View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8341_low_17 (Length: 253)
Name: NF8341_low_17
Description: NF8341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8341_low_17 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 154; Significance: 9e-82; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 31679680 - 31679896
Alignment:
| Q |
1 |
aaaaatcttaagatgttaagtatacgagtcatct--tttgtatatat-----attttacacattcataaatgattaaccactcacacttgaaaccaataa |
93 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
31679680 |
aaaaaccttaagatgttaagtatacgagtcatctaatttgtatatattcaacattttacacattcataaatgattaatcattcacacttgaaaccaataa |
31679779 |
T |
|
| Q |
94 |
aaatattgctcttcgaattagtcattccgatagttgtagacatgagctttgaattaagtaattttt-aaagtgaccaattgattgttaatgttgtgctta |
192 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||||||||| |
|
|
| T |
31679780 |
aaatattgctcttcaaattagtcattccgatagttgtagacatgagctttgaattaagtaatttttgaaagtgaccaatcggttgttaatgttgtgctta |
31679879 |
T |
|
| Q |
193 |
atggttgaatgagtgag |
209 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
31679880 |
atggttgaatgagtgag |
31679896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University