View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8341_high_1 (Length: 664)

Name: NF8341_high_1
Description: NF8341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8341_high_1
NF8341_high_1
[»] chr1 (1 HSPs)
chr1 (8-647)||(6019499-6020138)


Alignment Details
Target: chr1 (Bit Score: 603; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 603; E-Value: 0
Query Start/End: Original strand, 8 - 647
Target Start/End: Original strand, 6019499 - 6020138
Alignment:
Q  8 agaagcagagaataaaacatgccttcaatcttgtatggggaaaatgtaggaacatgatgccagcaccaattgaactgtgtgtgagccatattcttgtccc 107  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6019499 agaatcagaggataaaacatgccttcaatcttgtatggggaaaatgtaggaacatgatgccagcaccaattgaactgtgtgtgagccatattcttgtccc 6019598  T
Q  108 aaactgccaaaagaagatgtaactgttaagcaatagaggcaacnnnnnnnccttcatatagtcacatatacttattttataccctactgcaacaagactt 207  Q
    |||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6019599 aaactgccaaaagaagatgtaactgttaagcaatagaggcaacaaaaaaaccttcatatagtcacatatacttattttataccctactgcaacaagactt 6019698  T
Q  208 caagagtcatttctctgagtaaggtcactcctacacagattaaatgatgccattatgtctatccaaaccaagacttgggacttaggagcaaccatttaga 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  6019699 caagagtcatttctctgagtaaggtcactcctacacagattaaatgatgccattatgtctatcaaaaccaagacttgggacttaggagcaaccatttaga 6019798  T
Q  308 tccaaatcatttttaatagttttgctgtttttcttaatcatattcagcatctgacattgcaagccacttcgcatttgatcaattattattattggtcttt 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6019799 tccaaatcatttttaatagttttgctgtttttcttaatcatattcagcatctgacattgcaagccacttcgcatttgatcaattattattattggtcttt 6019898  T
Q  408 tactcgtctgaccaaactatcttatagatgacattctaccaagtaccaccttttgcttaatatatgccatcatatttcctgtcttttacaaatgtagtca 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6019899 tactcgtctgaccaaactatcttatagatgacattctaccaagtaccaccttttgcttaatatatgccatcatatttcctgtcttttacaaatgtagtca 6019998  T
Q  508 gttccgatcttgtatattcatttctttcctacaaacaactgtaaagcagaagttcaaatgaataatatggtaacaactttaagtctcaagacgaagaaaa 607  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  6019999 gttccgatcttgtatattcatttctttcctacaaacaactgtaaagcagaagttcaaatgaataatatggtagcaactttaagtctcaagacgaagaaaa 6020098  T
Q  608 tatttggttctacagctttctaaaagggtgatgccatttc 647  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  6020099 tatttggttctacagctttctaaaagggtgatgccatttc 6020138  T

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