View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8341_high_4 (Length: 436)
Name: NF8341_high_4
Description: NF8341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8341_high_4 |
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| [»] scaffold0438 (1 HSPs) |
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| [»] scaffold0023 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 373; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 18 - 410
Target Start/End: Original strand, 18557039 - 18557431
Alignment:
| Q |
18 |
ccgagtcgtcccatcaaatcgtcgtttgatgaaaatcaattcggaagcatggcagcaacctcgccgataagaagttattttgtcgccgccatgcttgcac |
117 |
Q |
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||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
18557039 |
ccgagtcctcccatcaaatcgtcgtttgatgaaaatcaattcagaagcatggcagcaacctcgccgataagaagttattccgtcgccgccatgcttgcac |
18557138 |
T |
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| Q |
118 |
ctcgtcccgttctcacaaaaagaaatcacttccgaggctatacatggcaaagtcagaatcgctacaataatgaaagcaggcttgttagtatcccttcagt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
18557139 |
ctcgtcccgttctcacaaaaagaaatcacttccgaggctatacatggcaaagtcagaatcgctaaaataatgaaagcaggcttgttagtatcccttcagt |
18557238 |
T |
|
| Q |
218 |
caaaggggaatcggcactcaacaggtttcaccgctgaagcttaactagggttgcgtagtgctttaatttttcgagagaacatccagtttggctgctatgg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18557239 |
caaaggggaatcggcactcaacaggtttcaccgctgaagcttaactagggttgcgtagtgctttaatttttcgagagaacatccagtttggctgctatgg |
18557338 |
T |
|
| Q |
318 |
acactaaaagaacatggtgtgattaacctcaatcatgctgcatatactgatctggacaagtctacttcattttctggtgtttatgatggtcat |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18557339 |
acactaaaagaacatggtgtgattaacctcaatcatgctgcatatactgatctggacaagtctacttcattttctggtgtttatgatggtcat |
18557431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 351 - 410
Target Start/End: Original strand, 48832643 - 48832702
Alignment:
| Q |
351 |
catgctgcatatactgatctggacaagtctacttcattttctggtgtttatgatggtcat |
410 |
Q |
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| T |
48832643 |
catgctgcatatactgatctggacaagtctacttcattttttggtgtttatgatggtcat |
48832702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0438 (Bit Score: 91; Significance: 6e-44; HSPs: 1)
Name: scaffold0438
Description:
Target: scaffold0438; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 45 - 250
Target Start/End: Complemental strand, 3616 - 3408
Alignment:
| Q |
45 |
gatgaaaatcaattcggaagcatggcagcaacctcgcc---gataagaagttattttgtcgccgccatgcttgcacctcgtcccgttctcacaaaaagaa |
141 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||| ||||||| || | |||||||||||||| |
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| T |
3616 |
gatgaaaatcaattcggaagcatggcagcaacctcgccaccgataagaagttgtttcgtcgccgccatgcctgcacctaatctcattctcacaaaaagag |
3517 |
T |
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| Q |
142 |
atcacttccgaggctatacatggcaaagtcagaatcgctacaataatgaaagcaggcttgttagtatcccttcagtcaaaggggaatcggcactcaacag |
241 |
Q |
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|||||| || |||||||| || ||||||| |||| |||||||||||||||||||||||| | || |||||| || |||| |||||| |||| |||| |
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| T |
3516 |
gccacttctgaagctatacaaggaaaagtcaaaatcactacaataatgaaagcaggcttgtgaaaattccttcaatcgaaggagaatcgacacttaacat |
3417 |
T |
|
| Q |
242 |
gtttcaccg |
250 |
Q |
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||||||||| |
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| T |
3416 |
gtttcaccg |
3408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 88; Significance: 4e-42; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 40 - 250
Target Start/End: Complemental strand, 16083233 - 16083020
Alignment:
| Q |
40 |
cgtttgatgaaaatcaattcggaagcatggcagcaacctcgccga---taagaagttattttgtcgccgccatgcttgcacctcgtcccgttctcacaaa |
136 |
Q |
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|||| |||||||||||||||||||||| |||| |||||||||||| ||||||||| ||| |||||| |||| | |||||||| || | |||||||||| |
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| T |
16083233 |
cgttggatgaaaatcaattcggaagcaaggcaacaacctcgccgacgataagaagttgtttcgtcgccaccatacctgcacctcatctcattctcacaaa |
16083134 |
T |
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| Q |
137 |
aagaaatcacttccgaggctatacatggcaaagtcagaatcgctacaataatgaaagcaggcttgttagtatcccttcagtcaaaggggaatcggcactc |
236 |
Q |
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|||| | |||||| || |||||||| |||||||||| |||||||||||||||||||| |||||||| | || |||||| || |||| |||||| |||| |
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| T |
16083133 |
aagagaccacttctgaagctatacaaggcaaagtcaaaatcgctacaataatgaaagaaggcttgtgaaaattccttcaatcgaaggagaatcgacactt |
16083034 |
T |
|
| Q |
237 |
aacaggtttcaccg |
250 |
Q |
| |
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|| ||||||||||| |
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| T |
16083033 |
aataggtttcaccg |
16083020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 45 - 83
Target Start/End: Complemental strand, 26908303 - 26908265
Alignment:
| Q |
45 |
gatgaaaatcaattcggaagcatggcagcaacctcgccg |
83 |
Q |
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| T |
26908303 |
gatgaaaatcaattcggaagcatggcagcaacctcgccg |
26908265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0023 (Bit Score: 79; Significance: 9e-37; HSPs: 1)
Name: scaffold0023
Description:
Target: scaffold0023; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 76 - 178
Target Start/End: Original strand, 147035 - 147137
Alignment:
| Q |
76 |
cctcgccgataagaagttattttgtcgccgccatgcttgcacctcgtcccgttctcacaaaaagaaatcacttccgaggctatacatggcaaagtcagaa |
175 |
Q |
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||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||| |
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| T |
147035 |
cctcgccgataagaagttattccgtcgccgccatgcctgcacctcgtcccgatctcacaaaaagaaatcacttccgaggctatagatggcgaagtcagaa |
147134 |
T |
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| Q |
176 |
tcg |
178 |
Q |
| |
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||| |
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| T |
147135 |
tcg |
147137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 246 - 288
Target Start/End: Complemental strand, 25951192 - 25951150
Alignment:
| Q |
246 |
caccgctgaagcttaactagggttgcgtagtgctttaattttt |
288 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||| |
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| T |
25951192 |
caccgctgaaacttaactagggttgcgtagtgctttaattttt |
25951150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 302 - 350
Target Start/End: Complemental strand, 28925804 - 28925756
Alignment:
| Q |
302 |
agtttggctgctatggacactaaaagaacatggtgtgattaacctcaat |
350 |
Q |
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|||||||||||||| |||||||||||| |||||| |||| |||||||| |
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| T |
28925804 |
agtttggctgctatagacactaaaagagcatggtatgatcgacctcaat |
28925756 |
T |
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