View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8337_low_1 (Length: 424)
Name: NF8337_low_1
Description: NF8337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8337_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 288; Significance: 1e-161; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 16 - 390
Target Start/End: Complemental strand, 25488386 - 25488014
Alignment:
| Q |
16 |
acttgcacatcgatccatgtcaagatattggagcattactagtccactgaaattaggagttttttcaagttttgtacaatccgagagacacaaaactctt |
115 |
Q |
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| T |
25488386 |
acttgcacatcgatccatgtcaagatattggagcattactagtccactgaaatcagaagtgtattcaagttttgtacaatccgagagacacaaaactttt |
25488287 |
T |
|
| Q |
116 |
agtgactttaataatggtgtactgccaaaatcaaggctcactaaactaacacacctctgaaaactcaagaatacaagtccagtaagaagtccaattgatg |
215 |
Q |
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| T |
25488286 |
agtgactttaataatggtcgacggccaaaattaaggctcactaaactagcgcatctctgaaaactcaagaatacaagttcagtaagaagtccaattgatg |
25488187 |
T |
|
| Q |
216 |
gatccacatgcgataagtttatgcatcccgtaaaatctagccgctcaaggtttaggattcccttaaaacatggagtcatcttcagatttattgagttgct |
315 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |
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| T |
25488186 |
gatccacatgcgataagtttatgcatcctgtaaaatctagccgctcaaggtttaggattccctcaaaacatggagtcatcttcagattttttgagttgct |
25488087 |
T |
|
| Q |
316 |
caaatccattcttctcaaattggggagatactgtggagagagagtattaagcacaaatatgttagtattgttgta |
390 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||||||| || || |||||||||||||||||||||||| |
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| T |
25488086 |
caaatccatccttctcaaattggggagatactgtggagagaga--atcaaccacaaatatgttagtattgttgta |
25488014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 14 - 390
Target Start/End: Original strand, 25475487 - 25475861
Alignment:
| Q |
14 |
aaacttgcacatcgatccatgtcaagatattggagcattact-agtccactgaaattaggagttttttcaagttttgtacaatccgagagacacaaaact |
112 |
Q |
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| T |
25475487 |
aaacttgcacatcggtccatatcaagatactgtagaaa-actcaatccactgaaatccggtgtgttttccagttgtgtgcaatcagagagacgcaaaact |
25475585 |
T |
|
| Q |
113 |
cttagtgactttaataatggtgtactgccaaaatcaaggctcactaaactaacacacctctgaaaactcaagaatacaagtccagtaagaagtccaattg |
212 |
Q |
| |
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|||| ||| |||| || || | | |||||||||||||| |||| |||| ||| |||| |||||||||||||||||| | |||||||||||||||| |
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| T |
25475586 |
tttagagaccataattgtgctgaatttccaaaatcaaggctaactagactactacagttctgcaaactcaagaatacaagttccgtaagaagtccaattg |
25475685 |
T |
|
| Q |
213 |
atggatccacatgcgataagtttatgcatcccgtaaaatctagccgctcaaggtttaggattcccttaaaacatggagtcatcttcagatttattgagtt |
312 |
Q |
| |
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||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||| | ||||||||||||||||||||||||| | ||||| |
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| T |
25475686 |
atggatccacatgcgataagtttatgcatcctgtaagatctagccgctccaggtttaggattccatcaaaacatggagtcatcttcagatttttagagtt |
25475785 |
T |
|
| Q |
313 |
gctcaaatccattcttctcaaattggggagatactgtggagagagagtattaagcacaaatatgttagtattgttgta |
390 |
Q |
| |
|
||| | |||||| ||| ||||||||||||||| |||| ||||||| || || | | ||||||||| |||||||||| |
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|
| T |
25475786 |
gctaagatccatccttttcaaattggggagatgctgtcaagagaga--atcaaccgccaatatgttactattgttgta |
25475861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 18 - 387
Target Start/End: Original strand, 25432984 - 25433352
Alignment:
| Q |
18 |
ttgcacatcgatccatgtcaagatattggagcattactagtccactgaaattaggagttttttcaagttttgtacaatccgagagacacaaaactcttag |
117 |
Q |
| |
|
||||||||| |||||| |||||||||||||| ||| || |||||| |||| |||||| |||||||||||||| ||||| ||||||||||||||| |||| |
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| T |
25432984 |
ttgcacatcaatccatatcaagatattggagaattgataatccactaaaatcaggagtattttcaagttttgtgcaatcagagagacacaaaacttttag |
25433083 |
T |
|
| Q |
118 |
tgactttaataatggtgtactgccaaaatcaaggctcactaaactaacacacctctgaaaactcaagaatacaagtccagtaagaagtccaattgatgga |
217 |
Q |
| |
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||| |||| | || | | |||||||||||| | |||| | | ||| | || |||||||||||||||||| ||||||||||||||||||| | |
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| T |
25433084 |
agaccataatgtagctgcatttccaaaatcaaggttaactagatttctacagttttgcaaactcaagaatacaagttttgtaagaagtccaattgatgaa |
25433183 |
T |
|
| Q |
218 |
tccacatgcgataagtttatgcatcccgtaaaatctagccgctcaaggtttaggattcccttaaaacatggagtcatcttcagatttattgagttgctca |
317 |
Q |
| |
|
||||| || ||||||||||||||||| | || |||||| |||||||| ||||||| ||||| ||||||||||||||||||||||||| | |||||||||| |
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|
| T |
25433184 |
tccacttgtgataagtttatgcatcctgaaagatctagtcgctcaagatttaggactccctcaaaacatggagtcatcttcagatttttagagttgctca |
25433283 |
T |
|
| Q |
318 |
aatccattcttctcaaattggggagatactgtggagagagagtattaagcacaaatatgttagtattgtt |
387 |
Q |
| |
|
|||||| ||| ||||||||||||||| ||||| || | ||| || || ||||||||||||||||||||| |
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| T |
25433284 |
gatccatccttttcaaattggggagatgctgtgaagtg-gagaatcaaccacaaatatgttagtattgtt |
25433352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 14 - 273
Target Start/End: Complemental strand, 25448463 - 25448204
Alignment:
| Q |
14 |
aaacttgcacatcgatccatgtcaagatattggagcattactagtccactgaaattaggagttttttcaagttttgtacaatccgagagacacaaaactc |
113 |
Q |
| |
|
|||||||||||||||||||| |||| ||| || || |||| |||||| |||| || || ||| |||||||||| ||||| ||||||| |||||||| |
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|
| T |
25448463 |
aaacttgcacatcgatccatatcaacatactgaagaattaacgttccacttaaatctggtgtgtttccaagttttgtgcaatcagagagacgcaaaactc |
25448364 |
T |
|
| Q |
114 |
ttagtgactttaataatggtgtactgccaaaatcaaggctcactaaactaacacacctctgaaaactcaagaatacaagtccagtaagaagtccaattga |
213 |
Q |
| |
|
|||||||| |||||| ||||| | |||||||| ||||||||||||||||| ||| | || |||||||||||||||||| | ||||||||||||||| |
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| T |
25448363 |
ttagtgaccttaatactggtgcattgccaaaaacaaggctcactaaactagtacagttttgcaaactcaagaatacaagttcttcaagaagtccaattga |
25448264 |
T |
|
| Q |
214 |
tggatccacatgcgataagtttatgcatcccgtaaaatctagccgctcaaggtttaggat |
273 |
Q |
| |
|
|||||||||||| |||||||| |||||||| |||| ||||||||||||||| |||||||| |
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|
| T |
25448263 |
tggatccacatgtgataagttaatgcatcctgtaagatctagccgctcaagatttaggat |
25448204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 198 - 335
Target Start/End: Complemental strand, 25641035 - 25640898
Alignment:
| Q |
198 |
taagaagtccaattgatggatccacatgcgataagtttatgcatcccgtaaaatctagccgctcaaggtttaggattcccttaaaacatggagtcatctt |
297 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||| |||||||||| | ||||||||| ||||| || ||| | || || ||||| ||||| |||||||| |
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|
| T |
25641035 |
taagaagtccaattgatggatgcacatgccataagcttatgcatccagcaaaatctagtcgctcgagattttgcatccctttaaagcatggggtcatctt |
25640936 |
T |
|
| Q |
298 |
cagatttattgagttgctcaaatccattcttctcaaat |
335 |
Q |
| |
|
|||||| | ||||||||||||||||| ||| |||||| |
|
|
| T |
25640935 |
gagatttttagagttgctcaaatccatccttttcaaat |
25640898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 14 - 205
Target Start/End: Original strand, 25429622 - 25429814
Alignment:
| Q |
14 |
aaacttgcacatcgat-ccatgtcaagatattggagcattactagtccactgaaattaggagttttttcaagttttgtacaatccgagagacacaaaact |
112 |
Q |
| |
|
|||||||||||||||| |||| |||||||| || || |||| ||||||||||| | |||| |||||||||||| ||||||||||||||| | |||| |
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|
| T |
25429622 |
aaacttgcacatcgattccatatcaagatactgaagaattaacgttccactgaaatcaagagtgttttcaagttttatacaatccgagagacgaagaact |
25429721 |
T |
|
| Q |
113 |
cttagtgactttaataatggtgtactgccaaaatcaaggctcactaaactaacacacctctgaaaactcaagaatacaagtccagtaagaagt |
205 |
Q |
| |
|
|| || ||| ||||| |||| | || ||||||||| | |||| |||| |||| | || ||||||| |||||||||| | ||||||||| |
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|
| T |
25429722 |
ctaagagaccttaatctcggtggatcgctgaaatcaaggttgactagactagcacaattttgcaaactcatgaatacaagttctgtaagaagt |
25429814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 171 - 334
Target Start/End: Original strand, 496903 - 497066
Alignment:
| Q |
171 |
tctgaaaactcaagaatacaagtccagtaagaagtccaattgatggatccacatgcgataagtttatgcatcccgtaaaatctagccgctcaaggtttag |
270 |
Q |
| |
|
|||| |||||||||||||||||| | ||||||||||||| |||||||| ||| ||| | |||||||||||||| |||||||||| ||||||||| ||| | |
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|
| T |
496903 |
tctgcaaactcaagaatacaagttctgtaagaagtccaactgatggatgcacctgcaacaagtttatgcatcctgtaaaatctatccgctcaagattttg |
497002 |
T |
|
| Q |
271 |
gattcccttaaaacatggagtcatcttcagatttattgagttgctcaaatccattcttctcaaa |
334 |
Q |
| |
|
||| || | ||||| |||||| || | |||||| | |||||||||| ||||| ||| ||||| |
|
|
| T |
497003 |
gatcccttcaaaacttggagttgtcctgagatttttcgagttgctcaggtccatccttttcaaa |
497066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 176 - 264
Target Start/End: Original strand, 35042665 - 35042753
Alignment:
| Q |
176 |
aaactcaagaatacaagtccagtaagaagtccaattgatggatccacatgcgataagtttatgcatcccgtaaaatctagccgctcaag |
264 |
Q |
| |
|
||||| ||||| |||||| | |||||| |||||||||||| || ||||| ||||||| ||||||||||||||||||| |||||||| |
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|
| T |
35042665 |
aaacttaagaaaacaagttctgtaagatgtccaattgatgaatggacatgtattaagtttgtgcatcccgtaaaatctagtcgctcaag |
35042753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 176 - 264
Target Start/End: Original strand, 35102745 - 35102833
Alignment:
| Q |
176 |
aaactcaagaatacaagtccagtaagaagtccaattgatggatccacatgcgataagtttatgcatcccgtaaaatctagccgctcaag |
264 |
Q |
| |
|
||||| ||||| |||||| | |||||| ||||||||||||||| || || ||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
35102745 |
aaacttaagaaaacaagttctgtaagatgtccaattgatggatgaacctgtattaagtttgtgcatccggtaaaatctagccgctcaag |
35102833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 176 - 263
Target Start/End: Original strand, 35051861 - 35051948
Alignment:
| Q |
176 |
aaactcaagaatacaagtccagtaagaagtccaattgatggatccacatgcgataagtttatgcatcccgtaaaatctagccgctcaa |
263 |
Q |
| |
|
||||||||||| ||||| | | ||||||||||| ||||||| |||| ||| | |||||||||||| ||||||||||||| ||||| |
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|
| T |
35051861 |
aaactcaagaaagcaagttcttttagaagtccaatggatggatggacatacgacaggtttatgcatcctgtaaaatctagcctctcaa |
35051948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 200 - 264
Target Start/End: Original strand, 35175203 - 35175267
Alignment:
| Q |
200 |
agaagtccaattgatggatccacatgcgataagtttatgcatcccgtaaaatctagccgctcaag |
264 |
Q |
| |
|
||||||||||| || |||| |||| ||||| |||||||||||| ||||||||||| || ||||| |
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|
| T |
35175203 |
agaagtccaatggacggatggacatacgataggtttatgcatcctgtaaaatctagacgttcaag |
35175267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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