View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8340_high_5 (Length: 241)
Name: NF8340_high_5
Description: NF8340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8340_high_5 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 17 - 241
Target Start/End: Original strand, 24857392 - 24857617
Alignment:
| Q |
17 |
aaaacctaaactccaatagcatgaagttatgatcattatt-ttannnnnnnacaatagttcttaactctagtatgcctttggaggaaatggaaatgtcaa |
115 |
Q |
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| T |
24857392 |
aaaacctaaactccaatagcatgaagttatgatcattattattttttttttacaatagttcttaactctagtatgtctttgaaggaaatggaaatgacaa |
24857491 |
T |
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| Q |
116 |
taatgaatgtgatagtggaaattataatcagatacatccttctatcatgtgaagatcaatggtgtaattactaaatttttactagactttttcaaatgaa |
215 |
Q |
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| T |
24857492 |
tgatgaatgtgatattggatgttatgatcaggcacatcgttctatcatgtgaagatcaatggtgtaattactaaatttttactagactttttcaaatgaa |
24857591 |
T |
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| Q |
216 |
ttagtagtttcttatgatgtgatatt |
241 |
Q |
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| T |
24857592 |
ttagtagtttcttatgatgtgatatt |
24857617 |
T |
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Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 175 - 237
Target Start/End: Complemental strand, 14434516 - 14434454
Alignment:
| Q |
175 |
tggtgtaattactaaatttttactagactttttcaaatgaattagtagtttcttatgatgtga |
237 |
Q |
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| T |
14434516 |
tggtgtaatcaataagtttttattagactttttcaaatgtattagtagtttcttatgatgtga |
14434454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 191 - 237
Target Start/End: Original strand, 33881441 - 33881487
Alignment:
| Q |
191 |
tttttactagactttttcaaatgaattagtagtttcttatgatgtga |
237 |
Q |
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| T |
33881441 |
tttttattagactttttcaaatgcattagtagtttcttatgatgtga |
33881487 |
T |
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Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 191 - 237
Target Start/End: Complemental strand, 35958781 - 35958735
Alignment:
| Q |
191 |
tttttactagactttttcaaatgaattagtagtttcttatgatgtga |
237 |
Q |
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| T |
35958781 |
tttttattagactttttcaaatgtattagtagtttcttatgatgtga |
35958735 |
T |
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