View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8341_low_18 (Length: 253)
Name: NF8341_low_18
Description: NF8341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8341_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 136; Significance: 5e-71; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 103 - 242
Target Start/End: Original strand, 10447468 - 10447607
Alignment:
| Q |
103 |
atagtagattgcaagttttggattcagccacccccttgaaaggagtcctaatctggctacaacaaactataaagaaaaacttaatcaaacaaactaaagc |
202 |
Q |
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| T |
10447468 |
atagtagattgcaagttttggattcagccacccccttgaaaggagtcctaatctggctacaacaaactataaagagaaacttaatcaaacaaactaaagc |
10447567 |
T |
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| Q |
203 |
ccatgtcatcgtcactttcttccttggcttcctccttctt |
242 |
Q |
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| T |
10447568 |
ccatgtcatcgtcactttcttccttggcttcctccttctt |
10447607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 64 - 114
Target Start/End: Original strand, 10447405 - 10447455
Alignment:
| Q |
64 |
atcaacaacacatactcatataaaacaatttataaagagatagtagattgc |
114 |
Q |
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| T |
10447405 |
atcaacaacacatactcatgtaaaacaatttataaagagatagtagattgc |
10447455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 114 - 238
Target Start/End: Original strand, 42319951 - 42320074
Alignment:
| Q |
114 |
caagttttggattcagccacccccttgaaaggagtcctaatctggctacaacaaactataaagaaaaacttaatcaaacaaactaaagcccatgtcatcg |
213 |
Q |
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| T |
42319951 |
caagttttggattcagccactcc-ttgaaaggagtcctaatctggctacaacaaactataaagagaaacctagtcaaacaaactaaagcccatgtcatcg |
42320049 |
T |
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| Q |
214 |
tcactttcttccttggcttcctcct |
238 |
Q |
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| T |
42320050 |
tcactttcttccttggcttcctcct |
42320074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 114 - 242
Target Start/End: Complemental strand, 27900153 - 27900026
Alignment:
| Q |
114 |
caagttttggattcagccacccccttgaaaggagtcctaatctggctacaacaaactataaagaaaaacttaatcaaacaaactaaagcccatgtcatcg |
213 |
Q |
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||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||| |
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| T |
27900153 |
caagttttggattaagccactcc-ttgaaaggagtcctaatctggctacaacaaactataaagagaaacctagtcaaacaaactaaagcccatgtcatcg |
27900055 |
T |
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| Q |
214 |
tcactttcttccttggcttcctccttctt |
242 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
27900054 |
tcactttcttccttggcttcctccttctt |
27900026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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