View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8337_low_3 (Length: 238)

Name: NF8337_low_3
Description: NF8337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8337_low_3
NF8337_low_3
[»] chr4 (4 HSPs)
chr4 (2-222)||(12712417-12712637)
chr4 (25-166)||(11476212-11476351)
chr4 (136-179)||(24474461-24474504)
chr4 (74-166)||(18448556-18448647)
[»] chr6 (6 HSPs)
chr6 (2-198)||(12332096-12332291)
chr6 (2-110)||(20891443-20891551)
chr6 (135-175)||(22441894-22441934)
chr6 (135-179)||(13123520-13123564)
chr6 (5-54)||(30755186-30755235)
chr6 (135-179)||(23846578-23846622)
[»] scaffold0171 (1 HSPs)
scaffold0171 (4-189)||(2483-2667)
[»] chr8 (5 HSPs)
chr8 (8-196)||(16722983-16723170)
chr8 (136-187)||(15061630-15061682)
chr8 (67-166)||(15663232-15663330)
chr8 (72-166)||(15551166-15551258)
chr8 (98-179)||(24820566-24820647)
[»] scaffold0113 (1 HSPs)
scaffold0113 (2-179)||(24498-24673)
[»] chr3 (3 HSPs)
chr3 (5-92)||(14148320-14148407)
chr3 (97-196)||(2278076-2278175)
chr3 (2-161)||(19800227-19800383)
[»] scaffold0035 (1 HSPs)
scaffold0035 (2-161)||(71586-71743)
[»] chr7 (7 HSPs)
chr7 (2-86)||(12389968-12390051)
chr7 (2-83)||(19432698-19432778)
chr7 (2-86)||(12396143-12396226)
chr7 (69-198)||(5712888-5713016)
chr7 (135-176)||(17909846-17909887)
chr7 (7-84)||(18000120-18000196)
chr7 (135-187)||(45341015-45341068)
[»] chr2 (2 HSPs)
chr2 (120-179)||(24725939-24725997)
chr2 (135-172)||(22627568-22627605)
[»] scaffold0100 (1 HSPs)
scaffold0100 (143-187)||(37761-37806)
[»] scaffold2097 (1 HSPs)
scaffold2097 (2-77)||(771-845)
[»] scaffold0263 (1 HSPs)
scaffold0263 (136-190)||(20360-20415)
[»] scaffold0174 (1 HSPs)
scaffold0174 (144-179)||(23971-24006)
[»] scaffold0233 (1 HSPs)
scaffold0233 (2-86)||(19711-19794)
[»] scaffold0338 (1 HSPs)
scaffold0338 (135-175)||(18989-19028)
[»] chr5 (1 HSPs)
chr5 (135-179)||(26057844-26057888)


Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 2 - 222
Target Start/End: Complemental strand, 12712637 - 12712417
Alignment:
Q  2 ttgagattttattatgcatgtacttgaggattattacatgttgatgaaatatttatttatgatgatttttcgctgcgagttttataaaaactgtgtttat 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||    
T  12712637 ttgagattttattatgcatgtacttgaggattattacatgttgatgaaatatttatgtatgatgatttttcgttgcgagttttataaaaactgtgtatat 12712538  T
Q  102 gcatgttttcaaaaattgatgacgtgacattcttaaactcttttgaataattgatttatttgcatgatttattgcattggggtttaaggatgttataata 201  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| ||||||||||||||||||||| ||||    
T  12712537 gcatgttttgaaaaattgatgacgtgacattcttaaactcttttgaataattgatttatttaaatgatttattacattggggtttaaggatgttacaata 12712438  T
Q  202 tgcatgtttgaataaactaac 222  Q
    |||||||||||||||||||||    
T  12712437 tgcatgtttgaataaactaac 12712417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 25 - 166
Target Start/End: Complemental strand, 11476351 - 11476212
Alignment:
Q  25 ttgaggattattacatgttgatgaaatatttatttatgatgatttttcgctgcgagttttataaaaactgtgtttatgcatgttttca-aaaattgatga 123  Q
    |||||||| ||||||||||  ||| ||||||||  ||| || ||||  |||||||||||||| ||||| |  || ||||||||||| | |||| ||||||    
T  11476351 ttgaggatgattacatgtttctgagatatttatg-atgttgtttttctgctgcgagttttatgaaaaccgaatt-atgcatgttttgagaaaaatgatga 11476254  T
Q  124 cgtgacattcttaaactcttttgaataattgatttatttgcat 166  Q
    |||||||| ||| ||||||||||| ||  ||||||||||||||    
T  11476253 cgtgacat-cttgaactcttttgattagatgatttatttgcat 11476212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 179
Target Start/End: Original strand, 24474461 - 24474504
Alignment:
Q  136 aaactcttttgaataattgatttatttgcatgatttattgcatt 179  Q
    |||| |||| |||||||||||||||||| |||||||||||||||    
T  24474461 aaaccctttcgaataattgatttatttgtatgatttattgcatt 24474504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 166
Target Start/End: Complemental strand, 18448647 - 18448556
Alignment:
Q  74 ctgcgagttttataaaaactgtgtttatgcatgttttcaa-aaattgatgacgtgacattcttaaactcttttgaataattgatttatttgcat 166  Q
    ||||||||||||| ||||||| | |||||||||||||  | ||| |||||||||  ||| ||| ||||||||||| ||| ||||||||||||||    
T  18448647 ctgcgagttttatgaaaactg-gattatgcatgtttttgagaaaatgatgacgtagcat-cttgaactcttttgattaaatgatttatttgcat 18448556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 90; Significance: 1e-43; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 2 - 198
Target Start/End: Original strand, 12332096 - 12332291
Alignment:
Q  2 ttgagattttattatgcatgtacttgaggattattacatgttgatgaaatatttatttatgatgatttttcgctgcgagttttataaaaactgtgtttat 101  Q
    |||||||| |||||| ||||||| |||||||||||||||||||||||  ||||||| ||||||||||||||||| |||||||||| ||||| |  |||||    
T  12332096 ttgagattctattattcatgtacctgaggattattacatgttgatgagttatttatgtatgatgatttttcgctacgagttttatgaaaacag-atttat 12332194  T
Q  102 gcatgttttcaaaaattgatgacgtgacattcttaaactcttttgaataattgatttatttgcatgatttattgca-ttggggtttaaggatgttata 198  Q
    ||||||||| | ||| || ||| || ||| |||| ||||||||||| ||||||||||| ||||||||||||||||| |||||||| |||| |||||||    
T  12332195 gcatgttttgagaaaatgttgatgtaaca-tcttgaactcttttgattaattgatttaattgcatgatttattgcatttggggttcaagggtgttata 12332291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 2 - 110
Target Start/End: Complemental strand, 20891551 - 20891443
Alignment:
Q  2 ttgagattttattatgcatgtacttgaggattattacatgttgatgaaatatttatttatgatgatttttcgctgcgagttttataaaaactgtgtttat 101  Q
    |||||||| |||||| |||||||||||| ||||||||||||||| || |||||||| ||||||| |||||||||| ||||||||||||||| || ||| |    
T  20891551 ttgagattgtattattcatgtacttgagaattattacatgttgacgagatatttatgtatgatgttttttcgctgtgagttttataaaaaccgtatttgt 20891452  T
Q  102 gcatgtttt 110  Q
    |||||||||    
T  20891451 gcatgtttt 20891443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 135 - 175
Target Start/End: Complemental strand, 22441934 - 22441894
Alignment:
Q  135 taaactcttttgaataattgatttatttgcatgatttattg 175  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  22441934 taaactcttttgaataattgatttaattgcatgatttattg 22441894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 179
Target Start/End: Original strand, 13123520 - 13123564
Alignment:
Q  135 taaactcttttgaataattgatttatttgcatgatttattgcatt 179  Q
    |||| ||||| |||||||||||||||||| |||||||||||||||    
T  13123520 taaattctttcgaataattgatttatttgaatgatttattgcatt 13123564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 54
Target Start/End: Original strand, 30755186 - 30755235
Alignment:
Q  5 agattttattatgcatgtacttgaggattattacatgttgatgaaatatt 54  Q
    |||||||||||  |||||  |||||||||||||||||||||||| |||||    
T  30755186 agattttattactcatgtgtttgaggattattacatgttgatgagatatt 30755235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 179
Target Start/End: Original strand, 23846578 - 23846622
Alignment:
Q  135 taaactcttttgaataattgatttatttgcatgatttattgcatt 179  Q
    |||||||||| ||| ||| |||||||||||| |||||||||||||    
T  23846578 taaactctttcgaacaatagatttatttgcaagatttattgcatt 23846622  T

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Target: scaffold0171 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 4 - 189
Target Start/End: Complemental strand, 2667 - 2483
Alignment:
Q  4 gagattttattatgcatgtacttgaggattattacatgttgatgaaatatttatttatgatgatttttcgctgcgagttttataaaaactgtgtttatgc 103  Q
    ||||||||||||| |||||||||||||||||||| ||||||   | ||| || | |||||||||||| || |||||||||||| |||||||| |||||||    
T  2667 gagattttattattcatgtacttgaggattattagatgttgccaagataatt-tgtatgatgattttccgatgcgagttttatgaaaactgtatttatgc 2569  T
Q  104 atgttttcaaaaattgatgacgtgacattcttaaactcttttgaataattgatttatttgcatgatttattgcatt-ggggtttaag 189  Q
    ||||| | ||||| ||||| | ||||| |||||||||||||| ||||||||| ||||||||||| ||||||||||| ||||||||||    
T  2568 atgttgtgaaaaaatgatggcatgaca-tcttaaactcttttaaataattgaattatttgcatgttttattgcattcggggtttaag 2483  T

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Target: chr8 (Bit Score: 67; Significance: 7e-30; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 8 - 196
Target Start/End: Complemental strand, 16723170 - 16722983
Alignment:
Q  8 ttttattatgcatgtactt-gaggattattacatgttgatgaaatatttatttatgatgatttttcgctgcgagttttataaaaactgtgtttatgcatg 106  Q
    ||||| ||| ||||||||| |||||| ||||||||||| ||| ||||||||  ||| || |||| ||||||||||||||| ||||| || ||||||||||    
T  16723170 ttttactattcatgtactttgaggatgattacatgttgctgagatatttatg-atgttgtttttccgctgcgagttttatgaaaaccgtatttatgcatg 16723072  T
Q  107 ttttcaaaaattgatgacgtgacattcttaaactcttttgaataattgatttatttgcatgatttattg-cattggggtttaaggatgtta 196  Q
    |||| | ||| || ||||||| || |||||||||| ||||||||| |||||||||||||| ||||||||  |||||||||||||| |||||    
T  16723071 ttttgagaaaatgttgacgtggca-tcttaaactc-tttgaataaatgatttatttgcataatttattgtgattggggtttaagggtgtta 16722983  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 136 - 187
Target Start/End: Complemental strand, 15061682 - 15061630
Alignment:
Q  136 aaactcttttgaataattgatttatttgcatgatttattgcatt-ggggttta 187  Q
    ||||||||||||||||||||||||||| |||||||||||||||| ||||||||    
T  15061682 aaactcttttgaataattgatttatttacatgatttattgcattcggggttta 15061630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 67 - 166
Target Start/End: Original strand, 15663232 - 15663330
Alignment:
Q  67 tttttcgctgcgagttttataaaaactgtgtttatgcatg-ttttcaaaaattgatgacgtgacattcttaaactcttttgaataattgatttatttgca 165  Q
    |||| |||||||||||||||||||||||   ||||||||| |||| | ||| ||||||||| ||| |||||||||||||||| |||  ||||||||||||    
T  15663232 ttttccgctgcgagttttataaaaactg-aattatgcatgtttttgagaaaatgatgacgtaaca-tcttaaactcttttgattaaacgatttatttgca 15663329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 72 - 166
Target Start/End: Original strand, 15551166 - 15551258
Alignment:
Q  72 cgctgcgagttttataaaaactgtgtttatgcatgttttcaaaaattgatgacgtgacattcttaaactcttttgaataattgatttatttgcat 166  Q
    |||| |||||||||| ||||| | | ||||||||||||| | ||| ||||||||| |||| ||| ||||||||||| ||| ||||||||||||||    
T  15551166 cgctacgagttttatgaaaacag-gattatgcatgttttgagaaaatgatgacgtaacat-cttgaactcttttgattaaatgatttatttgcat 15551258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 98 - 179
Target Start/End: Original strand, 24820566 - 24820647
Alignment:
Q  98 ttatgcatgttttcaa-aaattgatgacgtgacattcttaaactcttttgaataattgatttatttgcatgatttattgcatt 179  Q
    |||||||||||||  | ||| |||||||||| ||| ||||| || ||| |||||| |||||||||||||||||||||||||||    
T  24820566 ttatgcatgttttttagaaaatgatgacgtgtcat-cttaatctatttcgaataaatgatttatttgcatgatttattgcatt 24820647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 2 - 179
Target Start/End: Original strand, 24498 - 24673
Alignment:
Q  2 ttgagattttattatgcatgtacttgaggattattacatgttgatgaaatatttatttatgatgatttttcgctgcgagttttataaaaactgtgtttat 101  Q
    |||||||| |||||| |||||||||||||||||||| |||||| |||  ||||||| |||| ||||||| | ||||||||||| | |||||||  |||||    
T  24498 ttgagattctattattcatgtacttgaggattattatatgttgttgagttatttatgtatggtgattttccactgcgagttttctgaaaactg-atttat 24596  T
Q  102 gcatgttttca-aaaattgatgacgtgacattcttaaactcttttgaataattgatttatttgcatgatttattgcatt 179  Q
    ||||||||| | | ||  || || |||||| |||| |||||||  | |||||||| |||||||||||||||||||||||    
T  24597 gcatgttttgagataacaga-gatgtgaca-tcttgaactcttgggtataattgacttatttgcatgatttattgcatt 24673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 5 - 92
Target Start/End: Original strand, 14148320 - 14148407
Alignment:
Q  5 agattttattatgcatgtacttgaggattattacatgttgatgaaatatttatttatgatgatttttcgctgcgagttttataaaaac 92  Q
    |||||||||||| ||||||||| ||||||||||||||||||||| |||||||| ||||||| |||| ||||||  ||||||| |||||    
T  14148320 agattttattattcatgtacttcaggattattacatgttgatgagatatttatgtatgatgtttttccgctgcatgttttatgaaaac 14148407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 97 - 196
Target Start/End: Complemental strand, 2278175 - 2278076
Alignment:
Q  97 tttatgcatgttttcaaaaattgatgacgtgacattcttaaactcttttgaataattgatttatttgcatgatttattgcatt-ggggtttaaggatgtt 195  Q
    |||||||||| |||  | || ||| |||||||||| |||||||||| |||| ||||||| ||||||||||| ||||||||||| ||||||||||| ||||    
T  2278175 tttatgcatgatttggagaaatgacgacgtgacat-cttaaactctgttgattaattgaattatttgcatgttttattgcattcggggtttaagggtgtt 2278077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 2 - 161
Target Start/End: Complemental strand, 19800383 - 19800227
Alignment:
Q  2 ttgagattttattatgcatgtacttgaggattattacatgttgatgaaatatttatttatgatgattttt-cgctgcgagttttat-aaaaactgtgttt 99  Q
    ||||||| || |||| ||||||||||||||| ||||||||||| ||| |||||||| | || | |||||| |||||| |||||||| ||||||   | ||    
T  19800383 ttgagatatttttattcatgtacttgaggatgattacatgttgctgagatatttatgt-tgttaatttttccgctgcaagttttatgaaaaac--agatt 19800287  T
Q  100 atgcatgttttcaaaaattgatgacgtgacattcttaaactcttttgaataattgatttatt 161  Q
    ||||||||||| | ||| ||||||||||||||   ||||||||||||||  | |||||||||    
T  19800286 atgcatgttttgagaaaatgatgacgtgacat--ctaaactcttttgaagtaatgatttatt 19800227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 2 - 161
Target Start/End: Original strand, 71586 - 71743
Alignment:
Q  2 ttgagattttattatgcatgtacttgaggattattacatgttgatgaaatatttatttatgatgatttttcgctgcgag-ttttataaaaactgtgttta 100  Q
    ||||||||||||||| ||||||||||| ||| ||||||||||| | |||||||||| ||||| |||||| |||| | || |||||| |||| |  |||||    
T  71586 ttgagattttattattcatgtacttgaagatgattacatgttgtttaaatatttatgtatgaagattttgcgctacaagtttttatgaaaa-tcagttta 71684  T
Q  101 tgcatgttttcaaaaattgatgacgtgacattcttaaactcttttgaataattgatttatt 161  Q
    |||||||||| | ||| | |||||||   ||   |||||||||||||||||||||||||||    
T  71685 tgcatgttttgagaaaataatgacgtagtat--ctaaactcttttgaataattgatttatt 71743  T

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Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 2 - 86
Target Start/End: Original strand, 12389968 - 12390051
Alignment:
Q  2 ttgagattttattatgcatgtacttgaggattattacatgttgatgaaatatttatttatgatgatttttcgctgcgagttttat 86  Q
    ||||||||||||||  |||||| |||||||||||||||||||||||| |||||| | |||| ||||||| |||||||||||||||    
T  12389968 ttgagattttattactcatgtatttgaggattattacatgttgatgagatattt-tgtatgttgattttccgctgcgagttttat 12390051  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 83
Target Start/End: Original strand, 19432698 - 19432778
Alignment:
Q  2 ttgagattttattatgcatgtacttgaggattattacatgttgatgaaatatttatttatgatgatttttcgctgcgagttt 83  Q
    ||||||||||||||  |||||| |||| ||| ||||||||||||||| |||||||  |||||||||||| |||| |||||||    
T  19432698 ttgagattttattactcatgtagttgacgat-attacatgttgatgagatatttacgtatgatgattttccgctacgagttt 19432778  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 86
Target Start/End: Original strand, 12396143 - 12396226
Alignment:
Q  2 ttgagattttattatgcatgtacttgaggattattacatgttgatgaaatatttatttatgatgatttttcgctgcgagttttat 86  Q
    ||||||||||||||  |||||| || ||||||||||||||||||||| |||| | | |||| | ||||| |||||||||||||||    
T  12396143 ttgagattttattactcatgtatttaaggattattacatgttgatgagatatgt-tgtatgtttattttccgctgcgagttttat 12396226  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 69 - 198
Target Start/End: Original strand, 5712888 - 5713016
Alignment:
Q  69 tttcgctgcgagttttataaaaactgtgtttatgcatgttttcaaaaattgatgacgtgacattcttaaactcttttgaataattgatttatttgcatga 168  Q
    ||||||| |||||||||| |||||||  || ||||||||||| | ||| ||| ||| | |||| ||| || ||||||||||||||||||||||||||| |    
T  5712888 tttcgctacgagttttatgaaaactgaatt-atgcatgttttgagaaaatgaagacataacat-cttgaattcttttgaataattgatttatttgcatta 5712985  T
Q  169 tttattgcat-tggggtttaaggatgttata 198  Q
      |||||| | ||||||| |||| |||||||    
T  5712986 aatattgcttgtggggttcaagggtgttata 5713016  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 135 - 176
Target Start/End: Complemental strand, 17909887 - 17909846
Alignment:
Q  135 taaactcttttgaataattgatttatttgcatgatttattgc 176  Q
    ||||||||||||||||||||  ||||||||||||||||||||    
T  17909887 taaactcttttgaataattgtattatttgcatgatttattgc 17909846  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 84
Target Start/End: Original strand, 18000120 - 18000196
Alignment:
Q  7 attttattatgcatgtacttgaggattattacatgttgatgaaatatttatttatgatgatttttcgctgcgagtttt 84  Q
    |||||||| | |||||| ||||||||||||| |||||| ||| |||||| | ||||||||| || |||| ||||||||    
T  18000120 attttattgttcatgta-ttgaggattattatatgttgttgagatatttttgtatgatgatgttccgctacgagtttt 18000196  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 187
Target Start/End: Complemental strand, 45341068 - 45341015
Alignment:
Q  135 taaactcttttgaataattgatttatttgcatgatttattgca-ttggggttta 187  Q
    ||||||| ||||||||| | ||||||||||||||||||||| | ||||||||||    
T  45341068 taaactcgtttgaataaataatttatttgcatgatttattgtatttggggttta 45341015  T

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Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 120 - 179
Target Start/End: Complemental strand, 24725997 - 24725939
Alignment:
Q  120 atgacgtgacattcttaaactcttttgaataattgatttatttgcatgatttattgcatt 179  Q
    |||||||||| ||||||||||||| |||||||  ||||||||||||||||||||||||||    
T  24725997 atgacgtgac-ttcttaaactcttctgaataaaagatttatttgcatgatttattgcatt 24725939  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 172
Target Start/End: Complemental strand, 22627605 - 22627568
Alignment:
Q  135 taaactcttttgaataattgatttatttgcatgattta 172  Q
    ||||||||||||||||||||  ||||||||||||||||    
T  22627605 taaactcttttgaataattgtattatttgcatgattta 22627568  T

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Target: scaffold0100 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 187
Target Start/End: Complemental strand, 37806 - 37761
Alignment:
Q  143 tttgaataattgatttatttgcatgatttattgcatt-ggggttta 187  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||    
T  37806 tttgaataattgatttatttgcatgatttattgcattcggggttta 37761  T

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Target: scaffold2097 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold2097
Description:

Target: scaffold2097; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 77
Target Start/End: Original strand, 771 - 845
Alignment:
Q  2 ttgagattttattatgcatgtacttgaggattattacatgttgatgaaatatttatttatgatgatttttcgctgc 77  Q
    |||||||||||| || |||||| |||||||||||||| ||||||||||| ||| |  |||||||||||| ||||||    
T  771 ttgagattttat-attcatgtatttgaggattattacttgttgatgaaacattcaagtatgatgattttccgctgc 845  T

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Target: scaffold0263 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 190
Target Start/End: Original strand, 20360 - 20415
Alignment:
Q  136 aaactcttttgaataattgattta-tttgcatgatttattgcattggggtttaagg 190  Q
    |||||||||||||||| ||||||| ||||||| | |||||||||||||||||||||    
T  20360 aaactcttttgaataaatgatttattttgcataaattattgcattggggtttaagg 20415  T

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Target: scaffold0174 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 179
Target Start/End: Complemental strand, 24006 - 23971
Alignment:
Q  144 ttgaataattgatttatttgcatgatttattgcatt 179  Q
    ||||||||||||||||||||||||||||||||||||    
T  24006 ttgaataattgatttatttgcatgatttattgcatt 23971  T

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Target: scaffold0233 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0233
Description:

Target: scaffold0233; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 86
Target Start/End: Complemental strand, 19794 - 19711
Alignment:
Q  2 ttgagattttattatgcatgtacttgaggattattacatgttgatgaaatatttatttatgatgatttttcgctgcgagttttat 86  Q
    |||||||||||| ||  ||||| |||||||||||||| |||| |||| | ||| || |||||| ||||| |||||||||||||||    
T  19794 ttgagattttat-attaatgtatttgaggattattacttgtttatgagacattcatgtatgataattttccgctgcgagttttat 19711  T

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Target: scaffold0338 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0338
Description:

Target: scaffold0338; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 175
Target Start/End: Original strand, 18989 - 19028
Alignment:
Q  135 taaactcttttgaataattgatttatttgcatgatttattg 175  Q
    |||||||||| ||||||||||||||||||||| ||||||||    
T  18989 taaactctttcgaataattgatttatttgcat-atttattg 19028  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 179
Target Start/End: Complemental strand, 26057888 - 26057844
Alignment:
Q  135 taaactcttttgaataattgatttatttgcatgatttattgcatt 179  Q
    ||||||||||||||| ||||| ||||| |||||||||||| ||||    
T  26057888 taaactcttttgaatgattgacttattggcatgatttattacatt 26057844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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