View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8341_low_20 (Length: 236)
Name: NF8341_low_20
Description: NF8341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8341_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 34684995 - 34685129
Alignment:
| Q |
1 |
aaagaaaaagttttgaaatagtgacataacacagtagtgggtgggcctaagaaggtccaaaactt-acnnnnnnnntagaaaattgtatgaattcaaaca |
99 |
Q |
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| T |
34684995 |
aaagaaaaagttttgaaatagtgacataccacagtagtggatgggcctaagaaggtccaaaacttgaaaaaaaagaaaaaaaattgtatgaattcaaaca |
34685094 |
T |
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| Q |
100 |
tgtgattcaatgcctatttagtttagttagtattt |
134 |
Q |
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| T |
34685095 |
tgtgattcaatgcctatttagtttagttagtattt |
34685129 |
T |
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Target: chr3; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 139 - 236
Target Start/End: Original strand, 34685269 - 34685366
Alignment:
| Q |
139 |
aaaatagttagactcgtaaggatttcgccttttaaaaaagtatatgttagagtgagtttaaaaagaaagtgttcataatactcctctttaattatact |
236 |
Q |
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|||||||||||| ||| |||| ||||| || ||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
34685269 |
aaaatagttagaatcgcaagggtttcgactaataaaaaagtctatattagagtgagtttaaaaagaaagtgttcataacactcctctttaattatact |
34685366 |
T |
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