View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8340_low_5 (Length: 274)
Name: NF8340_low_5
Description: NF8340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8340_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 52760747 - 52760996
Alignment:
| Q |
1 |
agagtacgacgaaattcaacaacataaagacaggaaataaaagcaacgatgtttagatgcatgtaaactaccaacattctaaaaaacaaagcttcctaag |
100 |
Q |
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| T |
52760747 |
agagtacgacgaaattcaacaacataaagacaggaaataaaagcaacgatgtttagatgcatgtaaactaccaacattctaaaaaacaaagcttcctaag |
52760846 |
T |
|
| Q |
101 |
accaaagccaccacaacattgataccaacataaccactcaatctcgcagaaccagaatgatgaggacttggtgctggagcatgcgttttagtaacacttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52760847 |
accaaagccaccacaacattgataccaacataaccactcaatctcgcagaaccagaatgatgaggacttggtgctggagcatgcgttttagtaacacttg |
52760946 |
T |
|
| Q |
201 |
gcgccgaagcatgagcggtgctggtttcacttggtgccggagcatgggtg |
250 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52760947 |
gcgccgaagcatgagcggtgctggtttcacttggtgccggagcatgggtg |
52760996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 78 - 182
Target Start/End: Complemental strand, 52796987 - 52796883
Alignment:
| Q |
78 |
tctaaaaaacaaagcttcctaagaccaaagccaccacaacattgataccaacataaccactcaatctcgcagaaccagaatgatgaggacttggtgctgg |
177 |
Q |
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|||||| | |||||||||||||||| ||||||||||||||| ||| |||||| | ||||||| ||||||||||| ||| ||| ||||||||||| || |
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| T |
52796987 |
tctaaatagcaaagcttcctaagacaaaagccaccacaacactgaccccaacagacccactcatcctcgcagaacccgaacgattaggacttggtgaagg |
52796888 |
T |
|
| Q |
178 |
agcat |
182 |
Q |
| |
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||||| |
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|
| T |
52796887 |
agcat |
52796883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 73 - 181
Target Start/End: Complemental strand, 52798882 - 52798774
Alignment:
| Q |
73 |
aacattctaaaaaacaaagcttcctaagaccaaagccaccacaacattgataccaacataaccactcaatctcgcagaaccagaatgatgaggacttggt |
172 |
Q |
| |
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||||||||||||| ||||| |||||||||||||||||||||||||| | | |||| || |||||||||| || | |||||| ||||| | |||||| || |
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| T |
52798882 |
aacattctaaaaagcaaaggttcctaagaccaaagccaccacaacactaacaccatcagaaccactcaacctggtagaacccgaatgtttaggactaggc |
52798783 |
T |
|
| Q |
173 |
gctggagca |
181 |
Q |
| |
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|| |||||| |
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| T |
52798782 |
gccggagca |
52798774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 73 - 160
Target Start/End: Original strand, 38710644 - 38710731
Alignment:
| Q |
73 |
aacattctaaaaaacaaagcttcctaagaccaaagccaccacaacattgataccaacataaccactcaatctcgcagaaccagaatga |
160 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||| | | ||||||| |||||||||| ||| |||||| |||||| |
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| T |
38710644 |
aacattctaaaaagcaaagcttcctaagaccaaagccaccacaacactcacaccaacaaaaccactcaacctcctagaacccgaatga |
38710731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 73 - 141
Target Start/End: Original strand, 42094276 - 42094344
Alignment:
| Q |
73 |
aacattctaaaaaacaaagcttcctaagaccaaagccaccacaacattgataccaacataaccactcaa |
141 |
Q |
| |
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||||||||||||| ||| ||||||||| ||||| |||||||||||||||| ||||||| |||||||||| |
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|
| T |
42094276 |
aacattctaaaaagcaaggcttcctaataccaatgccaccacaacattgacaccaacagaaccactcaa |
42094344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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