View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8341_low_14 (Length: 298)
Name: NF8341_low_14
Description: NF8341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8341_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-138; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 12 - 279
Target Start/End: Original strand, 6609602 - 6609869
Alignment:
| Q |
12 |
agcagagatccatcacatccctatgtaacacaaaaatgaaataacaaatcaacacataatattattaaagaataattttaacgatctaacggtatattaa |
111 |
Q |
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| T |
6609602 |
agcacagatccttcacatccctatgtaacacaaaaatgaaataacaaatcaacacataatattattaaagaataattttaacgatccaacggtatattaa |
6609701 |
T |
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| Q |
112 |
ttgacagtgtaaacaatcatggaaatgaagagacttaattacattgacaaaacaatcatggaaatgaaggcgcaagagagaagcagcaatccttgagtca |
211 |
Q |
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| T |
6609702 |
ttgacagtgtaaaaaataatggaaatgaagagacttaattacattgacaaaacaatcatggaaatgaaggcgcaagagagaagcagcaatccttgagtca |
6609801 |
T |
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| Q |
212 |
ttagctatagctgacaagatattatttttaacaattctgttcaggtttggacaagttctaatgtagaa |
279 |
Q |
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| T |
6609802 |
ttagctatagctgacaagatattatttttaacaattctgttcaggtttggacaagttctaatgtagaa |
6609869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 145 - 283
Target Start/End: Original strand, 6602220 - 6602358
Alignment:
| Q |
145 |
cttaattacattgacaaaacaatcatggaaatgaaggcgcaagagagaagcagcaatccttgagtcattagctatagctgacaagatattatttttaaca |
244 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| | ||||||| |
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| T |
6602220 |
cttaattacattaacaaaacaatcatggaaatgaaggcgcaagagagaagcagcaatcctagaatcattagctatagctgacaagatattgtctttaaca |
6602319 |
T |
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| Q |
245 |
attctgttcaggtttggacaagttctaatgtagaaattg |
283 |
Q |
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| T |
6602320 |
attttgttcagatttggacaagttctgttatagaaattg |
6602358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 6602100 - 6602143
Alignment:
| Q |
12 |
agcagagatccatcacatccctatgtaacacaaaaatgaaataa |
55 |
Q |
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| T |
6602100 |
agcacagatccatcacatccctatgtaacacaaaaatgaaataa |
6602143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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