
33049880 |
T |
|
| Q |
243 |
agtgtatctcaagtttctttcgcattttcacaacgcataatcttctcaaaaatatcactattcacacactagtgaatgagaaacattgcatttccatgtt |
342 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33049879 |
agtgtatctcaagtttctttcgcattttcacaacgcataatcttctcaaaaatatcactattcacacactagtgaatgagaaacattgcatttccatgtt |
33049780 |
T |
|
| Q |
343 |
tcttcttcgtatctttgtttgcagtttgttgaacctcagttgtgtttcttgcaagtgttggtataatatcgttcacaacatcaagaacatattggtatat |
442 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33049779 |
tcttcttcgtatctttgtttgcagtttgttgaacctcagttgcgtttcttgcaagtgttggtataatatcgttcacaacatcaagaacatattggtatat |
33049680 |
T |
|
| Q |
443 |
gaagattaccttcatcttcacgatccattcatcatagctcttgccattgaacactgata |
501 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33049679 |
gaagattaccttcatcttcacgatccattcatcatagctcttgccattgaacactgata |
33049621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 292
Target Start/End: Complemental strand, 9504504 - 9504236
Alignment:
| Q |
24 |
tgatcaaatcttggtgtcaaaattctgagaaccttttctaacttcatcaattcagtgattgtatcattatttcttatcatctgatttgctagattcacca |
123 |
Q |
| |
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||||||||||||| ||| || || ||||||||||||| | |||||||| ||||||| || ||| ||| ||| |||||||||||| ||||| | || |
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|
| T |
9504504 |
tgatcaaatcttgatgttaaggttttgagaaccttttccaccttcatcacatcagtgacagtttcaccattccttgtcatctgatttgtaagattgatca |
9504405 |
T |
|
| Q |
124 |
gtttatcaaagtattgactcacatattcaccttcctccatattcagcatctcgtattgttttcttaatgcttgaagcctcactttcttcaatttttcata |
223 |
Q |
| |
|
||||||||||||||||| ||| |||| |||| ||||| ||| || || || ||| |||| || | |||||| ||||| |||||||| || ||| |
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| T |
9504404 |
ccttatcaaagtattgactaacagattcttcttcttccattgtcaacacttcatactgtcttctcaaaggttgaagtctcaccttcttcaacttaccatc |
9504305 |
T |
|
| Q |
224 |
tccataatacaatctctcaagtgtatctcaagtttctttcgcattttcacaacgcataatcttctcaaa |
292 |
Q |
| |
|
|||||||||||| |||| | |||||| || || || ||| | ||||| || |||| ||||||||||| |
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|
| T |
9504304 |
accataatacaatttctctaatgtatcccatgtctccttcacgctttcataatgcatgatcttctcaaa |
9504236 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 105; Significance: 3e-52; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 177 - 489
Target Start/End: Original strand, 28452357 - 28452669
Alignment:
| Q |
177 |
tattgttttcttaatgcttgaagcctcactttcttcaatttttcatatccataatacaatctctcaagtgtatctcaagtttctttcgcattttcacaac |
276 |
Q |
| |
|
|||||| | |||||||||||||| | ||| |||||||| ||| ||| |||| ||||||| |||| || |||||||||||||| |||||||||||||| |
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|
| T |
28452357 |
tattgtctccttaatgcttgaagtcccaccttcttcaactttccatctccagaatacaacctcttaatagtatctcaagtttccttcgcattttcacagt |
28452456 |
T |
|
| Q |
277 |
gcataatcttctcaaaaatatcactattcacacactagtgaatgagaaacattgcatttccatgtttcttcttcgtatctttgtttgcagtttgttgaac |
376 |
Q |
| |
|
|||| |||||||| ||||| ||| ||| |||| ||||||||||||||||||| || |||| ||| ||||||| |||||| | | || |||||||||| |
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|
| T |
28452457 |
gcatgatcttctccaaaatctcatcattaacaccatagtgaatgagaaacattgatttcccatcttttttcttcgcatctttatgtccaatttgttgaac |
28452556 |
T |
|
| Q |
377 |
ctcagttgtgtttcttgcaagtgttggtataatatcgttcacaacatcaagaacatattggtatatgaagattaccttcatcttcacgatccattcatca |
476 |
Q |
| |
|
||| ||||||||||||||||| |||||| | ||| ||| || |||||||||||| ||| || ||| ||||||||||||||||||||||||| |||| |
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| T |
28452557 |
ctctgttgtgtttcttgcaagcattggtagaccatccttcgcagcatcaagaacatcttgataccggaatattaccttcatcttcacgatccattgatca |
28452656 |
T |
|
| Q |
477 |
tagctcttgccat |
489 |
Q |
| |
|
|| ||||||||| |
|
|
| T |
28452657 |
taaatcttgccat |
28452669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 5e-20; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 24 - 214
Target Start/End: Original strand, 45496331 - 45496521
Alignment:
| Q |
24 |
tgatcaaatcttggtgtcaaaattctgagaaccttttctaacttcatcaattcagtgattgtatcattatttcttatcatctgatttgctagattcacca |
123 |
Q |
| |
|
||||||||||||| ||| || |||||||||||||||| | |||||||| ||||||| || ||| ||| |||||||||||||||| |||||| | || |
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|
| T |
45496331 |
tgatcaaatcttgatgttaaggttctgagaaccttttccaccttcatcacatcagtgacagtttcaccattccttatcatctgatttgttagattgatca |
45496430 |
T |
|
| Q |
124 |
gtttatcaaagtattgactcacatattcaccttcctccatattcagcatctcgtattgttttcttaatgcttgaagcctcactttcttcaa |
214 |
Q |
| |
|
||||||||||||||||| |||||||| |||| ||||| ||| || || || ||| |||| || |||||||| ||||| |||||||| |
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|
| T |
45496431 |
ccttatcaaagtattgactaacatattcttcttcttccattgtcaacacttcatactgtcttctcaaagcttgaagtctcaccttcttcaa |
45496521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 24 - 214
Target Start/End: Original strand, 45504073 - 45504263
Alignment:
| Q |
24 |
tgatcaaatcttggtgtcaaaattctgagaaccttttctaacttcatcaattcagtgattgtatcattatttcttatcatctgatttgctagattcacca |
123 |
Q |
| |
|
||||||||||||| ||| || |||||||||||||||| | |||||||| ||||||| || ||| ||| |||||||||||||||| |||||| | || |
|
|
| T |
45504073 |
tgatcaaatcttgatgttaaggttctgagaaccttttccaccttcatcacatcagtgacagtttcaccattccttatcatctgatttgttagattgatca |
45504172 |
T |
|
| Q |
124 |
gtttatcaaagtattgactcacatattcaccttcctccatattcagcatctcgtattgttttcttaatgcttgaagcctcactttcttcaa |
214 |
Q |
| |
|
||||||||||||||||| |||||||| |||| ||||| ||| || || || ||| |||| || |||||||| ||||| |||||||| |
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|
| T |
45504173 |
ccttatcaaagtattgactaacatattcttcttcttccattgtcaacacttcatactgtcttctcaaagcttgaagtctcaccttcttcaa |
45504263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 24 - 214
Target Start/End: Original strand, 21793768 - 21793958
Alignment:
| Q |
24 |
tgatcaaatcttggtgtcaaaattctgagaaccttttctaacttcatcaattcagtgattgtatcattatttcttatcatctgatttgctagattcacca |
123 |
Q |
| |
|
||||||||||||| ||| || |||||||||||||||| | |||||||| ||||||| || ||| ||| ||| |||||||||||| ||||| | || |
|
|
| T |
21793768 |
tgatcaaatcttgatgttaaggttctgagaaccttttccaccttcatcacatcagtgacagtttcaccattccttgtcatctgatttgtaagattgatca |
21793867 |
T |
|
| Q |
124 |
gtttatcaaagtattgactcacatattcaccttcctccatattcagcatctcgtattgttttcttaatgcttgaagcctcactttcttcaa |
214 |
Q |
| |
|
||||||||||||||||| ||| |||| |||| ||||| ||| || || || ||| |||| || |||||||| ||||| |||||||| |
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|
| T |
21793868 |
ccttatcaaagtattgactaacaaattcttcttcttccattgtcaacacttcatactgtcttctcaaagcttgaagtctcaccttcttcaa |
21793958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 214
Target Start/End: Complemental strand, 5984288 - 5984098
Alignment:
| Q |
24 |
tgatcaaatcttggtgtcaaaattctgagaaccttttctaacttcatcaattcagtgattgtatcattatttcttatcatctgatttgctagattcacca |
123 |
Q |
| |
|
||||||||||||| ||| || || ||||||| ||||| | |||||||| ||||||| || ||| |||| ||| |||||||||||| ||||| | || |
|
|
| T |
5984288 |
tgatcaaatcttgatgttaaggttatgagaactttttccaccttcatcacatcagtgacagtttcactattccttgtcatctgatttgtaagattgagca |
5984189 |
T |
|
| Q |
124 |
gtttatcaaagtattgactcacatattcaccttcctccatattcagcatctcgtattgttttcttaatgcttgaagcctcactttcttcaa |
214 |
Q |
| |
|
||||||||||||||||| ||| |||| |||| ||||| ||| || || || ||| |||| || |||||||| ||||| |||||||| |
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|
| T |
5984188 |
ccttatcaaagtattgactaacagattcttcttcttccattgtcaacacttcatactgtcttctcaaagcttgaagtctcaccttcttcaa |
5984098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 354 - 478
Target Start/End: Original strand, 11355747 - 11355871
Alignment:
| Q |
354 |
tctttgtttgcagtttgttgaacctcagttgtgtttcttgcaagtgttggtataatatcgttcacaacatcaagaacatattggtatatgaagattacct |
453 |
Q |
| |
|
||||||||||||| ||||| || ||||||| ||||||||| | || ||||| ||| || ||||| |||||||||| ||||||| ||||||| |||| |
|
|
| T |
11355747 |
tctttgtttgcagcttgtttcacatcagttgcgtttcttgccaatgctggtaccccatcattaacaacttcaagaacatcttggtatctgaagatcacct |
11355846 |
T |
|
| Q |
454 |
tcatcttcacgatccattcatcata |
478 |
Q |
| |
|
||||||||||||||||| |||||| |
|
|
| T |
11355847 |
ccatcttcacgatccattgatcata |
11355871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 24 - 217
Target Start/End: Original strand, 16847146 - 16847339
Alignment:
| Q |
24 |
tgatcaaatcttggtgtcaaaattctgagaaccttttctaacttcatcaattcagtgattgtatcattatttcttatcatctgatttgctagattcacca |
123 |
Q |
| |
|
||||||||| ||| ||| || |||||||||||||||| | |||||||| ||||||| || ||| ||| ||| |||||||||||| ||||| | || |
|
|
| T |
16847146 |
tgatcaaattttgatgttaaggttctgagaaccttttccaccttcatcacatcagtgacagtttcaccattccttgtcatctgatttgtaagattgatca |
16847245 |
T |
|
| Q |
124 |
gtttatcaaagtattgactcacatattcaccttcctccatattcagcatctcgtattgttttcttaatgcttgaagcctcactttcttcaattt |
217 |
Q |
| |
|
||||||||||||||||| ||| |||| |||| ||||| ||| || || || ||| |||| || ||||| || ||||| ||||||||||| |
|
|
| T |
16847246 |
ccttatcaaagtattgactaacaaattcttcttcttccattgtcaacacttcataatgtcttctcaaagcttgcagtctcaccttcttcaattt |
16847339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 24 - 151
Target Start/End: Complemental strand, 61934 - 61808
Alignment:
| Q |
24 |
tgatcaaatcttggtgtcaaaattctgagaaccttttctaacttcatcaattcagtgattgtatcattatttcttatcatctgatttgctagattcacca |
123 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||||| | |||||||| |||||||| || ||| ||| ||| |||||||||||| ||||| | || |
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|
| T |
61934 |
tgatcaaatcttgatgtcacgattctgagaaccttttccaccttcatcacatcagtgatagtttcaccattccttgtcatctgatttgtaagattga-ca |
61836 |
T |
|
| Q |
124 |
gtttatcaaagtattgactcacatattc |
151 |
Q |
| |
|
||||||||||||||||| |||||||| |
|
|
| T |
61835 |
ccttatcaaagtattgactaacatattc |
61808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 442 - 487
Target Start/End: Original strand, 7501065 - 7501110
Alignment:
| Q |
442 |
tgaagattaccttcatcttcacgatccattcatcatagctcttgcc |
487 |
Q |
| |
|
||||||| |||||||||||||||||||||| |||| || ||||||| |
|
|
| T |
7501065 |
tgaagatcaccttcatcttcacgatccattgatcaaagttcttgcc |
7501110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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