View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8336_high_1 (Length: 473)
Name: NF8336_high_1
Description: NF8336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8336_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 156; Significance: 1e-82; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 269 - 452
Target Start/End: Complemental strand, 35520804 - 35520621
Alignment:
| Q |
269 |
ttttgggacaatggcttctcttgtaatgattcttagcacaaatcaatgacttcaatggttgaaacttgacatgcttttggttccatctacacccttcttg |
368 |
Q |
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| T |
35520804 |
ttttgggacaatgacttctcttgtaatgattcttagcacaaatcaatgacttcaatggttgaaacttggcatgtttttggttccatctacaccctgcttg |
35520705 |
T |
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| Q |
369 |
aggacatgaacatttcttatttttcatactcatcaaataatctctattcttattaattggattgctcaatgctacactactctt |
452 |
Q |
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| T |
35520704 |
aggacatgaatatttcctatttttcatactcatcaaataatctctattcttattaattggattgctcaatgctgcactactctt |
35520621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 16 - 93
Target Start/End: Complemental strand, 35522890 - 35522813
Alignment:
| Q |
16 |
ctaatggagttggaccttccgatgttcgccggttcactttgcatcttacaattgtcacggagatataattagacatat |
93 |
Q |
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| T |
35522890 |
ctaaaggagttggaccttccgatgctcgtcagttcactttgtatcttacaattgtcgtggagatataattagacatat |
35522813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 48 - 88
Target Start/End: Complemental strand, 35525812 - 35525772
Alignment:
| Q |
48 |
ttcactttgcatcttacaattgtcacggagatataattaga |
88 |
Q |
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| T |
35525812 |
ttcactttgcatcttacaattgtcgtggagatataactaga |
35525772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 35548156 - 35548104
Alignment:
| Q |
16 |
ctaatggagttggaccttccgatgttcgccggttcactttgcatcttacaatt |
68 |
Q |
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| T |
35548156 |
ctaatggagatggaccttccgttgctcggcggttcactttgcgtcttagaatt |
35548104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 93
Target Start/End: Original strand, 35923566 - 35923642
Alignment:
| Q |
18 |
aatggagttggaccttccgatgttcgccggttcactttgcatcttacaattgtcacggagatat-aattagacatat |
93 |
Q |
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| T |
35923566 |
aatggagttggactttccgatgcttgccaattcactttgcgtcttacatttgttgtggagatataaattagacatat |
35923642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 71
Target Start/End: Complemental strand, 29683329 - 29683278
Alignment:
| Q |
20 |
tggagttggaccttccgatgttcgccggttcactttgcatcttacaattgtc |
71 |
Q |
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| T |
29683329 |
tggagttggaccttccgatgctcgtcggttcactttgcatcttagaattgtc |
29683278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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