View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8339_high_6 (Length: 241)
Name: NF8339_high_6
Description: NF8339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8339_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 43029116 - 43028892
Alignment:
| Q |
1 |
gatattcaacaaagctctgaaagaacgtacatacaaatgatggacaatttatagcaaaaattaccttgttgacgttaataacaaggtttgctttattata |
100 |
Q |
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| T |
43029116 |
gatattcaacaaagctctgaaagaacgtacatacaaatgatggacaatttatagcaaaaattaccttgttgacgttaataacaaggtttgctttattata |
43029017 |
T |
|
| Q |
101 |
atattttggtacaaaattagagtacgtaacatatgctgtcaatttctcttgttgacgttgaaatatagcatagcaaattaaattgaattttgatgaataa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43029016 |
atattttggtacaaaattagagtacgtaacatatgctgtcaacttctcttgttgacgttgaaatatagcatagcaaattaaattgaattttgatgaataa |
43028917 |
T |
|
| Q |
201 |
gggaatctcaagagcgcattgtttc |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
43028916 |
gggaatctcaagagcgcattgtttc |
43028892 |
T |
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