View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8340_high_3 (Length: 288)
Name: NF8340_high_3
Description: NF8340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8340_high_3 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 15 - 288
Target Start/End: Original strand, 580561 - 580834
Alignment:
| Q |
15 |
gagatagagttgatcacgatgttttggctgagatggatgtcttgtataggtgcattaaagaagccctgagactccaccctccactaattatgttgctgag |
114 |
Q |
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| T |
580561 |
gagatagagttgatcacgatgttttggctgagatggatgtcttgtataggtgcattaaagaagccctgagactccaccctccactaattatgttgctgag |
580660 |
T |
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| Q |
115 |
aagctcacacagcgatttcagcgtcacaacaagagaggggaaagagtatgacattcccaagggtcatatagttgctacatcccctgcatttgcaaacagg |
214 |
Q |
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| T |
580661 |
aagctcacacagcgatttcagcgtcacaacaagagaggggaaagagtatgacattcccaagggtcatatagttgctacatcccctgcatttgcaaacagg |
580760 |
T |
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| Q |
215 |
ttaccacacattttcaatgaccctgataagtatgatcctgataggtttgctgttgggagggaagaagacaaggc |
288 |
Q |
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| T |
580761 |
ttaccacacattttcaatgaccctgataagtatgatcctgataggtttgctgttgggagggaagaagacaaggc |
580834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 15 - 288
Target Start/End: Complemental strand, 591866 - 591593
Alignment:
| Q |
15 |
gagatagagttgatcacgatgttttggctgagatggatgtcttgtataggtgcattaaagaagccctgagactccaccctccactaattatgttgctgag |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
591866 |
gagatagagttgatcacgatgttttggctgagatggatgtcttgtataggtgcattaaagaagccctgagactccaccctccactaattatgttgctgag |
591767 |
T |
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| Q |
115 |
aagctcacacagcgatttcagcgtcacaacaagagaggggaaagagtatgacattcccaagggtcatatagttgctacatcccctgcatttgcaaacagg |
214 |
Q |
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| T |
591766 |
aagctcacacagcgatttcagcgtcacaacaagagaggggaaagagtatgacattcccaagggtcatatagttgctacatcccctgcatttgcaaacagg |
591667 |
T |
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| Q |
215 |
ttaccacacattttcaatgaccctgataagtatgatcctgataggtttgctgttgggagggaagaagacaaggc |
288 |
Q |
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| T |
591666 |
ttaccacacattttcaatgaccctgataagtatgatcctgataggtttgctgttgggagggaagaagacaaggc |
591593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 94; Significance: 6e-46; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 80 - 242
Target Start/End: Original strand, 37434363 - 37434527
Alignment:
| Q |
80 |
ctgagactccaccctccactaattatgttgctgagaagctcacacagcgatttcagcgtcacaacaagagaggggaaagagtatgacattcccaagggtc |
179 |
Q |
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|||||||||||||||||| | |||||| |||||||| ||||||| | ||||||||||||||||||||||| |||||| |||||| ||||||||||||| |
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| T |
37434363 |
ctgagactccaccctccattgattatgccgctgagaaactcacacggagatttcagcgtcacaacaagagaagggaaaaagtatggaattcccaagggtc |
37434462 |
T |
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| Q |
180 |
atat--agttgctacatcccctgcatttgcaaacaggttaccacacattttcaatgaccctgata |
242 |
Q |
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|||| |||||||||||||| ||||||||||||||||||||| || ||||||||||| ||||||| |
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| T |
37434463 |
atatagagttgctacatcccttgcatttgcaaacaggttacctcatattttcaatgatcctgata |
37434527 |
T |
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