View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8336_low_3 (Length: 446)

Name: NF8336_low_3
Description: NF8336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8336_low_3
NF8336_low_3
[»] chr3 (13 HSPs)
chr3 (50-227)||(26066822-26066998)
chr3 (50-219)||(42375053-42375221)
chr3 (50-219)||(42403767-42403935)
chr3 (50-226)||(12007168-12007344)
chr3 (69-227)||(52275642-52275800)
chr3 (337-387)||(40108440-40108490)
chr3 (176-226)||(54760427-54760477)
chr3 (15-52)||(42374998-42375035)
chr3 (15-52)||(42403712-42403749)
chr3 (13-52)||(12007362-12007401)
chr3 (74-170)||(15279965-15280060)
chr3 (190-226)||(21631380-21631416)
chr3 (191-227)||(36100514-36100550)
[»] chr2 (4 HSPs)
chr2 (50-227)||(13098272-13098448)
chr2 (50-229)||(29609017-29609195)
chr2 (13-52)||(13098466-13098505)
chr2 (176-218)||(1074224-1074266)
[»] chr1 (18 HSPs)
chr1 (50-225)||(7733549-7733723)
chr1 (50-227)||(37381549-37381725)
chr1 (50-226)||(11166819-11166994)
chr1 (50-226)||(41767807-41767982)
chr1 (50-225)||(46387875-46388049)
chr1 (50-227)||(4297203-4297379)
chr1 (50-224)||(7698840-7699011)
chr1 (96-227)||(50985593-50985723)
chr1 (337-427)||(23304038-23304127)
chr1 (13-52)||(11166762-11166801)
chr1 (13-52)||(37381743-37381782)
chr1 (13-52)||(41768000-41768039)
chr1 (13-52)||(46387818-46387857)
chr1 (13-52)||(50985781-50985820)
chr1 (190-223)||(41771182-41771215)
chr1 (190-226)||(7731070-7731106)
chr1 (190-226)||(46323221-46323257)
chr1 (13-52)||(4297146-4297185)
[»] chr5 (6 HSPs)
chr5 (50-226)||(20407559-20407734)
chr5 (190-227)||(125614-125651)
chr5 (190-226)||(20405091-20405127)
chr5 (13-52)||(20407501-20407540)
chr5 (190-223)||(34992316-34992349)
chr5 (344-424)||(19082157-19082236)
[»] chr4 (6 HSPs)
chr4 (60-227)||(36040685-36040851)
chr4 (337-427)||(36757298-36757387)
chr4 (70-228)||(54959895-54960052)
chr4 (190-226)||(37082652-37082688)
chr4 (13-52)||(36040621-36040660)
chr4 (190-226)||(14198528-14198564)
[»] chr8 (7 HSPs)
chr8 (50-218)||(37741967-37742134)
chr8 (50-226)||(44843184-44843359)
chr8 (50-166)||(28130669-28130784)
chr8 (144-226)||(28130785-28130867)
chr8 (13-52)||(28130611-28130650)
chr8 (13-52)||(44843127-44843166)
chr8 (13-50)||(37742154-37742191)
[»] chr6 (6 HSPs)
chr6 (50-229)||(18273073-18273251)
chr6 (337-427)||(8925187-8925277)
chr6 (337-427)||(8935444-8935534)
chr6 (190-226)||(30698603-30698639)
chr6 (13-52)||(18273016-18273055)
chr6 (70-218)||(5325873-5326020)
[»] chr7 (9 HSPs)
chr7 (50-227)||(46373387-46373556)
chr7 (102-226)||(29054603-29054726)
chr7 (69-122)||(22882968-22883021)
chr7 (343-422)||(3776361-3776441)
chr7 (190-226)||(34346801-34346837)
chr7 (190-226)||(46369670-46369706)
chr7 (13-52)||(46373330-46373369)
chr7 (190-227)||(22883053-22883090)
chr7 (187-227)||(293048-293088)
[»] scaffold2013 (1 HSPs)
scaffold2013 (190-226)||(722-758)


Alignment Details
Target: chr3 (Bit Score: 150; Significance: 4e-79; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 50 - 227
Target Start/End: Original strand, 26066822 - 26066998
Alignment:
Q  50 actaaactattagttctttgtagttacatgacatcatcttagttaattgtggtaatttggttgaataaagtaagttaaaagacagattttacccttactt 149  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  26066822 actaaactattagttatttgtagttacatgacatcatcttagttaattgtggtaatttggttgaataaagtaagttaaa-gacagattttacccttactt 26066920  T
Q  150 taatgatttgtcaattaaccaagctggggtattaataggatttccacaacatcttctcttcttatattaagagagatt 227  Q
    |  |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  26066921 tggtgatttgtcaattaaccaggctggggcattaataggatttccacaacatcttctcttcttatattaagagagatt 26066998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 50 - 219
Target Start/End: Original strand, 42375053 - 42375221
Alignment:
Q  50 actaaactattagttctttgtagttacatgacatcatcttagttaattgtggtaatttggttgaataaagtaagttaaaagacagattttacccttactt 149  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  42375053 actaaactattagttatttgtagttacatgacatcatcttagttaattgtggtaatttggttgaataaagtaagttaaa-gacagattttacccttactt 42375151  T
Q  150 taatgatttgtcaattaaccaagctggggtattaataggatttccacaacatcttctcttcttatattaa 219  Q
    |  |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  42375152 tggtgatttgtcaattaaccaggctggggcattaataggatttccacaacatcttctcttcttatattaa 42375221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 50 - 219
Target Start/End: Original strand, 42403767 - 42403935
Alignment:
Q  50 actaaactattagttctttgtagttacatgacatcatcttagttaattgtggtaatttggttgaataaagtaagttaaaagacagattttacccttactt 149  Q
    ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  42403767 actaaactattagttatttgtagttatatgacatcatcttagttaattgtggtaatttggttgaataaagtaagttaaa-gacagattttacccttactt 42403865  T
Q  150 taatgatttgtcaattaaccaagctggggtattaataggatttccacaacatcttctcttcttatattaa 219  Q
    |  |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  42403866 tggtgatttgtcaattaaccaggctggggcattaataggatttccacaacatcttctcttcttatattaa 42403935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 50 - 226
Target Start/End: Complemental strand, 12007344 - 12007168
Alignment:
Q  50 actaaactattagttctttgtagttacatgacatcatcttagttaattgtggtaatttggttgaataaagtaagttaaaagacagattttacccttactt 149  Q
    ||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  12007344 actaaactattagttatttgtagttacatgacatcaacttagtgaattgtggtaatttggttgaataaagtaagttaaaagacagattttaccattactt 12007245  T
Q  150 taatgatttgtcaattaaccaagctggggtattaataggatttccacaacatcttctcttcttatattaagagagat 226  Q
    |  |||||||||||||||||| | ||||| || ||||||||||||||||||||||||||||||||||||||||||||    
T  12007244 tggtgatttgtcaattaaccaggttggggcatgaataggatttccacaacatcttctcttcttatattaagagagat 12007168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 69 - 227
Target Start/End: Complemental strand, 52275800 - 52275642
Alignment:
Q  69 gtagttacatgacatcatcttagttaattgtggtaatttggttgaataaagtaagttaaaagacagattttacccttactttaatgatttgtcaattaac 168  Q
    ||||||||||||||||||| |||||||||||||| |||| ||| |||||||||| ||  | ||||  ||||||||| | ||   ||||||| |||   |     
T  52275800 gtagttacatgacatcatcatagttaattgtggtcatttagttcaataaagtaattttca-gacaacttttaccctcaattgtgtgatttggcaagccaa 52275702  T
Q  169 caagct-ggggtattaataggatttccacaacatcttctcttcttatattaagagagatt 227  Q
    | |||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||    
T  52275701 ccagcttggggtaataataggttttccacaacatcttctcttcttatattaagagagatt 52275642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 337 - 387
Target Start/End: Original strand, 40108440 - 40108490
Alignment:
Q  337 cacatcaaactcactcccataacacatgctacttgcaaaaacatcaatatt 387  Q
    |||||||||||||||||||||||||||||| | ||||||| ||||||||||    
T  40108440 cacatcaaactcactcccataacacatgctccatgcaaaatcatcaatatt 40108490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 176 - 226
Target Start/End: Complemental strand, 54760477 - 54760427
Alignment:
Q  176 gggtattaataggatttccacaacatcttctcttcttatattaagagagat 226  Q
    ||||| ||||||  |||||||||||||||||||||||||||||||||||||    
T  54760477 gggtaataatagattttccacaacatcttctcttcttatattaagagagat 54760427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 42374998 - 42375035
Alignment:
Q  15 aatcggatttatttagctggcatcaaatggaaatgact 52  Q
    |||||||||||||||| |||||||||||||||||||||    
T  42374998 aatcggatttatttagttggcatcaaatggaaatgact 42375035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 42403712 - 42403749
Alignment:
Q  15 aatcggatttatttagctggcatcaaatggaaatgact 52  Q
    |||||||||||||||| |||||||||||||||||||||    
T  42403712 aatcggatttatttagttggcatcaaatggaaatgact 42403749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 52
Target Start/End: Complemental strand, 12007401 - 12007362
Alignment:
Q  13 aaaatcggatttatttagctggcatcaaatggaaatgact 52  Q
    |||||||||||||||||| || ||||||||||||||||||    
T  12007401 aaaatcggatttatttagttgacatcaaatggaaatgact 12007362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 170
Target Start/End: Original strand, 15279965 - 15280060
Alignment:
Q  74 tacatgacatcatcttagttaattgtggtaatttggttgaataaagtaagttaaaagacagattttacccttactttaatgatttgtcaattaacca 170  Q
    ||||||||||||| ||||||| |  |||| |||||||||| |||||||| || | |||||| ||||||| |||  ||  |||||||||||| |||||    
T  15279965 tacatgacatcatgttagttattcatggttatttggttgattaaagtaa-tttatagacagcttttacctttaacttgctgatttgtcaataaacca 15280060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 190 - 226
Target Start/End: Complemental strand, 21631416 - 21631380
Alignment:
Q  190 tttccacaacatcttctcttcttatattaagagagat 226  Q
    |||| ||||||||||||||||||| ||||||||||||    
T  21631416 tttctacaacatcttctcttcttacattaagagagat 21631380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 191 - 227
Target Start/End: Original strand, 36100514 - 36100550
Alignment:
Q  191 ttccacaacatcttctcttcttatattaagagagatt 227  Q
    ||||||||||||||| ||||||| |||||||||||||    
T  36100514 ttccacaacatcttcccttcttaaattaagagagatt 36100550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 150; Significance: 4e-79; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 50 - 227
Target Start/End: Complemental strand, 13098448 - 13098272
Alignment:
Q  50 actaaactattagttctttgtagttacatgacatcatcttagttaattgtggtaatttggttgaataaagtaagttaaaagacagattttacccttactt 149  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  13098448 actaaactattagttatttgtagttacatgacatcatcttagttaattgtggtaatttggttgaataaagtaagttaaa-gacagattttacccttactt 13098350  T
Q  150 taatgatttgtcaattaaccaagctggggtattaataggatttccacaacatcttctcttcttatattaagagagatt 227  Q
    |  |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  13098349 tggtgatttgtcaattaaccaggctggggcattaataggatttccacaacatcttctcttcttatattaagagagatt 13098272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 50 - 229
Target Start/End: Original strand, 29609017 - 29609195
Alignment:
Q  50 actaaactattagttctttgtagttacatgacatcatcttagttaattgtggtaatttggttgaataaagtaagttaaaagacagattttacccttactt 149  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||    
T  29609017 actaaactattagttatttgtagttacatgacatcatcttagttaattgtggtaatttggttgaataaagtaagttaaa-gacaaattttacccttactt 29609115  T
Q  150 taatgatttgtcaattaaccaagctggggtattaataggatttccacaacatcttctcttcttatattaagagagattct 229  Q
    |  |||||||||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29609116 tggtgatttgtcaattaactaggctggggcattaataggatttccacaacatcttctcttcttatattaagagagattct 29609195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 52
Target Start/End: Complemental strand, 13098505 - 13098466
Alignment:
Q  13 aaaatcggatttatttagctggcatcaaatggaaatgact 52  Q
    |||||||||||||||||| ||||||||||||| |||||||    
T  13098505 aaaatcggatttatttagttggcatcaaatgggaatgact 13098466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 176 - 218
Target Start/End: Complemental strand, 1074266 - 1074224
Alignment:
Q  176 gggtattaataggatttccacaacatcttctcttcttatatta 218  Q
    ||||| ||||||  |||||||||||||||||||||||||||||    
T  1074266 gggtaataatagattttccacaacatcttctcttcttatatta 1074224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 148; Significance: 6e-78; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 50 - 225
Target Start/End: Original strand, 7733549 - 7733723
Alignment:
Q  50 actaaactattagttctttgtagttacatgacatcatcttagttaattgtggtaatttggttgaataaagtaagttaaaagacagattttacccttactt 149  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  7733549 actaaactattagttatttgtagttacatgacatcatcttagttaattgtggtaatttggttgaataaagtaagttaaa-gacagattttacccttactt 7733647  T
Q  150 taatgatttgtcaattaaccaagctggggtattaataggatttccacaacatcttctcttcttatattaagagaga 225  Q
    |  |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  7733648 tggtgatttgtcaattaaccaggctggggcattaataggatttccacaacatcttctcttcttatattaagagaga 7733723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 50 - 227
Target Start/End: Complemental strand, 37381725 - 37381549
Alignment:
Q  50 actaaactattagttctttgtagttacatgacatcatcttagttaattgtggtaatttggttgaataaagtaagttaaaagacagattttacccttactt 149  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  37381725 actaaactattagttatttgtagttacatgacatcatcttagttaattgtggtaatttggttgaataaagtaagttaaa-gacagattttacccttactt 37381627  T
Q  150 taatgatttgtcaattaaccaagctggggtattaataggatttccacaacatcttctcttcttatattaagagagatt 227  Q
    |  |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||    
T  37381626 tggtgatttgtcaattaaccaggctggggcattaataggatttccacaacatcttctcttcttatattaatagagatt 37381549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 50 - 226
Target Start/End: Original strand, 11166819 - 11166994
Alignment:
Q  50 actaaactattagttctttgtagttacatgacatcatcttagttaattgtggtaatttggttgaataaagtaagttaaaagacagattttacccttactt 149  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  11166819 actaaactattagttatttgtagttacatgacatcatcttagttaattgtggtaatttggttgaataaagtaagttaaa-gacagattttacccttactt 11166917  T
Q  150 taatgatttgtcaattaaccaagctggggtattaataggatttccacaacatcttctcttcttatattaagagagat 226  Q
    |  ||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  11166918 tggtgatttgtcaattaatcaggctggggcattaataggatttccacaacatcttctcttcttatattaagagagat 11166994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 50 - 226
Target Start/End: Complemental strand, 41767982 - 41767807
Alignment:
Q  50 actaaactattagttctttgtagttacatgacatcatcttagttaattgtggtaatttggttgaataaagtaagttaaaagacagattttacccttactt 149  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  41767982 actaaactattagttatttgtagttacatgacatcatcttagttaattgtggtaatttggttgaataaagtaagttaaa-gacagattttacccttactt 41767884  T
Q  150 taatgatttgtcaattaaccaagctggggtattaataggatttccacaacatcttctcttcttatattaagagagat 226  Q
    |  |||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||    
T  41767883 tggtgatttgtcaattaaccaggctggggcattaataggatttccacaacattttctcttcttatattaagagagat 41767807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 50 - 225
Target Start/End: Original strand, 46387875 - 46388049
Alignment:
Q  50 actaaactattagttctttgtagttacatgacatcatcttagttaattgtggtaatttggttgaataaagtaagttaaaagacagattttacccttactt 149  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||    
T  46387875 actaaactattagttatttgtagttacatgacatcatcttagttaattgtggtaatttggttgaataaagtaagttaaa-gacaaattttacccttactt 46387973  T
Q  150 taatgatttgtcaattaaccaagctggggtattaataggatttccacaacatcttctcttcttatattaagagaga 225  Q
    |  |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  46387974 tggtgatttgtcaattaaccaggctggggcattaataggatttccacaacatcttctcttcttatattaagagaga 46388049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 50 - 227
Target Start/End: Original strand, 4297203 - 4297379
Alignment:
Q  50 actaaactattagttctttgtagttacatgacatcatcttagttaattgtggtaatttggttgaataaagtaagttaaaagacagattttacccttactt 149  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  4297203 actaaactattagttatttgtagttacatgacatcatcttagttaattgtggtaatttggttgaataaagtaagttaaa-gacagattttacccttactt 4297301  T
Q  150 taatgatttgtcaattaaccaagctggggtattaataggatttccacaacatcttctcttcttatattaagagagatt 227  Q
    |  ||||||||||||||||||  |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  4297302 tggtgatttgtcaattaaccagactggggcattaataggatttccacaacatcttctcttcttatatcaagagagatt 4297379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 50 - 224
Target Start/End: Complemental strand, 7699011 - 7698840
Alignment:
Q  50 actaaactattagttctttgtagttacatgacatcatcttagttaattgtggtaatttggttgaataaagtaagttaaaagacagattttacccttactt 149  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  7699011 actaaactattagttatttgtagttacatgacatcatcttagttaattgtggtaatttggttgaataaagtaagtt-aaagacagattttacccttactt 7698913  T
Q  150 taatgatttgtcaattaaccaagctggggtattaataggatttccacaacatcttctcttcttatattaagagag 224  Q
    |  |||||||||||||||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  7698912 t-gtgatttgtcaattaaccaggctggggcattaatagga-ttccacaacatcttctcttcttatattaagagag 7698840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 96 - 227
Target Start/End: Complemental strand, 50985723 - 50985593
Alignment:
Q  96 ttgtggtaatttggttgaataaagtaagttaaaagacagattttacccttactttaatgatttgtcaattaaccaagctggggtattaataggatttcca 195  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||  |||||||||||||||||| ||||||| ||||||||||||||||    
T  50985723 ttgtggtaatttggttgaataaagtaagttaaa-gacagattttacccttactttggtgatttgtcaattaaccaggctggggcattaataggatttcca 50985625  T
Q  196 caacatcttctcttcttatattaagagagatt 227  Q
    ||||||||||||||||||||||||||||||||    
T  50985624 caacatcttctcttcttatattaagagagatt 50985593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 337 - 427
Target Start/End: Complemental strand, 23304127 - 23304038
Alignment:
Q  337 cacatcaaactcactcccataacacatgctacttgcaaaaacatcaatatttcaatgtaaatattggtgaagagccagcttatgctacggt 427  Q
    |||||||||||||||||||||||||||||| | ||||||| |||||||| ||| ||||||| |||| ||||||  | ||||||||||||||    
T  23304127 cacatcaaactcactcccataacacatgctccatgcaaaatcatcaata-ttccatgtaaaaattgatgaagattcggcttatgctacggt 23304038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 52
Target Start/End: Original strand, 11166762 - 11166801
Alignment:
Q  13 aaaatcggatttatttagctggcatcaaatggaaatgact 52  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  11166762 aaaatcggatttatttagttggcatcaaatggaaatgact 11166801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 52
Target Start/End: Complemental strand, 37381782 - 37381743
Alignment:
Q  13 aaaatcggatttatttagctggcatcaaatggaaatgact 52  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  37381782 aaaatcggatttatttagttggcatcaaatggaaatgact 37381743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 52
Target Start/End: Complemental strand, 41768039 - 41768000
Alignment:
Q  13 aaaatcggatttatttagctggcatcaaatggaaatgact 52  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  41768039 aaaatcggatttatttagttggcatcaaatggaaatgact 41768000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 52
Target Start/End: Original strand, 46387818 - 46387857
Alignment:
Q  13 aaaatcggatttatttagctggcatcaaatggaaatgact 52  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  46387818 aaaatcggatttatttagttggcatcaaatggaaatgact 46387857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 52
Target Start/End: Complemental strand, 50985820 - 50985781
Alignment:
Q  13 aaaatcggatttatttagctggcatcaaatggaaatgact 52  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  50985820 aaaatcggatttatttagttggcatcaaatggaaatgact 50985781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 190 - 223
Target Start/End: Complemental strand, 41771215 - 41771182
Alignment:
Q  190 tttccacaacatcttctcttcttatattaagaga 223  Q
    ||||||||||||||||||||||||||||||||||    
T  41771215 tttccacaacatcttctcttcttatattaagaga 41771182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 190 - 226
Target Start/End: Original strand, 7731070 - 7731106
Alignment:
Q  190 tttccacaacatcttctcttcttatattaagagagat 226  Q
    ||||||||| |||||||||||||||||||||||||||    
T  7731070 tttccacaatatcttctcttcttatattaagagagat 7731106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 190 - 226
Target Start/End: Original strand, 46323221 - 46323257
Alignment:
Q  190 tttccacaacatcttctcttcttatattaagagagat 226  Q
    |||||||||||||||| ||||||||||||||||||||    
T  46323221 tttccacaacatcttcccttcttatattaagagagat 46323257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 52
Target Start/End: Original strand, 4297146 - 4297185
Alignment:
Q  13 aaaatcggatttatttagctggcatcaaatggaaatgact 52  Q
    |||||||||||||||||| |||||||||||| ||||||||    
T  4297146 aaaatcggatttatttagttggcatcaaatgtaaatgact 4297185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 145; Significance: 4e-76; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 50 - 226
Target Start/End: Original strand, 20407559 - 20407734
Alignment:
Q  50 actaaactattagttctttgtagttacatgacatcatcttagttaattgtggtaatttggttgaataaagtaagttaaaagacagattttacccttactt 149  Q
    ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  20407559 actaaactattagttatttgtagttacatgacatcatcttggttaattgtggtaatttggttgaataaagtaagttaaa-gacagattttacccttactt 20407657  T
Q  150 taatgatttgtcaattaaccaagctggggtattaataggatttccacaacatcttctcttcttatattaagagagat 226  Q
    |  |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  20407658 tggtgatttgtcaattaaccaggctggggcattaataggatttccacaacatcttctcttcttatattaagagagat 20407734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 190 - 227
Target Start/End: Original strand, 125614 - 125651
Alignment:
Q  190 tttccacaacatcttctcttcttatattaagagagatt 227  Q
    ||||||||||||||||||||||||||||||||||||||    
T  125614 tttccacaacatcttctcttcttatattaagagagatt 125651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 190 - 226
Target Start/End: Original strand, 20405091 - 20405127
Alignment:
Q  190 tttccacaacatcttctcttcttatattaagagagat 226  Q
    |||||||||||||||||||||||||||||||||||||    
T  20405091 tttccacaacatcttctcttcttatattaagagagat 20405127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 52
Target Start/End: Original strand, 20407501 - 20407540
Alignment:
Q  13 aaaatcggatttatttagctggcatcaaatggaaatgact 52  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  20407501 aaaatcggatttatttagttggcatcaaatggaaatgact 20407540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 190 - 223
Target Start/End: Complemental strand, 34992349 - 34992316
Alignment:
Q  190 tttccacaacatcttctcttcttatattaagaga 223  Q
    ||||||||||||||||||||||||||||||||||    
T  34992349 tttccacaacatcttctcttcttatattaagaga 34992316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 344 - 424
Target Start/End: Original strand, 19082157 - 19082236
Alignment:
Q  344 aactcactcccataacacatgctacttgcaaaaacatcaatatttcaatgtaaatattggtgaagagccagcttatgctac 424  Q
    ||||||||||||||||||||||| | ||||||| |||||||| ||| ||||||| |||| | ||||  | |||||||||||    
T  19082157 aactcactcccataacacatgctccatgcaaaatcatcaata-ttccatgtaaaaattgattaagattcggcttatgctac 19082236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 140; Significance: 4e-73; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 60 - 227
Target Start/End: Original strand, 36040685 - 36040851
Alignment:
Q  60 tagttctttgtagttacatgacatcatcttagttaattgtggtaatttggttgaataaagtaagttaaaagacagattttacccttactttaatgatttg 159  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  |||||||    
T  36040685 tagttatttgtagttacatgacatcatcttagttaattgtggtaatttggttgaataaagtaagttaaa-gacagattttacccttactttggtgatttg 36040783  T
Q  160 tcaattaaccaagctggggtattaataggatttccacaacatcttctcttcttatattaagagagatt 227  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  36040784 tcaattaaccaggctggggcattaataggatttccacaacatcttctcttcttatattaagagagatt 36040851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 337 - 427
Target Start/End: Original strand, 36757298 - 36757387
Alignment:
Q  337 cacatcaaactcactcccataacacatgctacttgcaaaaacatcaatatttcaatgtaaatattggtgaagagccagcttatgctacggt 427  Q
    |||||||||||||||||||||||||||||| | ||||||| |||||||| ||| ||||||| |||| | ||||  | ||||||||||||||    
T  36757298 cacatcaaactcactcccataacacatgctccatgcaaaatcatcaata-ttccatgtaaaaattgattaagattcggcttatgctacggt 36757387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 70 - 228
Target Start/End: Complemental strand, 54960052 - 54959895
Alignment:
Q  70 tagttacatgacatcatcttagttaattgtggtaatttggttgaataaagtaagttaaaagacagattttacccttactttaatgatttgtcaattaacc 169  Q
    |||||||||||||||||| |||||||||||||| |||| ||  |||||||||| ||   |||||  ||||||| | | ||   ||||||| |||     |    
T  54960052 tagttacatgacatcatcatagttaattgtggtcatttagtacaataaagtaa-tttttagacaacttttaccttcaattgtgtgatttgacaagccctc 54959954  T
Q  170 aagctggggtattaataggatttccacaacatcttctcttcttatattaagagagattc 228  Q
    ||| | || || ||||||  |||||||||||||||||||||||||||||||||||||||    
T  54959953 aagttaggataataatagattttccacaacatcttctcttcttatattaagagagattc 54959895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 190 - 226
Target Start/End: Complemental strand, 37082688 - 37082652
Alignment:
Q  190 tttccacaacatcttctcttcttatattaagagagat 226  Q
    |||||||||||||||||||||||||||||||||||||    
T  37082688 tttccacaacatcttctcttcttatattaagagagat 37082652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 52
Target Start/End: Original strand, 36040621 - 36040660
Alignment:
Q  13 aaaatcggatttatttagctggcatcaaatggaaatgact 52  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  36040621 aaaatcggatttatttagttggcatcaaatggaaatgact 36040660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 190 - 226
Target Start/End: Complemental strand, 14198564 - 14198528
Alignment:
Q  190 tttccacaacatcttctcttcttatattaagagagat 226  Q
    |||||||||||||||| ||||||||||||||||||||    
T  14198564 tttccacaacatcttcccttcttatattaagagagat 14198528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 133; Significance: 5e-69; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 50 - 218
Target Start/End: Complemental strand, 37742134 - 37741967
Alignment:
Q  50 actaaactattagttctttgtagttacatgacatcatcttagttaattgtggtaatttggttgaataaagtaagttaaaagacagattttacccttactt 149  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||    
T  37742134 actaaactattagttatttgtagttacatgacatcatcttagttaattgtggtaatttagttgaataaagtaagttaaa-gacagattttacctttactt 37742036  T
Q  150 taatgatttgtcaattaaccaagctggggtattaataggatttccacaacatcttctcttcttatatta 218  Q
    |  |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||    
T  37742035 tggtgatttgtcaattaaccaggctggggcattaataggatttccacaacatcttctcttcttatatta 37741967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 50 - 226
Target Start/End: Original strand, 44843184 - 44843359
Alignment:
Q  50 actaaactattagttctttgtagttacatgacatcatcttagttaattgtggtaatttggttgaataaagtaagttaaaagacagattttacccttactt 149  Q
    ||||||||||||||| ||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |||||||||||||||    
T  44843184 actaaactattagttatttatagttacatgacatcatcttagttaattgttgtaatttggttgaataaagtaagttaaa-gacaaattttacccttactt 44843282  T
Q  150 taatgatttgtcaattaaccaagctggggtattaataggatttccacaacatcttctcttcttatattaagagagat 226  Q
    |  |||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  44843283 tggtgatttgtcaattaaccaggttggggcattaataggatttccacaacatcttctcttcttatattaagagagat 44843359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 50 - 166
Target Start/End: Original strand, 28130669 - 28130784
Alignment:
Q  50 actaaactattagttctttgtagttacatgacatcatcttagttaattgtggtaatttggttgaataaagtaagttaaaagacagattttacccttactt 149  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||||||||||||||||    
T  28130669 actaaactattagttatttgtagttacatgacatcatcttagttaattgtggtaatttggttgaataaagtaagtt-aaagcgagattttacccttactt 28130767  T
Q  150 taatgatttgtcaatta 166  Q
    |  ||||||||||||||    
T  28130768 tggtgatttgtcaatta 28130784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 144 - 226
Target Start/End: Original strand, 28130785 - 28130867
Alignment:
Q  144 ttactttaatgatttgtcaattaaccaagctggggtattaataggatttccacaacatcttctcttcttatattaagagagat 226  Q
    |||||||  |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||    
T  28130785 ttactttggtgatttgtcaattaaccaggctggggcattaataggatttccacaacatcttctcttcttttattaagagagat 28130867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 52
Target Start/End: Original strand, 28130611 - 28130650
Alignment:
Q  13 aaaatcggatttatttagctggcatcaaatggaaatgact 52  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  28130611 aaaatcggatttatttagttggcatcaaatggaaatgact 28130650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 52
Target Start/End: Original strand, 44843127 - 44843166
Alignment:
Q  13 aaaatcggatttatttagctggcatcaaatggaaatgact 52  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  44843127 aaaatcggatttatttagttggcatcaaatggaaatgact 44843166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 50
Target Start/End: Complemental strand, 37742191 - 37742154
Alignment:
Q  13 aaaatcggatttatttagctggcatcaaatggaaatga 50  Q
    |||||||||||||||||| |||||||||||| ||||||    
T  37742191 aaaatcggatttatttaggtggcatcaaatgaaaatga 37742154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 128; Significance: 5e-66; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 50 - 229
Target Start/End: Original strand, 18273073 - 18273251
Alignment:
Q  50 actaaactattagttctttgtagttacatgacatcatcttagttaattgtggtaatttggttgaataaagtaagttaaaagacagattttacccttactt 149  Q
    |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  18273073 actaaactattaattctttatagttacatgacatcatcttagttaattgtggtaatttggttgaataaagtaaattaaa-gacagattttacccttactt 18273171  T
Q  150 taatgatttgtcaattaaccaagctggggtattaataggatttccacaacatcttctcttcttatattaagagagattct 229  Q
    | ||||||||||||||||||||||  ||  |||||||| |||||||||||||||| |||| |||||||||||||||||||    
T  18273172 tgatgatttgtcaattaaccaagccaggacattaatagaatttccacaacatcttatctttttatattaagagagattct 18273251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 337 - 427
Target Start/End: Original strand, 8925187 - 8925277
Alignment:
Q  337 cacatcaaactcactcccataacacatgctacttgcaaaaacatcaatatttcaatgtaaatattggtgaagagccagcttatgctacggt 427  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8925187 cacatcaaactcactcccataatacatgctacttgcaaaaacatcaatatttcaatgtaaatattggtgaagagccagcttatgctacggt 8925277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 337 - 427
Target Start/End: Original strand, 8935444 - 8935534
Alignment:
Q  337 cacatcaaactcactcccataacacatgctacttgcaaaaacatcaatatttcaatgtaaatattggtgaagagccagcttatgctacggt 427  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8935444 cacatcaaactcactcccataatacatgctacttgcaaaaacatcaatatttcaatgtaaatattggtgaagagccagcttatgctacggt 8935534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 190 - 226
Target Start/End: Original strand, 30698603 - 30698639
Alignment:
Q  190 tttccacaacatcttctcttcttatattaagagagat 226  Q
    |||||||||||||||||||||||||||||||||||||    
T  30698603 tttccacaacatcttctcttcttatattaagagagat 30698639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 52
Target Start/End: Original strand, 18273016 - 18273055
Alignment:
Q  13 aaaatcggatttatttagctggcatcaaatggaaatgact 52  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  18273016 aaaatcggatttatttagttggcatcaaatggaaatgact 18273055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 70 - 218
Target Start/End: Complemental strand, 5326020 - 5325873
Alignment:
Q  70 tagttacatgacatcatcttagttaattgtggtaatttggttgaataaagtaagttaaaagacagattttacccttactttaatgatttgtcaattaacc 169  Q
    |||||| ||||||||||| |||||| || |||| |||| ||| |||||||||| || |  ||||  ||||||||| | ||   |||||||||||  ||||    
T  5326020 tagttatatgacatcatcgtagttagttatggtcatttagttcaataaagtaattttag-gacaacttttaccctcaattatgtgatttgtcaaccaacc 5325922  T
Q  170 aagctggggtattaataggatttccacaacatcttctcttcttatatta 218  Q
        | ||||| ||||||  |||||||||||||||||||||||||||||    
T  5325921 ggcatagggtaataatagattttccacaacatcttctcttcttatatta 5325873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 111; Significance: 7e-56; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 50 - 227
Target Start/End: Original strand, 46373387 - 46373556
Alignment:
Q  50 actaaactattagttctttgtagttacatgacatcatcttagttaattgtggtaatttggttgaataaagtaagttaaaagacagattttacccttactt 149  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||        
T  46373387 actaaactattagttatttgtagttacatgacatcatcttagttaattgtggtaatttgtttgaataaagtaagttaaa-gacagattttaccctt---- 46373481  T
Q  150 taatgatttgtcaattaaccaagctggggtattaataggatttccacaacatcttctcttcttatattaagagagatt 227  Q
    |  |||||||||||||||||| | ||||| ||||||||||||||||||||||||||   |||||||||||||||||||    
T  46373482 tggtgatttgtcaattaaccaggttggggcattaataggatttccacaacatcttc---tcttatattaagagagatt 46373556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 102 - 226
Target Start/End: Original strand, 29054603 - 29054726
Alignment:
Q  102 taatttggttgaataaagtaagttaaaagacagattttacccttactttaatgatttgtcaattaaccaagctggggtattaataggatttccacaacat 201  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||  |||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  29054603 taatttggttgaataaagtaagttaaa-gacagattttacccttactttggtgatttgtcaattaaccaggctggggcattaataggatttccacaacat 29054701  T
Q  202 cttctcttcttatattaagagagat 226  Q
    |||||||||||||||||||||||||    
T  29054702 cttctcttcttatattaagagagat 29054726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 69 - 122
Target Start/End: Original strand, 22882968 - 22883021
Alignment:
Q  69 gtagttacatgacatcatcttagttaattgtggtaatttggttgaataaagtaa 122  Q
    ||||||||||||||||||| |||||||||||||| |||| ||| ||||||||||    
T  22882968 gtagttacatgacatcatcatagttaattgtggtcatttagttcaataaagtaa 22883021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 343 - 422
Target Start/End: Original strand, 3776361 - 3776441
Alignment:
Q  343 aaactcactcccataacacatgctacttgcaaaaacatcaatattt-caatgtaaatattggtgaagagccagcttatgct 422  Q
    ||||||||||| | |||||||||| | |||||||||| |||||||| ||||||||| |||| |||| ||||| ||||||||    
T  3776361 aaactcactcctagaacacatgctccatgcaaaaacaccaatatttccaatgtaaaaattgctgaacagccaccttatgct 3776441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 190 - 226
Target Start/End: Original strand, 34346801 - 34346837
Alignment:
Q  190 tttccacaacatcttctcttcttatattaagagagat 226  Q
    |||||||||||||||||||||||||||||||||||||    
T  34346801 tttccacaacatcttctcttcttatattaagagagat 34346837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 190 - 226
Target Start/End: Original strand, 46369670 - 46369706
Alignment:
Q  190 tttccacaacatcttctcttcttatattaagagagat 226  Q
    |||||||||||||||||||||||||||||||||||||    
T  46369670 tttccacaacatcttctcttcttatattaagagagat 46369706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 52
Target Start/End: Original strand, 46373330 - 46373369
Alignment:
Q  13 aaaatcggatttatttagctggcatcaaatggaaatgact 52  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  46373330 aaaatcggatttatttagttggcatcaaatggaaatgact 46373369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 190 - 227
Target Start/End: Original strand, 22883053 - 22883090
Alignment:
Q  190 tttccacaacatcttctcttcttatattaagagagatt 227  Q
    |||||||||||||||| |||||||||||||||||||||    
T  22883053 tttccacaacatcttcccttcttatattaagagagatt 22883090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 187 - 227
Target Start/End: Complemental strand, 293088 - 293048
Alignment:
Q  187 ggatttccacaacatcttctcttcttatattaagagagatt 227  Q
    ||||||||||||||| |||| |||||||||||| |||||||    
T  293088 ggatttccacaacatgttcttttcttatattaatagagatt 293048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2013 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold2013
Description:

Target: scaffold2013; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 190 - 226
Target Start/End: Complemental strand, 758 - 722
Alignment:
Q  190 tttccacaacatcttctcttcttatattaagagagat 226  Q
    |||||||||||||||||||||||||||||||||||||    
T  758 tttccacaacatcttctcttcttatattaagagagat 722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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