View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8339_low_3 (Length: 265)
Name: NF8339_low_3
Description: NF8339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8339_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 5401258 - 5401501
Alignment:
| Q |
1 |
aagtggacaaatgtgagcttcttagggtattttgtatattaccattgaaataaaaggctaatgagaataatgtgtaatgcactaacctcttcgaacaaga |
100 |
Q |
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| T |
5401258 |
aagtggacaaatgtgagcttcttagggtattttgtatattaccattgaaataaaaggctaatgagaataatgtgtaatgcactaacctcttcgaacaaga |
5401357 |
T |
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| Q |
101 |
tatcctctaatgtgtaatagaaattgggtgtgtcgagacgtggcacgttctctgtgaagggggactcgtgaggtttgatcttaccgatgatttcaaaggg |
200 |
Q |
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| T |
5401358 |
tatcctctaatgtgtaatagaaattgggtgtgtcgaggcgtggcacatcctctgtgaagggggactcatgaggtttgatcttaccgatgatttcgaaggg |
5401457 |
T |
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| Q |
201 |
tcctacatagtgcttggcaccagtctgaagagacacatgggaaa |
244 |
Q |
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| T |
5401458 |
tcctacatagtgcttggcaccagtctgaagagacacatgggaaa |
5401501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 77 - 240
Target Start/End: Original strand, 5395187 - 5395350
Alignment:
| Q |
77 |
atgcactaacctcttcgaacaagatatcctctaatgtgtaatagaaattgggtgtgtcgagacgtggcacgttctctgtgaagggggactcgtgaggttt |
176 |
Q |
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| T |
5395187 |
atgcaccaacctcttctaacaagatatcctcctgtgtgtaatagaaattgggtgtgacaaggcgtggcacatcctccgtgaagggggactcatgggcctt |
5395286 |
T |
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| Q |
177 |
gatcttaccgatgatttcaaagggtcctacatagtgcttggcaccagtctgaagagacacatgg |
240 |
Q |
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| T |
5395287 |
gatcttaccgatcgtttcgaaggatcctaggtagtgcttagttcctgtttgaagggacacatgg |
5395350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 84 - 216
Target Start/End: Original strand, 5391383 - 5391515
Alignment:
| Q |
84 |
aacctcttcgaacaagatatcctctaatgtgtaatagaaattgggtgtgtcgagacgtggcacgttctctgtgaagggggactcgtgaggtttgatctta |
183 |
Q |
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||||||||| | ||||||||||||| ||||| |||||||||||||||| | || |||||||| | ||| ||||| |||||||| || || ||||||||| |
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| T |
5391383 |
aacctcttctagcaagatatcctcttgtgtgtgatagaaattgggtgtgacaaggcgtggcacatcctccgtgaaaggggactcatggggcttgatctta |
5391482 |
T |
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| Q |
184 |
ccgatgatttcaaagggtcctacatagtgcttg |
216 |
Q |
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| T |
5391483 |
ccgactatttcaaaggatccaaagtagtgcttg |
5391515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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