View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8340_low_1 (Length: 451)
Name: NF8340_low_1
Description: NF8340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8340_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 362; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 56 - 446
Target Start/End: Complemental strand, 581195 - 580805
Alignment:
| Q |
56 |
gaattccaaatcaagattctagttatccatggtcaaatgaacagtcaacatggacaatgaagcagaatcaataatgctaacaagaaaagcttcnnnnnnn |
155 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
581195 |
gaattccaaatcaagattctagttatccatggtcaaatgaacagtcaacatggacaatgaagcagaatcaataatgctaacaagaaaagcttcaaaaaaa |
581096 |
T |
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| Q |
156 |
gaaatccaagcagtacactggagcatatcatggccctattgattaacagaaagctccctccgcttgtatcggaccataacttttcctttcactccaacaa |
255 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
581095 |
gaaatccaagcagtacactggagcatatcatggccctattgattaacagaaagctccctccgcttgtatcggaccataacttttcctttcactccaacaa |
580996 |
T |
|
| Q |
256 |
ccatggcattccaatcaatctcagggaaaggtgacacaagctccagttcaaagttcctcagaagatgaatccaaattgcttttatctgcagatatgcaaa |
355 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
580995 |
ccatggcattccaatcaatctcagggaaaggtgacacaagctccagttcaaagttcctcagaagatgagtccaaattgcttttatctgcagatatgcaaa |
580896 |
T |
|
| Q |
356 |
aggctctccaaggcatccatgtcgaccacctccaaaggaaatgtaagagaatgcccctgctgccttgtcttcttccctcccaacaccaaac |
446 |
Q |
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| T |
580895 |
aggctctccaaggcatccatgtcgaccacctccaaaggaaatgtaagagaatgcccctgctgccttgtcttcttccctcccaacagcaaac |
580805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 56 - 446
Target Start/End: Original strand, 591232 - 591622
Alignment:
| Q |
56 |
gaattccaaatcaagattctagttatccatggtcaaatgaacagtcaacatggacaatgaagcagaatcaataatgctaacaagaaaagcttcnnnnnnn |
155 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
591232 |
gaattccaaatcaagattctagttatccatggtcaaatgaacagtcaacatggacaatgaagcacaatcaataatgctaacaagaaaagcttcaaaaaaa |
591331 |
T |
|
| Q |
156 |
gaaatccaagcagtacactggagcatatcatggccctattgattaacagaaagctccctccgcttgtatcggaccataacttttcctttcactccaacaa |
255 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
591332 |
gaaatccaagcagtacactggagcatatcatggccctattgattaacagaaagctccctccgcttgtatcggaccataacttttcctttcactccaacaa |
591431 |
T |
|
| Q |
256 |
ccatggcattccaatcaatctcagggaaaggtgacacaagctccagttcaaagttcctcagaagatgaatccaaattgcttttatctgcagatatgcaaa |
355 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
591432 |
ccatggcattccaatcaatctcagggaaaggtgacacaagctccagttcaaagttcctcagaagatgagtccaaattgcttttatctgcagatatgcaaa |
591531 |
T |
|
| Q |
356 |
aggctctccaaggcatccatgtcgaccacctccaaaggaaatgtaagagaatgcccctgctgccttgtcttcttccctcccaacaccaaac |
446 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
591532 |
aggctctccaaggcatccatgtcgaccacctccaaaggaaatgtaagagaatgcccctgctgccttgtcttcttccctcccaacagcaaac |
591622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 156 - 223
Target Start/End: Complemental strand, 37434696 - 37434629
Alignment:
| Q |
156 |
gaaatccaagcagtacactggagcatatcatggccctattgattaacagaaagctccctccgcttgta |
223 |
Q |
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|||||||||||||||||||| | |||||||| | ||||||| |||||||||||||||||||||||||| |
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| T |
37434696 |
gaaatccaagcagtacactgaaacatatcatagtcctattgtttaacagaaagctccctccgcttgta |
37434629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 369 - 435
Target Start/End: Complemental strand, 37434607 - 37434541
Alignment:
| Q |
369 |
catccatgtcgaccacctccaaaggaaatgtaagagaatgcccctgctgccttgtcttcttccctcc |
435 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||| |||||||| |
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| T |
37434607 |
catccatgtctaccacctccaaaggaaatgtaagagaatgcctctgccaccttgtctttttccctcc |
37434541 |
T |
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