View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8339_high_1 (Length: 587)
Name: NF8339_high_1
Description: NF8339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8339_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 275; Significance: 1e-153; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 279 - 569
Target Start/End: Complemental strand, 32902592 - 32902303
Alignment:
| Q |
279 |
aagagagagtgtgtgcgtgtgtataaacaagagaacacaaatgttagagagtgttgttgaatatttgtgaagtttattgaatagagtggtgactctatta |
378 |
Q |
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| T |
32902592 |
aagagagagtgtgtgcgtgtgtataaacaagagaacacaaatgttagagagtgttgttgaatatttgtgaagtttattgaatagagtggtgactctatta |
32902493 |
T |
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| Q |
379 |
tgaaggggaaaccagttctgcacccacaaaaaccccacgatgtagaaattggaatgcgcagaaacatgtgatgccaaattgaaagcataaatggaactca |
478 |
Q |
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| T |
32902492 |
tgaaggggaaaccagttctgcacccacaaaaaccc-acgatgtagaaattggaatgcgcagaaacatgtgatgccaaattgaaagcataaatggaactca |
32902394 |
T |
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| Q |
479 |
aaacacacaacaatggtatacaattttccgttcaaaatatggtatacgaatccagaacacagaaataaccaaagtcatgaattgaaatgaa |
569 |
Q |
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| T |
32902393 |
aaacatacaacaatggtatacaattttccgttcaaaatatggtatacgaatccagaacacagaaataaccaaactcatgaattgaaatgaa |
32902303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 105 - 172
Target Start/End: Complemental strand, 32902766 - 32902699
Alignment:
| Q |
105 |
ttttttcacaatttgaccaatatcccctaaaccatccattctcagttagaattgcagaataaaaggaa |
172 |
Q |
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| T |
32902766 |
ttttttcacaatttgaccaatatcccctaaaccatccattctctgttataattgcaaaataaaaggaa |
32902699 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 32903128 - 32903075
Alignment:
| Q |
1 |
taataaccacaacaatagtctattccaagttatatgtagaatgaacattcttat |
54 |
Q |
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| T |
32903128 |
taataaccacaacaatagtctattccaagttatatgtagaatgaacattcttat |
32903075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 395 - 494
Target Start/End: Complemental strand, 55679160 - 55679064
Alignment:
| Q |
395 |
tctgcacccacaaaaaccccacgatgtagaaattggaatgcgcagaaacatgtgatgccaaattgaaagcataaatggaactcaaaacacacaacaatgg |
494 |
Q |
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| T |
55679160 |
tctgcacccacaaaa--cccacgatgtagaaattggaaaacgcaggaacatg-cataccaaattgaaagcataaaccaaatgcaaaacacacaacaatgg |
55679064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 399 - 494
Target Start/End: Complemental strand, 50743980 - 50743888
Alignment:
| Q |
399 |
cacccacaaaaaccccacgatgtagaaattggaatgcgcagaaacatgtgatgccaaattgaaagcataaatggaactcaaaacacacaacaatgg |
494 |
Q |
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| T |
50743980 |
cacccacaaaa--cccacgatgtagaaattggaaaacgcaggaacatgc-atacaatattgaaagcataaatcaaacgcaaaacccacaacaatgg |
50743888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 335 - 389
Target Start/End: Original strand, 29075636 - 29075690
Alignment:
| Q |
335 |
ttgaatatttgtgaagtttattgaatagagtggtgactctattatgaaggggaaa |
389 |
Q |
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| T |
29075636 |
ttgaatatttgtaaagtttagtgaatagagtagtgactatattgtgaaggggaaa |
29075690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 335 - 390
Target Start/End: Original strand, 7863396 - 7863451
Alignment:
| Q |
335 |
ttgaatatttgtgaagtttattgaatagagtggtgactctattatgaaggggaaac |
390 |
Q |
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| T |
7863396 |
ttgaatatttgtaaagtttagtgaatagagtagcgactctattgtgaagggaaaac |
7863451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 421 - 494
Target Start/End: Complemental strand, 34011919 - 34011847
Alignment:
| Q |
421 |
tagaaattggaatgcgcagaaacatgtgatgccaaattgaaagcataaatggaactcaaaacacacaacaatgg |
494 |
Q |
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| T |
34011919 |
tagaaattggaaaacgcaggaacatgc-ataccaaattgaaagcataaatcaaacgcaaaagacacaacaatgg |
34011847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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