View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8341_high_7 (Length: 342)
Name: NF8341_high_7
Description: NF8341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8341_high_7 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 7 - 342
Target Start/End: Original strand, 43780852 - 43781187
Alignment:
| Q |
7 |
tggtgaacttctaatctgcttctcaatatgaaatatcaaacatcttctcattgttcaatgggtcaaacctttggcggtggaaacaaagtagtgacttact |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43780852 |
tggtgaacttctaatctgcttctcaatatgaaatatcaaacatcttctcattgttcaatgggtcaaacctttggcggtggaaacaaagtagtgacttact |
43780951 |
T |
|
| Q |
107 |
agcgagttatcaaagtatgaattttaaaatcacactaccggtggtgtgctatgttatagcagtataggcttagtgttacttaattcaatcttttcatttg |
206 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43780952 |
agcgagttatcgaagtatgaattttaaaatcacactaccagtggtgtgctatgttatagcagtataggcttagtgttacttaattcaatcttttcatttg |
43781051 |
T |
|
| Q |
207 |
ttttaggatgaagttggaatactttgtacatcataggtggtttttgaagaattgaaacagctactgtgaaactgtggaactataacgttacacccttgaa |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
43781052 |
ttttaggatgaagttggaatactttgtacatcataggtggtttttgaagaattgaaacagctactgtgaaactgtggaactataacgttacacccttgga |
43781151 |
T |
|
| Q |
307 |
tactttgtacatcatagatggtttctgaagtggatt |
342 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
43781152 |
tactttgtacatcatagatggtttctgaagtggatt |
43781187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University