View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8339_high_4 (Length: 260)
Name: NF8339_high_4
Description: NF8339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8339_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 18 - 249
Target Start/End: Original strand, 37739642 - 37739884
Alignment:
| Q |
18 |
aaacttaacttaagttttttaaaaaattattctacacaatcaattaaattatttgaatatatttaggaaaaatagatgagagttttatcgtttataccaa |
117 |
Q |
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| T |
37739642 |
aaacttaacttaagttttttaaaaaattattctacacaatcaattaaattatttgaatatatttaggaaaaatagatgagagttttatcgtttataccaa |
37739741 |
T |
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| Q |
118 |
atatggacgacacattcaatcatcgaaatatagtataaattaggttgagagact-------cgtggcatgtatcacatttttaatgcatttcactctcac |
210 |
Q |
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| T |
37739742 |
atatggacgacacagtcaatcatcgaaatatagtataaattaggttgagagactcgtgggccgtggcatgtatcacatttttaatgcatttcactctcac |
37739841 |
T |
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| Q |
211 |
acaca----ctaatacaaatacaacaaagtacataacattcat |
249 |
Q |
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||||| ||||||||||||||||||||||||||||| |||| |
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| T |
37739842 |
acacacacgctaatacaaatacaacaaagtacataacaatcat |
37739884 |
T |
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