View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8341_high_14 (Length: 234)
Name: NF8341_high_14
Description: NF8341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8341_high_14 |
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Alignment Details
Target: chr2 (Bit Score: 171; Significance: 6e-92; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 14 - 216
Target Start/End: Original strand, 2326813 - 2327014
Alignment:
| Q |
14 |
ttggtgttgccaatggaaaaacagaagttgactgaggatgaaatggttagtctttgttcggagtttttgaatgctggtacagatactacttccaccgctt |
113 |
Q |
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| T |
2326813 |
ttggagttgccaatggaaaaacggaagttgactgaggatgaaatggttagtctttgttcggagtttttgaatgctggtacagatactacttccaccgctt |
2326912 |
T |
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| Q |
114 |
tgcattggattatggcaaatttgattgaagtacccggacgttcaaaggaggcttgtgcaggagattagggaggtcatgggtggtgatggtgttgtaaaga |
213 |
Q |
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|||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |
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| T |
2326913 |
tgcattggattatggcgaatttg-gtgaagtacccggacgttcaaaggaggcttgtgcaggagattagggagttcatgggtggtgatggtgttgtagaga |
2327011 |
T |
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| Q |
214 |
agg |
216 |
Q |
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||| |
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| T |
2327012 |
agg |
2327014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 32 - 202
Target Start/End: Original strand, 2350852 - 2351021
Alignment:
| Q |
32 |
aaacagaagttgactgaggatgaaatggttagtctttgttcggagtttttgaatgctggtacagatactacttccaccgctttgcattggattatggcaa |
131 |
Q |
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|||| ||| |||| ||| ||||||||||||||||||||||| ||||||||||||||||| | ||||||||||||||| |||||||| ||||||||||||| |
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| T |
2350852 |
aaacggaaattgagtgaagatgaaatggttagtctttgttcagagtttttgaatgctgggatagatactacttccacggctttgcaatggattatggcaa |
2350951 |
T |
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| Q |
132 |
atttgattgaagtacccggacgttcaaaggaggcttgtgcaggagattagggaggtcatgggtggtgatgg |
202 |
Q |
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| T |
2350952 |
atttg-gtgaagtaccccgacgtgcaagggaggcttgtggacgagattagggaggtgatgggtcgtgatgg |
2351021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 32 - 201
Target Start/End: Original strand, 2330546 - 2330714
Alignment:
| Q |
32 |
aaacagaagttgactgaggatgaaatggttagtctttgttcggagtttttgaatgctggtacagatactacttccaccgctttgcattggattatggcaa |
131 |
Q |
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|||| ||| |||| ||||||||||||| ||||||||||||||||||||||||| | ||| || ||||||||||||||||||||||| ||||||||||| | |
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| T |
2330546 |
aaacggaaattgagtgaggatgaaatgattagtctttgttcggagtttttgaacggtggcacggatactacttccaccgctttgcaatggattatggcga |
2330645 |
T |
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| Q |
132 |
atttgattgaagtacccggacgttcaaaggaggcttgtgcaggagattagggaggtcatgggtggtgatg |
201 |
Q |
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| T |
2330646 |
atttg-gtgaagtacccggacgttcaggggaagcttgtggaggagattacagaggtgatgggtggcgatg |
2330714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 38 - 201
Target Start/End: Original strand, 2303282 - 2303444
Alignment:
| Q |
38 |
aagttgactgaggatgaaatggttagtctttgttcggagtttttgaatgctggtacagatactacttccaccgctttgcattggattatggcaaatttga |
137 |
Q |
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||||||| |||| |||||||||||| ||||||||| |||||| |||||| ||| || |||||||||||||| ||||||| ||||||||||| |||||| |
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| T |
2303282 |
aagttgagtgagaatgaaatggttaatctttgttcagagtttctgaatggtgggacggatactacttccactactttgcaatggattatggcgaatttgg |
2303381 |
T |
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| Q |
138 |
ttgaagtacccggacgttcaaaggaggcttgtgcaggagattagggaggtcatgggtggtgatg |
201 |
Q |
| |
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|| |||||||| || || || |||||||||||| |||||||| ||||||| ||||||||||||| |
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| T |
2303382 |
tt-aagtacccagaagtgcagaggaggcttgtggaggagattcgggaggtgatgggtggtgatg |
2303444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 38 - 201
Target Start/End: Original strand, 2320983 - 2321145
Alignment:
| Q |
38 |
aagttgactgaggatgaaatggttagtctttgttcggagtttttgaatgctggtacagatactacttccaccgctttgcattggattatggcaaatttga |
137 |
Q |
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||||||| |||| |||||||||||| ||||||||||||||||||||| | ||| || |||||||||||||| |||||||| ||||||||||| |||||| |
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| T |
2320983 |
aagttgagtgagaatgaaatggttaatctttgttcggagtttttgaacggtgggacggatactacttccactgctttgcagtggattatggcgaatttg- |
2321081 |
T |
|
| Q |
138 |
ttgaagtacccggacgttcaaaggaggcttgtgcaggagattagggaggtcatgggtggtgatg |
201 |
Q |
| |
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||||||||||||| || || ||||||||||| |||||||| | ||||| |||| | |||||| |
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| T |
2321082 |
gtgaagtacccggaagtgcaggggaggcttgtggaggagattcgtgaggtgatggttagtgatg |
2321145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 32 - 201
Target Start/End: Original strand, 2293663 - 2293831
Alignment:
| Q |
32 |
aaacagaagttgactgaggatgaaatggttagtctttgttcggagtttttgaatgctggtacagatactacttccaccgctttgcattggattatggcaa |
131 |
Q |
| |
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|||| |||| ||| |||| |||||||||||| ||||||||| ||||||||||| | ||| ||||| ||||||||||| |||||| ||||||||||| | |
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| T |
2293663 |
aaacggaagctgagtgagaatgaaatggttaatctttgttcagagtttttgaacggtgggacagacactacttccactagtttgcagtggattatggcga |
2293762 |
T |
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| Q |
132 |
atttgattgaagtacccggacgttcaaaggaggcttgtgcaggagattagggaggtcatgggtggtgatg |
201 |
Q |
| |
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|| | | |||||||||| || || || ||||||||||| |||||||| ||||||| ||||||||||||| |
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| T |
2293763 |
atgt-agtgaagtacccagaagtgcaggggaggcttgtggaggagattcgggaggtgatgggtggtgatg |
2293831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 32 - 201
Target Start/End: Original strand, 2309994 - 2310162
Alignment:
| Q |
32 |
aaacagaagttgactgaggatgaaatggttagtctttgttcggagtttttgaatgctggtacagatactacttccaccgctttgcattggattatggcaa |
131 |
Q |
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|||| |||| ||| |||| |||||||||||| ||||||||| ||||||||||| | ||| ||||| ||||||||||| |||| | ||||||||||| | |
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| T |
2309994 |
aaacggaagctgagtgagaatgaaatggttaatctttgttcagagtttttgaacggtgggacagacactacttccactagtttggagtggattatggcga |
2310093 |
T |
|
| Q |
132 |
atttgattgaagtacccggacgttcaaaggaggcttgtgcaggagattagggaggtcatgggtggtgatg |
201 |
Q |
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|| || |||||||||| || || | ||||||||||| |||||||| ||||||| ||||||||||||| |
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| T |
2310094 |
atgtg-gtgaagtacccagaagtgaaggggaggcttgtggaggagattcgggaggtgatgggtggtgatg |
2310162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 96
Target Start/End: Original strand, 41126873 - 41126919
Alignment:
| Q |
50 |
gatgaaatggttagtctttgttcggagtttttgaatgctggtacaga |
96 |
Q |
| |
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||||||||||| || |||||||| ||||||||||||||||| ||||| |
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| T |
41126873 |
gatgaaatggtcagcctttgttcagagtttttgaatgctggcacaga |
41126919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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