View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8341_low_19 (Length: 250)
Name: NF8341_low_19
Description: NF8341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8341_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 20 - 237
Target Start/End: Complemental strand, 18557630 - 18557413
Alignment:
| Q |
20 |
gtccctcctcaaaggcccaatcatcaactcggttaatacccttgctgcttcgtggagaccaaatcaacccttctatcatcccactgaacttgtttatctt |
119 |
Q |
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| T |
18557630 |
gtccctcctcaaaggcccaatcatcaactcggttaatacccttgctgcttcgtggagaccaaatcaacccttctatcatcccactgaacttgtttatctt |
18557531 |
T |
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| Q |
120 |
atctcccaagatcgatagctccctccatcctctttgaccacgcatcatctcatccactcttagaaaagcttgttgaagagatgttcctatatctccttca |
219 |
Q |
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| T |
18557530 |
atctcccaagatcgatagctccctccatcctctttgaccacgcatcatctcatccactcttagaaaagcttgttgaagagatgttcctatatctccttca |
18557431 |
T |
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| Q |
220 |
tgaccatcataaacacca |
237 |
Q |
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| T |
18557430 |
tgaccatcataaacacca |
18557413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 23 - 175
Target Start/End: Complemental strand, 48833802 - 48833650
Alignment:
| Q |
23 |
cctcctcaaaggcccaatcatcaactcggttaatacccttgctgcttcgtggagaccaaatcaacccttctatcatcccactgaacttgtttatcttatc |
122 |
Q |
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| T |
48833802 |
cctcctcaaaggcccaatcatcaactcggttaataccattgctgcttcgtggagaccaaatcaacccttctatcatcccactgaacttgtttatcttatc |
48833703 |
T |
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| Q |
123 |
tcccaagatcgatagctccctccatcctctttgaccacgcatcatctcatcca |
175 |
Q |
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| T |
48833702 |
tcccaagattgatagctccctccatcctctttgaccacgcatcatctcatcca |
48833650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 215
Target Start/End: Complemental strand, 48833135 - 48833098
Alignment:
| Q |
178 |
cttagaaaagcttgttgaagagatgttcctatatctcc |
215 |
Q |
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| T |
48833135 |
cttagaaaagcttgttgaagagaggttcctatatctcc |
48833098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 65 - 175
Target Start/End: Complemental strand, 3079658 - 3079548
Alignment:
| Q |
65 |
tgcttcgtggagaccaaatcaacccttctatcatcccactgaacttgtttatcttatctcccaagatcgatagctccctccatcctctttgaccacgcat |
164 |
Q |
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| T |
3079658 |
tgcttcttggagaccgaatcaatccttcaattattccattgaacccttttaccttatcacctaagactgctaattccctccatcccctttgaccacgcat |
3079559 |
T |
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| Q |
165 |
catctcatcca |
175 |
Q |
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| T |
3079558 |
catctcatcca |
3079548 |
T |
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