View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8339_low_2 (Length: 316)
Name: NF8339_low_2
Description: NF8339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8339_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 43029165 - 43029474
Alignment:
| Q |
1 |
atatgtcacctgcactttatgctagtaccttcaaatgcgaggtagatgaaaatccatcattaatgggttcttactatgcttctttatatccaaatttgcc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43029165 |
atatgtcacctgcactttatgctagtaccttcaaatgtgaggtagatgaaaatccatcattaatgggttcttactatgcttctttatatccaaatttgcc |
43029264 |
T |
|
| Q |
101 |
tattttagaaaacagtgctacttcaacatggatccttaatccattttctgatcatgaaactgaaaccattagggatcacaagaaattgaaaagatcaacc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43029265 |
tattttagaaaacagtgctacttcaacatggatccttaatccattttctgatcatgaaactgaaaccattagggatcacaagaaattgaaaagatcaacc |
43029364 |
T |
|
| Q |
201 |
gtaactatccctatttggtttgctaatttcagcagccatagtaatagtttcttcaataacatcaacagcaataacaacagtgtgaatagcattccaaggc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43029365 |
gtaactatccctatttggtttgctaatttcagcagccatagtaatagtttcttcaataacatcaacagcaataacaacagtgtgaatagcattccaaggc |
43029464 |
T |
|
| Q |
301 |
ttcatttcag |
310 |
Q |
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|||||||||| |
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| T |
43029465 |
ttcatttcag |
43029474 |
T |
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