View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8341_low_10 (Length: 389)
Name: NF8341_low_10
Description: NF8341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8341_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 315; Significance: 1e-177; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 375
Target Start/End: Original strand, 55714139 - 55714508
Alignment:
| Q |
1 |
tcgcatagaatactcctctttgtggtaggacatgtggtcgtgtcacaaggcctttctagtttaattagaagagcttatagtatatataacataatgtcac |
100 |
Q |
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| T |
55714139 |
tcgcatagaatgctcctctttgtggtagggcacgtggtcgtgtcacaaggcctttctagtttaattagaatagcttatagtatatataacataatgtcac |
55714238 |
T |
|
| Q |
101 |
aagagggtggcatgatgtttatatctacatatctatacctatatgatatgatgagaattgtcttcttctattgagtgaacatacacatgcggggaattta |
200 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
55714239 |
aagagggtggcataatgtttatatctacatatctatacctatatgatatgatgagaattgtcttcttctattgagtgaacatacacacgcggggaattta |
55714338 |
T |
|
| Q |
201 |
ttattcaaagctagctcctttatgatatagatatacttcacttcacccaccacattactgaaactttgtaagttgtaaccaactagtgttagcaagaaat |
300 |
Q |
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||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55714339 |
ttattcaaagctaactcctttatgatatagatat-----acttcacccactacattactgaaactttgtaagttgtaaccaactagtgttagcaagaaat |
55714433 |
T |
|
| Q |
301 |
ctatccatcttagaatagattctatcattgcttgcttgattactgcaccatgtgtaataatctcctattgttctt |
375 |
Q |
| |
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| T |
55714434 |
ctatccatcttagaatagattctatcattgcttgcttggttgctgcaccatgtgtaataatctcctattgttctt |
55714508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 7 - 127
Target Start/End: Original strand, 55297430 - 55297554
Alignment:
| Q |
7 |
agaatactcctctttgtggtaggacatgtggtcgtgtcacaaggcctttctagtttaattagaagagcttatag----tatatataacataatgtcacaa |
102 |
Q |
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| T |
55297430 |
agaatgctcttctttgtggcagggcaagtggtcgtgtcacaaggcctttctagtttaattaggatagtttatagtatatatatataacatgatgtcacga |
55297529 |
T |
|
| Q |
103 |
gagggtggcatgatgtttatatcta |
127 |
Q |
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| T |
55297530 |
gagggtggcataatgtttatatcta |
55297554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 274 - 368
Target Start/End: Complemental strand, 5666464 - 5666370
Alignment:
| Q |
274 |
tgtaaccaactagtgttagcaagaaatctatccatcttagaatagattctatcattgcttgcttgattactgcaccatgtgtaataatctcctat |
368 |
Q |
| |
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||||||||| ||||| |||||| ||| ||||| ||||||||||||||||||||| |||||||| ||| |||||||||||||||| |||||||| |
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| T |
5666464 |
tgtaaccaagtagtgctagcaataaacctatctatcttagaatagattctatcaccacttgcttggttattgcaccatgtgtaatactctcctat |
5666370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 279 - 326
Target Start/End: Original strand, 3940682 - 3940729
Alignment:
| Q |
279 |
ccaactagtgttagcaagaaatctatccatcttagaatagattctatc |
326 |
Q |
| |
|
||||||||| ||||||| ||||||||| ||||||||||| |||||||| |
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|
| T |
3940682 |
ccaactagtattagcaataaatctatctatcttagaatatattctatc |
3940729 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 273 - 372
Target Start/End: Original strand, 1163200 - 1163300
Alignment:
| Q |
273 |
ttgtaaccaa-ctagtgttagcaagaaatctatccatcttagaatagattctatcattgcttgcttgattactgcaccatgtgtaataatctcctattgt |
371 |
Q |
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|||||||||| |||||||| |||||||||||||| ||||||||||||||| ||| ||| |||||||||||| ||||||||||||||||||| |||||||| |
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| T |
1163200 |
ttgtaaccaaactagtgttggcaagaaatctatctatcttagaatagattttataatttcttgcttgattattgcaccatgtgtaataatcccctattgt |
1163299 |
T |
|
| Q |
372 |
t |
372 |
Q |
| |
|
| |
|
|
| T |
1163300 |
t |
1163300 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 274 - 375
Target Start/End: Complemental strand, 40951044 - 40950943
Alignment:
| Q |
274 |
tgtaaccaactagtgttagcaagaaatctatccatcttagaatagattctatcattgcttgcttgattactgcaccatgtgtaataatctcctattgttc |
373 |
Q |
| |
|
||||||||| |||||||||||||||| ||||| |||||||||||||||| |||||||||||||| ||| ||||||| ||||||||||| ||||| |||| |
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| T |
40951044 |
tgtaaccaattagtgttagcaagaaacctatctatcttagaatagattccgtcattgcttgcttggttattgcaccaagtgtaataatcacctatagttc |
40950945 |
T |
|
| Q |
374 |
tt |
375 |
Q |
| |
|
|| |
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|
| T |
40950944 |
tt |
40950943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 273 - 375
Target Start/End: Complemental strand, 25768053 - 25767947
Alignment:
| Q |
273 |
ttgtaaccaactagtgttagcaagaaatctatccatcttagaatagattctatcattgcttgcttgattactgcac----catgtgtaataatctcctat |
368 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |||||||||||||||||||||| ||| |||| ||| ||||| |||||||||||||||||||| |
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| T |
25768053 |
ttgtaaccaactagtgttagcaagaaatatatctatcttagaatagattctatcatggctgacttggttattgcaccatgcatgtgtaataatctcctat |
25767954 |
T |
|
| Q |
369 |
tgttctt |
375 |
Q |
| |
|
||||||| |
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|
| T |
25767953 |
tgttctt |
25767947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 279 - 369
Target Start/End: Original strand, 27186826 - 27186916
Alignment:
| Q |
279 |
ccaactagtgttagcaagaaatctatccatcttagaatagattctatcattgcttgcttgattactgcaccatgtgtaataatctcctatt |
369 |
Q |
| |
|
|||| |||||||||||| ||| ||||| ||||||||||| ||| ||||| |||||||| ||| | |||||| ||||||||||||||||| |
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| T |
27186826 |
ccaagtagtgttagcaataaacctatctatcttagaatatattatatcaccacttgcttggttattacaccatttgtaataatctcctatt |
27186916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 279 - 374
Target Start/End: Original strand, 35168950 - 35169045
Alignment:
| Q |
279 |
ccaactagtgttagcaagaaatctatccatcttagaatagattctatcattgcttgcttgattactgcaccatgtgtaataatctcctattgttct |
374 |
Q |
| |
|
||||||||||||||||| |||||| || |||||| ||||||||||||| || ||||| ||| | |||||||| |||| |||||| |||||||| |
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|
| T |
35168950 |
ccaactagtgttagcaataaatctgtctatcttataatagattctatctccactagcttggttattacaccatgtataatgatctccgattgttct |
35169045 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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