View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8341_low_13 (Length: 306)
Name: NF8341_low_13
Description: NF8341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8341_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 19 - 291
Target Start/End: Original strand, 50962393 - 50962665
Alignment:
| Q |
19 |
aagaaggaatgaacacaaccatccaataataatcagcaatctcttgatcggtaagataaaaagcaccaggaatcaaatccgaataagagccacctttcat |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50962393 |
aagaaggaatgaacacaaccatccaataataatcagcaatctcttgatcggtaagataaaaagcaccaggaatcaaatccgaataagagccacctttcat |
50962492 |
T |
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| Q |
119 |
tcctatttctatcgattgaattttccgaacgcaaaacggtctcttcccatcgctaccgggaaacactatcttcaaactaataaccgtagaaacaatgatt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50962493 |
tcctatttctatcgattgaattttccgaacgcaaaacggtctcttcccatcgctaccgggaaacactatcttcaaactaataaccgtagaaacaatgatt |
50962592 |
T |
|
| Q |
219 |
gcaagccaaattatagccacagaagaaattgtcactggtctttgaagcttgccccaagctttttgttcttctc |
291 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50962593 |
gcaagccaaattatagccacaaaagaaattgtcactggtctttgaagcttgccccaagctttttgttcttctc |
50962665 |
T |
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