View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8341_high_2 (Length: 628)
Name: NF8341_high_2
Description: NF8341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8341_high_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 497; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 25 - 610
Target Start/End: Original strand, 54591999 - 54592587
Alignment:
| Q |
25 |
ttcaatcacttttattttcttaaattactaacaatgtttacatgttggcgtccgtgccatgtatgtgtaaaatgtaaatgcttcataggttactaatgct |
124 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54591999 |
ttcaatcacttttattttctcaaattactaacaatgtttacatgtcggcgtccgtgccatgtatgtgtaaaatgtaaatgcttcataggttactaatgct |
54592098 |
T |
|
| Q |
125 |
tgtttaaaaggaatttcacaatttcacttcaactagacaaaacaagtatctgaaattggggtggtcataatcagccaccactggtgctatacgttgaact |
224 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54592099 |
tgtttaaaaggaattttacaatttcacttcaactagacaaaacaagtatctgaaattggggtggtcataatcagccaccactggtgctatacgttgaact |
54592198 |
T |
|
| Q |
225 |
agtaaaaagtgcagactatgttattttattcagttctcagatttttggaattggtttttcggatcttttctcccaattactacattccaaaaggatctag |
324 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54592199 |
agtaaaaagtgcagactatgttattttattcagttctcagatttttggaattggtttttcggatcttttctcccaattactacattccaaaaggatctag |
54592298 |
T |
|
| Q |
325 |
ctggctatctgaaacatgtgaataaatataccaaa-ttcatctgctatctagacttgtgatattactatttaaaatatgtattggtacttttcatatgat |
423 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
54592299 |
ctggctatctgaaacatgtgaatacatataccaaatttcatctgctatctagacttgtgatattactatttaaaatatgtattggtacttttaatatgat |
54592398 |
T |
|
| Q |
424 |
ttcaaaattatgc--aatcgggtagaatttcattgctatacattgatagtgtaannnnnnnnacacatgtcgaatcatatatttctgttgttttctttaa |
521 |
Q |
| |
|
||||||||||||| |||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54592399 |
ttcaaaattatgcataatcaggtagaatttcattgctatacattgatagtgtaattttttttacacatgtcgaatcatatatttctgttgttttctttaa |
54592498 |
T |
|
| Q |
522 |
tcacttctgctgtaaaatttccaatcaagctacaagttaacnnnnnnnaaataacctccaagtaagttgatctttataaatataagttt |
610 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54592499 |
tcacttctgctgtaaaatttccgatcaagctacaagttaactttttttaaataacctccaagtaagttgatctttataaatataagttt |
54592587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 51
Target Start/End: Complemental strand, 17105302 - 17105273
Alignment:
| Q |
22 |
acattcaatcacttttattttcttaaatta |
51 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
17105302 |
acattcaatcacttttattttcttaaatta |
17105273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 10338649 - 10338605
Alignment:
| Q |
22 |
acattcaatcacttttattttcttaaattactaacaatgtttaca |
66 |
Q |
| |
|
|||||||||||||| ||||||||||||||| || ||||||||||| |
|
|
| T |
10338649 |
acattcaatcacttctattttcttaaattattatcaatgtttaca |
10338605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 59
Target Start/End: Original strand, 1960348 - 1960385
Alignment:
| Q |
22 |
acattcaatcacttttattttcttaaattactaacaat |
59 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
1960348 |
acattcaatcactttcattttcttaaattactaccaat |
1960385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 3943811 - 3943761
Alignment:
| Q |
1 |
acacaatacaaacataccgtgacattcaatcacttttattttcttaaatta |
51 |
Q |
| |
|
||||||||| ||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
3943811 |
acacaatactaacatgtggttacattcaatcacttttattttcttaaatta |
3943761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 51
Target Start/End: Complemental strand, 10440413 - 10440384
Alignment:
| Q |
22 |
acattcaatcacttttattttcttaaatta |
51 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
10440413 |
acattcaatcacttttattttcttaaatta |
10440384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 22 - 50
Target Start/End: Original strand, 8431282 - 8431310
Alignment:
| Q |
22 |
acattcaatcacttttattttcttaaatt |
50 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
8431282 |
acattcaatcacttttattttcttaaatt |
8431310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 23 - 51
Target Start/End: Complemental strand, 12170632 - 12170604
Alignment:
| Q |
23 |
cattcaatcacttttattttcttaaatta |
51 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
12170632 |
cattcaatcacttttattttcttaaatta |
12170604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 23 - 51
Target Start/End: Complemental strand, 12415060 - 12415032
Alignment:
| Q |
23 |
cattcaatcacttttattttcttaaatta |
51 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
12415060 |
cattcaatcacttttattttcttaaatta |
12415032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University