View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8340_low_2 (Length: 377)

Name: NF8340_low_2
Description: NF8340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8340_low_2
NF8340_low_2
[»] chr1 (1 HSPs)
chr1 (1-363)||(34900545-34900908)
[»] chr2 (4 HSPs)
chr2 (40-138)||(26894639-26894737)
chr2 (40-138)||(26900078-26900176)
chr2 (40-138)||(4405789-4405887)
chr2 (202-256)||(20023954-20024008)
[»] scaffold0012 (1 HSPs)
scaffold0012 (15-120)||(183182-183286)
[»] chr6 (1 HSPs)
chr6 (40-138)||(9814699-9814797)
[»] chr7 (3 HSPs)
chr7 (39-90)||(29467354-29467405)
chr7 (34-96)||(30944960-30945022)
chr7 (40-96)||(30943933-30943989)


Alignment Details
Target: chr1 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 363
Target Start/End: Original strand, 34900545 - 34900908
Alignment:
Q  1 atgtaaactccttaattgagaaatatcttatgtttttgtttttgaatcgagagaaaagagttatatgttagatgaagccaccactaaggggaagacagct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  34900545 atgtaaactccttaattgagaaatatcttatgtttttgtttttgaatcgagagaaaagagttatatgttagatgaagccaccactaagggaaagacagct 34900644  T
Q  101 cttaggagaaaagagctatcgatgaaatggaactagttttcgcctcactggttatgattatattgttaaattgagttttttctacactttattttaaaaa 200  Q
    ||||| |||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  34900645 cttagaagaaaagagctatcaatgaaatggaactagttctcgcctcactcgttatgattatattactaaattgagttttttctacactttattttaaaaa 34900744  T
Q  201 agttatttttgattccacctccttacaacgttggaatttcttttgaaatatttttatttaattgacaacttttacaaactttataagttttcaaatatac 300  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34900745 agttatttttgattccacctccttacaacgttcgaatttcttttgaaatatttttatttaattgacaacttttacaaactttataagttttcaaatatac 34900844  T
Q  301 aac-gattgtgaattaaataaatgtttgtgcctttgtgtggttctcttctagctaatggtgatg 363  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34900845 aactgattgtgaattaaataaatgtttgtgcctttgtgtggttctcttctagctaatggtgatg 34900908  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 40 - 138
Target Start/End: Complemental strand, 26894737 - 26894639
Alignment:
Q  40 ttttgaatcgagagaaaagagttatatgttagatgaagccaccactaaggggaagacagctcttaggagaaaagagctatcgatgaaatggaactagtt 138  Q
    |||||| |||||||||||||||||| ||||||||||||| ||||||||| | ||| |  ||||||| || ||||||||||| | || ||||| ||||||    
T  26894737 ttttgagtcgagagaaaagagttatctgttagatgaagctaccactaagagaaaggccactcttagcaggaaagagctatcaacgagatggagctagtt 26894639  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 40 - 138
Target Start/End: Complemental strand, 26900176 - 26900078
Alignment:
Q  40 ttttgaatcgagagaaaagagttatatgttagatgaagccaccactaaggggaagacagctcttaggagaaaagagctatcgatgaaatggaactagtt 138  Q
    |||||| |||||||||||||||||| ||||||||||||| ||||||||| | ||| |  ||||||| || ||||||||||| | || ||||| ||||||    
T  26900176 ttttgagtcgagagaaaagagttatctgttagatgaagctaccactaagagaaaggccactcttagcaggaaagagctatcaacgagatggagctagtt 26900078  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 40 - 138
Target Start/End: Original strand, 4405789 - 4405887
Alignment:
Q  40 ttttgaatcgagagaaaagagttatatgttagatgaagccaccactaaggggaagacagctcttaggagaaaagagctatcgatgaaatggaactagtt 138  Q
    |||||| |||||||||||||| |||  |||||||||||| ||||||||||| ||| |  ||||||| || ||||||||||| | || ||||| ||||||    
T  4405789 ttttgagtcgagagaaaagagctatccgttagatgaagctaccactaagggaaaggccactcttagtaggaaagagctatcaacgagatggagctagtt 4405887  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 256
Target Start/End: Complemental strand, 20024008 - 20023954
Alignment:
Q  202 gttatttttgattccacctccttacaacgttggaatttcttttgaaatattttta 256  Q
    ||||||| |||||||| ||| |||||||||| || ||||||||||||||||||||    
T  20024008 gttatttctgattccatctctttacaacgtttgattttcttttgaaatattttta 20023954  T

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Target: scaffold0012 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 15 - 120
Target Start/End: Complemental strand, 183286 - 183182
Alignment:
Q  15 attgagaaatatcttatgtttttgtttttgaatcgagagaaaagagttatatgttagatgaagccaccactaaggggaagacagctcttaggagaaaaga 114  Q
    ||||| |||||| ||| ||||||||||| || |||||||||||||||||| |||||| || ||| |||||||| || |||    ||||||||||||||||    
T  183286 attgaaaaatattttacgtttttgtttt-gagtcgagagaaaagagttatttgttaggtggagctaccactaaaggaaaggtcactcttaggagaaaaga 183188  T
Q  115 gctatc 120  Q
    ||||||    
T  183187 gctatc 183182  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 138
Target Start/End: Original strand, 9814699 - 9814797
Alignment:
Q  40 ttttgaatcgagagaaaagagttatatgttagatgaagccaccactaaggggaagacagctcttaggagaaaagagctatcgatgaaatggaactagtt 138  Q
    |||||| |||||||||||||| |||  |||||||||||| ||||||||| | ||| |  ||||||| || ||||||||||| | || ||||| ||||||    
T  9814699 ttttgagtcgagagaaaagagctatccgttagatgaagctaccactaagagaaaggccactcttagtaggaaagagctatcaacgagatggagctagtt 9814797  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 39 - 90
Target Start/End: Complemental strand, 29467405 - 29467354
Alignment:
Q  39 tttttgaatcgagagaaaagagttatatgttagatgaagccaccactaaggg 90  Q
    ||||||| |||||||||||||| ||| ||||||||||| | |||||||||||    
T  29467405 tttttgagtcgagagaaaagagatatctgttagatgaatctaccactaaggg 29467354  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 96
Target Start/End: Original strand, 30944960 - 30945022
Alignment:
Q  34 ttttgtttttgaatcgagagaaaagagttatatgttagatgaagccaccactaaggggaagac 96  Q
    |||| ||||| | |||||||||||||| ||| ||||||||| ||| ||||||||||| |||||    
T  30944960 tttttttttttagtcgagagaaaagagctatctgttagatggagctaccactaagggaaagac 30945022  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 96
Target Start/End: Original strand, 30943933 - 30943989
Alignment:
Q  40 ttttgaatcgagagaaaagagttatatgttagatgaagccaccactaaggggaagac 96  Q
    |||||| |||||||||||||| |||  |||||||| ||| ||||||||||| |||||    
T  30943933 ttttgagtcgagagaaaagagctatccgttagatggagctaccactaagggaaagac 30943989  T

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