View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8336_low_7 (Length: 254)
Name: NF8336_low_7
Description: NF8336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8336_low_7 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 18 - 254
Target Start/End: Original strand, 11017283 - 11017519
Alignment:
| Q |
18 |
tgaatactatgatataaatgcagggaagagttcatttatgtggcttggtccaagaccaagggtattcataatggaaccagacaaaatcaaagaaatgact |
117 |
Q |
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| T |
11017283 |
tgaatactatgatataaatgcagggaagagttcatttatgtggcttggtccaagaccaagggtattcataatggaaccagacaaaatcaaagaaatgact |
11017382 |
T |
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| Q |
118 |
actaaggtttatgattttcaaaaacctgacacaagtccacttttcaagcttctagcatcaggctttgcaaattatgatggagacaaatgggccaaacaca |
217 |
Q |
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| T |
11017383 |
actaaggtttatgattttcaaaaacctgacacaagtccacttttcaagcttctagcatcaggctttgcaaattatgatggagacaaatgggccaaacaca |
11017482 |
T |
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| Q |
218 |
gaaaaattgtcagcccagcattcaatgttgagaaaat |
254 |
Q |
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| T |
11017483 |
gaaaaattgttagcccagcattcaatgttgagaaaat |
11017519 |
T |
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