View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8341_low_4 (Length: 454)

Name: NF8341_low_4
Description: NF8341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8341_low_4
NF8341_low_4
[»] chr1 (28 HSPs)
chr1 (165-427)||(21187111-21187371)
chr1 (19-165)||(21186921-21187066)
chr1 (256-421)||(7564851-7565016)
chr1 (278-424)||(22817737-22817883)
chr1 (272-425)||(18271988-18272142)
chr1 (272-425)||(18276642-18276796)
chr1 (278-425)||(22335163-22335311)
chr1 (275-409)||(17385033-17385167)
chr1 (272-412)||(29946959-29947099)
chr1 (272-422)||(3475530-3475681)
chr1 (279-425)||(5750055-5750202)
chr1 (289-416)||(14270189-14270315)
chr1 (318-425)||(10313351-10313459)
chr1 (256-422)||(6605872-6606039)
chr1 (298-425)||(12525167-12525295)
chr1 (272-425)||(39597933-39598086)
chr1 (272-425)||(30518360-30518515)
chr1 (272-354)||(50890258-50890340)
chr1 (332-422)||(29250478-29250570)
chr1 (340-425)||(7199738-7199824)
chr1 (272-425)||(14587611-14587766)
chr1 (275-364)||(44757861-44757950)
chr1 (278-329)||(50262286-50262337)
chr1 (258-315)||(49851414-49851472)
chr1 (396-425)||(33801203-33801232)
chr1 (396-425)||(37952141-37952170)
chr1 (397-425)||(27216646-27216674)
chr1 (397-425)||(52632619-52632647)
[»] chr5 (17 HSPs)
chr5 (256-425)||(38984067-38984236)
chr5 (278-425)||(5344001-5344149)
chr5 (272-416)||(29047293-29047438)
chr5 (273-418)||(41616289-41616433)
chr5 (278-425)||(1711478-1711626)
chr5 (295-422)||(24856177-24856305)
chr5 (274-383)||(31471772-31471881)
chr5 (272-425)||(16513861-16514016)
chr5 (335-425)||(32746623-32746714)
chr5 (275-425)||(18808697-18808849)
chr5 (278-425)||(6432671-6432818)
chr5 (332-425)||(27948367-27948462)
chr5 (395-425)||(25977393-25977423)
chr5 (395-425)||(27114144-27114174)
chr5 (395-425)||(37030516-37030546)
chr5 (396-425)||(12784995-12785024)
chr5 (396-424)||(12723512-12723540)
[»] chr2 (17 HSPs)
chr2 (277-421)||(34906063-34906207)
chr2 (307-425)||(34948237-34948356)
chr2 (254-425)||(5939339-5939512)
chr2 (281-425)||(16739645-16739790)
chr2 (295-425)||(45526058-45526188)
chr2 (278-425)||(43333542-43333690)
chr2 (280-425)||(15113603-15113748)
chr2 (331-425)||(17230132-17230226)
chr2 (335-425)||(24168293-24168382)
chr2 (278-422)||(5464646-5464791)
chr2 (275-425)||(18963069-18963219)
chr2 (338-425)||(15257385-15257473)
chr2 (256-315)||(18137294-18137354)
chr2 (340-422)||(41961481-41961564)
chr2 (272-371)||(16414033-16414134)
chr2 (396-425)||(30490948-30490977)
chr2 (396-425)||(38707482-38707511)
[»] chr3 (24 HSPs)
chr3 (278-425)||(9126756-9126904)
chr3 (278-425)||(9134863-9135011)
chr3 (272-425)||(21980160-21980313)
chr3 (272-425)||(22002591-22002744)
chr3 (272-425)||(49440529-49440683)
chr3 (272-425)||(18875751-18875904)
chr3 (272-425)||(21450422-21450576)
chr3 (289-425)||(49327575-49327712)
chr3 (298-425)||(9116890-9117016)
chr3 (272-425)||(33186524-33186678)
chr3 (281-423)||(8486770-8486913)
chr3 (272-425)||(47374987-47375141)
chr3 (272-425)||(44207850-44208002)
chr3 (265-425)||(26982586-26982746)
chr3 (395-425)||(3733787-3733817)
chr3 (395-425)||(6936316-6936346)
chr3 (261-418)||(16481098-16481256)
chr3 (395-425)||(41174659-41174689)
chr3 (280-424)||(53393674-53393820)
chr3 (396-425)||(10509489-10509518)
chr3 (396-425)||(36402977-36403006)
chr3 (396-425)||(41193984-41194013)
chr3 (396-425)||(47646756-47646785)
chr3 (397-425)||(2182926-2182954)
[»] chr8 (10 HSPs)
chr8 (272-422)||(11991-12142)
chr8 (272-377)||(20091282-20091388)
chr8 (295-425)||(24830498-24830628)
chr8 (335-425)||(4258974-4259065)
chr8 (272-369)||(29544121-29544218)
chr8 (272-350)||(37098113-37098191)
chr8 (272-372)||(41834575-41834675)
chr8 (395-425)||(23144370-23144400)
chr8 (340-424)||(23421212-23421297)
chr8 (395-427)||(627220-627252)
[»] chr6 (8 HSPs)
chr6 (272-425)||(34949251-34949405)
chr6 (278-425)||(13036617-13036765)
chr6 (272-425)||(29435817-29435971)
chr6 (338-425)||(12305343-12305432)
chr6 (278-425)||(480044-480191)
chr6 (275-354)||(31318247-31318326)
chr6 (395-425)||(9305225-9305255)
chr6 (261-354)||(31271053-31271146)
[»] chr7 (11 HSPs)
chr7 (272-424)||(26791715-26791868)
chr7 (277-425)||(37998394-37998543)
chr7 (280-424)||(38257695-38257840)
chr7 (272-425)||(15032803-15032957)
chr7 (278-425)||(7255661-7255809)
chr7 (279-425)||(35585322-35585469)
chr7 (275-354)||(43457905-43457984)
chr7 (283-425)||(108434-108576)
chr7 (341-425)||(29332542-29332627)
chr7 (343-418)||(43749460-43749536)
chr7 (395-424)||(25529372-25529401)
[»] chr4 (30 HSPs)
chr4 (254-425)||(17646895-17647067)
chr4 (278-425)||(16684506-16684654)
chr4 (282-422)||(47985944-47986085)
chr4 (278-425)||(40693242-40693390)
chr4 (326-425)||(13721119-13721219)
chr4 (272-425)||(52417201-52417355)
chr4 (335-425)||(38990912-38991003)
chr4 (272-425)||(51888828-51888982)
chr4 (329-425)||(45659774-45659871)
chr4 (321-425)||(53511293-53511398)
chr4 (256-354)||(16451634-16451733)
chr4 (260-354)||(38551603-38551698)
chr4 (278-424)||(53269128-53269274)
chr4 (278-421)||(44107863-44108007)
chr4 (261-354)||(35320230-35320324)
chr4 (272-372)||(11647586-11647686)
chr4 (272-423)||(35158433-35158587)
chr4 (395-425)||(4047978-4048008)
chr4 (395-425)||(16451776-16451806)
chr4 (395-425)||(38218535-38218565)
chr4 (274-377)||(45924321-45924426)
chr4 (261-418)||(55614117-55614275)
chr4 (396-425)||(16023714-16023743)
chr4 (396-425)||(28781038-28781067)
chr4 (396-425)||(30003452-30003481)
chr4 (396-425)||(43842145-43842174)
chr4 (396-425)||(45029288-45029317)
chr4 (272-353)||(45458056-45458137)
chr4 (396-425)||(51538486-51538515)
chr4 (396-425)||(56463909-56463938)
[»] scaffold0168 (1 HSPs)
scaffold0168 (278-425)||(11924-12072)
[»] scaffold1301 (1 HSPs)
scaffold1301 (396-425)||(1502-1531)


Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-109; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 165 - 427
Target Start/End: Original strand, 21187111 - 21187371
Alignment:
Q  165 aatgtgtcatcaaggtataatggtcttaaatcttggtagtaatgattgaatgaggattaaatgaagcctatggctttttcttcttcttgttgagatttac 264  Q
    ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  21187111 aatgtgtcatcaaggtataatggtcttaaatcttgataataatgattgaatgaggattaaatgaagcctatggccttttcttcttcttgtggagatttac 21187210  T
Q  265 ttttacc-ccctgctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaa 363  Q
    |||| || ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||    
T  21187211 ttttcccaccctgctgccttctcgcgcgccatgcaaaagttccaaaaataccattagtctggattacgttttccgaaccaaattgttagtgtttcctgaa 21187310  T
Q  364 aataaaattcggacgcatacaatatgaaatattgtgtctttctttgatgtcaagggtctctgct 427  Q
    ||||||||||||||||||||||||||||  ||||||| ||||||||||||||| ||||||||||    
T  21187311 aataaaattcggacgcatacaatatgaa--attgtgtatttctttgatgtcaa-ggtctctgct 21187371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 19 - 165
Target Start/End: Original strand, 21186921 - 21187066
Alignment:
Q  19 atagacaaagaaatgaaaaagatgttggcttttgttcttcatctaaatatgggaatattacggtatggaaggatcgataagagagacttagacgacaaga 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||    
T  21186921 atagacaaagaaatgaaaaagatgttggcttttgttcttcatctaaatatggga-tattacggtatggaaggatcgataagagaaacttagacgacaaga 21187019  T
Q  119 tctctcaggtacgatctgactttcgttccatacacccttaatcacta 165  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  21187020 tctctcaggtacgatctgactttcgttccatacacccttaatcacta 21187066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 256 - 421
Target Start/End: Complemental strand, 7565016 - 7564851
Alignment:
Q  256 gagatttacttttacc-ccctgctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtg 354  Q
    ||||||||||||| || ||||||||||||||| |||||  ||||||| ||||||||||| | |||||| ||||||||||||||| |||||||||||||||    
T  7565016 gagatttacttttcccaccctgctgccttctcgcgcgctttgcaaaaattccaaaaatatccttggtccggattacgttttccggaccagattgttagtg 7564917  T
Q  355 tttcctgaaaataaaattcggacgcatacaatatgaaatattgtgtctttctttgatgtcaagggtc 421  Q
    ||||  ||||||||||| || |||||| | ||||||||| |||||||||||||||||||||||||||    
T  7564916 tttctggaaaataaaatccgtacgcatgcgatatgaaat-ttgtgtctttctttgatgtcaagggtc 7564851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 278 - 424
Target Start/End: Complemental strand, 22817883 - 22817737
Alignment:
Q  278 tgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaattcggac 377  Q
    ||||||||| |||||| ||||||||| |||| ||||||   ||| |||||| ||||||| |||||||||||||||||||||| ||||||||||| |||||    
T  22817883 tgccttctcgcgcgccctgcaaaagtcccaataataccccaggtttggatttcgttttctgaaccagattgttagtgtttccggaaaataaaatccggac 22817784  T
Q  378 gcatacaatatgaaatattgtgtctttctttgatgtcaagggtctct 424  Q
    |||||   |||||||| |||||| |||||||||||||||||||||||    
T  22817783 gcatatgctatgaaattttgtgtttttctttgatgtcaagggtctct 22817737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 272 - 425
Target Start/End: Original strand, 18271988 - 18272142
Alignment:
Q  272 ccctgctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaat 371  Q
    ||||| ||||||||| ||||||  |||||| ||||| ||||||| ||||||| ||||| ||  |||| |||||||||||||||||||| ||| ||| |||    
T  18271988 ccctgttgccttctcgcgcgcccagcaaaaattccataaatacccttggtctagattatgtaatccggaccagattgttagtgtttccggaatatataat 18272087  T
Q  372 tcggacgcatacaatatgaa-atattgtgtctttctttgatgtcaagggtctctg 425  Q
     |||||  |||| ||||||| || |||||||||||||||||||||||||||||||    
T  18272088 ccggacaaatacgatatgaatattttgtgtctttctttgatgtcaagggtctctg 18272142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 272 - 425
Target Start/End: Original strand, 18276642 - 18276796
Alignment:
Q  272 ccctgctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaat 371  Q
    ||||| ||||||||| ||||||  |||||| ||||| ||||||| ||||||| ||||| ||  |||| |||||||||||||||||||| ||| ||| |||    
T  18276642 ccctgttgccttctcgcgcgcccagcaaaaattccataaatacccttggtctagattatgtaatccggaccagattgttagtgtttccggaatatataat 18276741  T
Q  372 tcggacgcatacaatatgaa-atattgtgtctttctttgatgtcaagggtctctg 425  Q
     |||||  |||| ||||||| || |||||||||||||||||||||||||||||||    
T  18276742 ccggacaaatacgatatgaatattttgtgtctttctttgatgtcaagggtctctg 18276796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 278 - 425
Target Start/End: Complemental strand, 22335311 - 22335163
Alignment:
Q  278 tgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaattcggac 377  Q
    ||||||||| |||||| ||||||| ||| | |||||||  ||||| |||||||||  |||| |||||||||||||||||||| ||| ||| ||| |||||    
T  22335311 tgccttctcgcgcgccctgcaaaaattctataaatacccctggtccggattacgtaatccggaccagattgttagtgtttccggaatatataatccggac 22335212  T
Q  378 gcatacaatatgaa-atattgtgtctttctttgatgtcaagggtctctg 425  Q
      |||||||||||| || || ||||||||||||||||||||||||||||    
T  22335211 aaatacaatatgaatattttctgtctttctttgatgtcaagggtctctg 22335163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 275 - 409
Target Start/End: Complemental strand, 17385167 - 17385033
Alignment:
Q  275 tgctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaattcg 374  Q
    |||||||||||| | ||||||||| || |||||| |||||| |||||  | ||| |||||| ||||||||||||||||||||| | ||||||||||| ||    
T  17385167 tgctgccttctcgcacgccatgcagaaattccaataatacccttggttcgaatttcgtttttcgaaccagattgttagtgttttcagaaaataaaatccg 17385068  T
Q  375 gacgcatacaatatgaaatattgtgtctttctttg 409  Q
    ||||||| |  ||||||||  ||||||||||||||    
T  17385067 gacgcatgcgctatgaaattgtgtgtctttctttg 17385033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 272 - 412
Target Start/End: Complemental strand, 29947099 - 29946959
Alignment:
Q  272 ccctgctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaat 371  Q
    ||||| ||||||||| |||||| ||||||| ||||| |||||||  ||||| |||||||||  |||| |||||||||||||||||||| ||| ||| |||    
T  29947099 ccctgttgccttctcgcgcgccctgcaaaaattccataaatacccatggtc-ggattacgtaatccggaccagattgttagtgtttccggaatatataat 29947001  T
Q  372 tcggacgcatacaatatgaa-atattgtgtctttctttgatg 412  Q
    ||||||  |||| ||||||| || ||||||||||||||||||    
T  29947000 tcggacaaatacgatatgaatattttgtgtctttctttgatg 29946959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 272 - 422
Target Start/End: Complemental strand, 3475681 - 3475530
Alignment:
Q  272 ccctgctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaat 371  Q
    ||||| ||||||||| || ||| | ||||| ||||| |||||||  || || |||||||||  |||| |||||||||||||||||||| ||| ||| |||    
T  3475681 ccctgttgccttctcgcgtgccctacaaaaattccataaatacccctgatccggattacgtaatccggaccagattgttagtgtttccagaatatataat 3475582  T
Q  372 tcggacgcatacaatatgaa-atattgtgtctttctttgatgtcaagggtct 422  Q
    ||||||  |||| ||||||| || || |||||||||||||||||||||||||    
T  3475581 tcggacaaatacgatatgaatattttttgtctttctttgatgtcaagggtct 3475530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 279 - 425
Target Start/End: Complemental strand, 5750202 - 5750055
Alignment:
Q  279 gccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaattcggacg 378  Q
    ||||||||  ||||| ||||||| |||||||||||||  ||||| |||||||||  |||| ||||||||||||||||||||  || ||| ||| | |||     
T  5750202 gccttctcgggcgccctgcaaaaattccaaaaatacccctggtccggattacgtaatccggaccagattgttagtgtttccgtaatatataatccagaca 5750103  T
Q  379 catacaatatgaa-atattgtgtctttctttgatgtcaagggtctctg 425  Q
     |||| ||||||| || ||||||||||||||||||| |||||||||||    
T  5750102 aatacgatatgaatattttgtgtctttctttgatgtaaagggtctctg 5750055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 289 - 416
Target Start/End: Original strand, 14270189 - 14270315
Alignment:
Q  289 gcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaattcggacgcatacaatat 388  Q
    ||||| ||||||| ||||| |||||||  ||||| |||||||||  |||| |||||||||||||||||||| ||| ||| ||| |||||  |||| ||||    
T  14270189 gcgccctgcaaaaattccataaatacctctggtccggattacgtaatccggaccagattgttagtgtttccggaatatataatccggacaaatacgatat 14270288  T
Q  389 gaaatattgtgtctttctttgatgtcaa 416  Q
    | ||||||||||||||||||||||||||    
T  14270289 g-aatattgtgtctttctttgatgtcaa 14270315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 318 - 425
Target Start/End: Complemental strand, 10313459 - 10313351
Alignment:
Q  318 tggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaattcggacgcatacaatatgaa-atattgtgtctttctttgatgtcaa 416  Q
    |||||| ||||||||  |||| |||||||||||||||||||| ||| ||| ||| |||||  |||| ||||||| || ||||||||||||||||||| ||    
T  10313459 tggtctagattacgtaatccggaccagattgttagtgtttccggaatatataatccggacaaatacgatatgaatattttgtgtctttctttgatgttaa 10313360  T
Q  417 gggtctctg 425  Q
    |||||||||    
T  10313359 gggtctctg 10313351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 256 - 422
Target Start/End: Complemental strand, 6606039 - 6605872
Alignment:
Q  256 gagatttacttttacc-ccctgctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtg 354  Q
    ||||||||||||| || |||||| || ||||| ||| || |  |||| || ||| ||||||  ||||| |||||  ||||||| ||||||||||||||||    
T  6606039 gagatttacttttcccaccctgccgctttctcgcgcaccctataaaaatttcaataatacccctggtccggatttagttttccaaaccagattgttagtg 6605940  T
Q  355 tttcctgaaaataaaattcggacgcatacaatatgaa-atattgtgtctttctttgatgtcaagggtct 422  Q
    ||||| ||||||||||| |||||  ||||  |||||| || |||| ||||||||||||||||| |||||    
T  6605939 tttccggaaaataaaatccggacaaatacgttatgaatattttgt-tctttctttgatgtcaatggtct 6605872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 298 - 425
Target Start/End: Complemental strand, 12525295 - 12525167
Alignment:
Q  298 aaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaattcggacgcatacaatatgaa-atatt 396  Q
    |||| ||||| |||||||  ||||| |||||||||  |||| |||| ||||||||||||||| ||| ||| ||| | |||  |||| ||||||| || |     
T  12525295 aaaaattccataaatacccctggtccggattacgtaatccggaccaaattgttagtgtttccggaatatataatccagacaaatacgatatgaatatttg 12525196  T
Q  397 gtgtctttctttgatgtcaagggtctctg 425  Q
    |||||||||||||||||||||||||||||    
T  12525195 gtgtctttctttgatgtcaagggtctctg 12525167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 272 - 425
Target Start/End: Original strand, 39597933 - 39598086
Alignment:
Q  272 ccctgctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaat 371  Q
    ||||| |||||||||||||||| | ||||| ||||| |||||||  ||  | |||||||||  |||| ||||||||||||||||||||  || ||| |||    
T  39597933 ccctgttgccttctcacgcgccctacaaaa-ttccataaatacccctgagccggattacgtaatccggaccagattgttagtgtttccataatatataat 39598031  T
Q  372 tcggacgcatacaatatgaa-atattgtgtctttctttgatgtcaagggtctctg 425  Q
      ||||  |||| ||||||| || ||||||||||| |||||||||| ||||||||    
T  39598032 ctggacaaatacgatatgaatattttgtgtctttcgttgatgtcaaaggtctctg 39598086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 272 - 425
Target Start/End: Complemental strand, 30518515 - 30518360
Alignment:
Q  272 ccctgctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtg-tttcctgaaaataaaa 370  Q
    ||||||||||||||||||| || || |||| | |||||| |||| ||||| ||||||   |||||||||||| |||||||||| ||| | ||   |||||    
T  30518515 ccctgctgccttctcacgcaccctgaaaaaatgccaaaattacccttggtttggattttattttccgaaccacattgttagtgattttcggattttaaaa 30518416  T
Q  371 ttcggacgcatacaatatgaaatatt-gtgtctttctttgatgtcaagggtctctg 425  Q
    | |||||     ||||||||||| || |||||||| ||||||||||||||||||||    
T  30518415 tccggacaacgtcaatatgaaattttagtgtctttttttgatgtcaagggtctctg 30518360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 272 - 354
Target Start/End: Original strand, 50890258 - 50890340
Alignment:
Q  272 ccctgctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtg 354  Q
    ||||||||||||||||| |||| ||||||| || |||||||||   |||||  ||||  ||||||||||||||||||||||||    
T  50890258 ccctgctgccttctcacacgccctgcaaaaatttcaaaaatactcctggtccagattttgttttccgaaccagattgttagtg 50890340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 332 - 422
Target Start/End: Original strand, 29250478 - 29250570
Alignment:
Q  332 ttttccgaaccagattgttagtg-tttcctgaaaataaaattcggacgcatacaatatgaaatatt-gtgtctttctttgatgtcaagggtct 422  Q
    |||| |||||||||||||||||| ||||| |||| |||||| |||||  |||  ||||||||| || ||||||||||||||||| ||||||||    
T  29250478 tttttcgaaccagattgttagtgatttccggaaactaaaatccggacaaatatgatatgaaatttttgtgtctttctttgatgttaagggtct 29250570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 425
Target Start/End: Complemental strand, 7199824 - 7199738
Alignment:
Q  340 accagattgttagtgtttcctgaaaataaaattcggacgcatacaatatgaa-atattgtgtctttctttgatgtcaagggtctctg 425  Q
    |||||||||||||||||||| ||| ||| ||| |  ||  |||| ||||||| || |||||||||||||||||||||| ||||||||    
T  7199824 accagattgttagtgtttccagaatatataatccaaacaaatacgatatgaatattttgtgtctttctttgatgtcaatggtctctg 7199738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 272 - 425
Target Start/End: Complemental strand, 14587766 - 14587611
Alignment:
Q  272 ccctgctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtg-tttcctgaaaataaaa 370  Q
    ||||||||||||||||||| || ||||||| || | ||||||||  ||||| ||||||| |  |||| | ||||||||||||| ||||| ||||   |||    
T  14587766 ccctgctgccttctcacgcaccctgcaaaatttactaaaatacccatggtccggattacataatccggatcagattgttagtgatttccggaaacagaaa 14587667  T
Q  371 ttcggacgcatacaatatgaaatat--tgtgtctttctttgatgtcaagggtctctg 425  Q
    | ||||| || |   |||| ||| |  ||||||||||||||||||||||||||||||    
T  14587666 tccggac-cagatgttatgtaattttctgtgtctttctttgatgtcaagggtctctg 14587611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 275 - 364
Target Start/End: Complemental strand, 44757950 - 44757861
Alignment:
Q  275 tgctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaa 364  Q
    |||||||||||| |||||| ||||||| || || |||||||  | ||   ||||||||  ||||||||||||||||||||||||| ||||    
T  44757950 tgctgccttctcgcgcgccctgcaaaaatttcataaatacccctagttcagattacgtaatccgaaccagattgttagtgtttccggaaa 44757861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 278 - 329
Target Start/End: Complemental strand, 50262337 - 50262286
Alignment:
Q  278 tgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggatta 329  Q
    |||||||||||||||| ||||||| |||||||||||||  | ||||||||||    
T  50262337 tgccttctcacgcgccctgcaaaatttccaaaaatacccctagtctggatta 50262286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 258 - 315
Target Start/End: Original strand, 49851414 - 49851472
Alignment:
Q  258 gatttacttttacc-ccctgctgccttctcacgcgccatgcaaaagttccaaaaatacc 315  Q
    ||||||||||| || ||||||||||||||| |||||| | ||||| |||||||||||||    
T  49851414 gatttacttttcccaccctgctgccttctcgcgcgcccttcaaaatttccaaaaatacc 49851472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 425
Target Start/End: Original strand, 33801203 - 33801232
Alignment:
Q  396 tgtgtctttctttgatgtcaagggtctctg 425  Q
    ||||||||||||||||||||||||||||||    
T  33801203 tgtgtctttctttgatgtcaagggtctctg 33801232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 425
Target Start/End: Original strand, 37952141 - 37952170
Alignment:
Q  396 tgtgtctttctttgatgtcaagggtctctg 425  Q
    ||||||||||||||||||||||||||||||    
T  37952141 tgtgtctttctttgatgtcaagggtctctg 37952170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 397 - 425
Target Start/End: Original strand, 27216646 - 27216674
Alignment:
Q  397 gtgtctttctttgatgtcaagggtctctg 425  Q
    |||||||||||||||||||||||||||||    
T  27216646 gtgtctttctttgatgtcaagggtctctg 27216674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 397 - 425
Target Start/End: Complemental strand, 52632647 - 52632619
Alignment:
Q  397 gtgtctttctttgatgtcaagggtctctg 425  Q
    |||||||||||||||||||||||||||||    
T  52632647 gtgtctttctttgatgtcaagggtctctg 52632619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 99; Significance: 1e-48; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 256 - 425
Target Start/End: Original strand, 38984067 - 38984236
Alignment:
Q  256 gagatttacttttacc-ccctgctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtg 354  Q
    |||||||| |||| || ||||| |||||||||||||||| ||||||| ||||||||||||| ||| || |||||||||||||||||||||||||||||||    
T  38984067 gagatttaattttcccaccctgttgccttctcacgcgccctgcaaaaattccaaaaatacc-ttgatccggattacgttttccgaaccagattgttagtg 38984165  T
Q  355 tttcctgaaaataaaattcggacgcatacaatatgaaatattgtgtctttctttgatgtcaagggtctctg 425  Q
    ||||| |||| ||||||  | |||||||||||||||||| ||||||||||||||||||||||| |||||||    
T  38984166 tttccagaaagtaaaatctgaacgcatacaatatgaaattttgtgtctttctttgatgtcaagagtctctg 38984236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 278 - 425
Target Start/End: Complemental strand, 5344149 - 5344001
Alignment:
Q  278 tgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaattcggac 377  Q
    ||||||||| |||||| ||||||| ||||| |||||||  ||||| |||||||||  |||| |||||||||||||||||||| ||| ||| ||| |||||    
T  5344149 tgccttctcgcgcgccctgcaaaaattccataaatacccctggtccggattacgtaatccggaccagattgttagtgtttccagaatatataatccggac 5344050  T
Q  378 gcatacaatatgaa-atattgtgtctttctttgatgtcaagggtctctg 425  Q
      |||| ||||||| || |||||||||||||||||||||||||||||||    
T  5344049 aaatacgatatgaatattttgtgtctttctttgatgtcaagggtctctg 5344001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 272 - 416
Target Start/End: Complemental strand, 29047438 - 29047293
Alignment:
Q  272 ccctgctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaat 371  Q
    ||||| ||||||||| |||||| ||||||| |||||||||||||  ||||| ||||||||| ||||| ||||||||| ||||||||||  || ||| |||    
T  29047438 ccctgttgccttctcgcgcgccctgcaaaaattccaaaaatacccctggtccggattacgtattccggaccagattgctagtgtttccgaaacatataat 29047339  T
Q  372 tcggacgcatacaatatgaa-atattgtgtctttctttgatgtcaa 416  Q
    ||||||  ||||||||| || || ||||||||||||||||||||||    
T  29047338 tcggacaaatacaatataaatattttgtgtctttctttgatgtcaa 29047293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 273 - 418
Target Start/End: Complemental strand, 41616433 - 41616289
Alignment:
Q  273 cctgctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaatt 372  Q
    ||||||||||||||| ||||| ||||||| |||||| ||||||  || || |||||||||||| ||||| ||||||||||||||||| |||| |||||||    
T  41616433 cctgctgccttctcatgcgccttgcaaaaattccaataatacccctgatccggattacgtttttcgaacaagattgttagtgtttcc-gaaattaaaatt 41616335  T
Q  373 cggacgcatacaatatgaaatattgtgtctttctttgatgtcaagg 418  Q
     |||||||||| ||||  |||  |||||||||| ||||||||||||    
T  41616334 tggacgcatacgatatctaattgtgtgtctttcattgatgtcaagg 41616289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 278 - 425
Target Start/End: Complemental strand, 1711626 - 1711478
Alignment:
Q  278 tgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaattcggac 377  Q
    |||||||||||||||| ||||||| || || |||||||  ||||| |||||||||  || | ||||||||||||||||||   ||| ||| ||| |||||    
T  1711626 tgccttctcacgcgccctgcaaaaatttcataaatacccctggtccggattacgtaatcaggaccagattgttagtgtttttggaatatataatccggac 1711527  T
Q  378 gcatacaatatgaa-atattgtgtctttctttgatgtcaagggtctctg 425  Q
      |||| ||||||| || |||||||||||||||||||||||||||||||    
T  1711526 aaatacgatatgaatattttgtgtctttctttgatgtcaagggtctctg 1711478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 295 - 422
Target Start/End: Complemental strand, 24856305 - 24856177
Alignment:
Q  295 tgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaattcggacgcatacaatatgaa-at 393  Q
    ||||||| ||||| |||||||| |||||  ||||||||  |||| |||||||||||||||||||| ||| ||| ||| |||||  |||| ||||||| ||    
T  24856305 tgcaaaaattccataaataccactggtccagattacgtaatccggaccagattgttagtgtttccggaatatataatccggacaaatacgatatgaatat 24856206  T
Q  394 attgtgtctttctttgatgtcaagggtct 422  Q
     |||||||||| |||||||||||||||||    
T  24856205 tttgtgtctttttttgatgtcaagggtct 24856177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 274 - 383
Target Start/End: Complemental strand, 31471881 - 31471772
Alignment:
Q  274 ctgctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaattc 373  Q
    ||||||||||||| |||||| || |||| ||||| ||||| |  ||||| | |||| |||||||||||||||||||||||||||   |||||||||||      
T  31471881 ctgctgccttctcgcgcgccttgaaaaaattccacaaatatccctggtccgaattatgttttccgaaccagattgttagtgtttttggaaaataaaatct 31471782  T
Q  374 ggacgcatac 383  Q
    ||||||||||    
T  31471781 ggacgcatac 31471772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 272 - 425
Target Start/End: Complemental strand, 16514016 - 16513861
Alignment:
Q  272 ccctgctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaata-aaa 370  Q
    ||||||||||||||| |||||| ||||||| ||||||||||||| ||| || ||||||| |  |||| | ||||||||||||| ||   ||||| | |||    
T  16514016 ccctgctgccttctcgcgcgccctgcaaaatttccaaaaatacctttgatccggattacataatccggatcagattgttagtgattttcgaaaacagaaa 16513917  T
Q  371 ttcggacgcatacaatatgaaatat--tgtgtctttctttgatgtcaagggtctctg 425  Q
    | ||||| ||||   |||| ||| |  ||||||||||||||||||||||||||||||    
T  16513916 tccggac-catatgttatgtaattttctgtgtctttctttgatgtcaagggtctctg 16513861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 335 - 425
Target Start/End: Original strand, 32746623 - 32746714
Alignment:
Q  335 tccgaaccagattgttagtgtttcctgaaaataaaattcggacgcatacaatatgaa-atattgtgtctttctttgatgtcaagggtctctg 425  Q
    |||| |||||||||||||||||||| ||| ||| ||  |||||  |||| ||||||  || |||||||||||||||||||||||||||||||    
T  32746623 tccggaccagattgttagtgtttccggaatatataacccggacaaatacgatatgagtattttgtgtctttctttgatgtcaagggtctctg 32746714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 275 - 425
Target Start/End: Original strand, 18808697 - 18808849
Alignment:
Q  275 tgctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaata-aaattc 373  Q
    |||||||| |||||||||| ||||||| || | |||||||| ||||||  |||||| |  |||| | ||||||||||||| || ||| ||||| ||||||    
T  18808697 tgctgcctcctcacgcgccctgcaaaatttactaaaatacccttggtccagattacataatccggatcagattgttagtgatttctggaaatagaaattc 18808796  T
Q  374 ggacgcatacaatatgaaatat--tgtgtctttctttgatgtcaagggtctctg 425  Q
    |||| || |   |||| ||| |  ||||||||||||||||||||||||||||||    
T  18808797 ggac-cagatgttatgtaatttcctgtgtctttctttgatgtcaagggtctctg 18808849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 278 - 425
Target Start/End: Complemental strand, 6432818 - 6432671
Alignment:
Q  278 tgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaattcggac 377  Q
    ||||||||| |||| | ||||||| || ||||| ||||  |||| |||||| ||| | ||| |||| ||||||||||||||| ||| | | ||| | |||    
T  6432818 tgccttctcgcgcgtcctgcaaaaatttcaaaactacccctggtatggatttcgtat-ccggaccaaattgttagtgtttccggaacagataatccagac 6432720  T
Q  378 gcatacaatatgaa-atattgtgtctttctttgatgtcaagggtctctg 425  Q
      |||| ||||||| || ||||||||||||| |||||||||||||||||    
T  6432719 aaatacgatatgaatattttgtgtctttcttcgatgtcaagggtctctg 6432671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 332 - 425
Target Start/End: Original strand, 27948367 - 27948462
Alignment:
Q  332 ttttccgaaccagattgttagtgtttcctgaaaa-taaaattcggacgcatacaatatgaaatatt-gtgtctttctttgatgtcaagggtctctg 425  Q
    |||||||||| |||||||||||||||   ||||| |||||||| ||   |||| ||||||||| || |||||||||||||||||||| ||||||||    
T  27948367 ttttccgaactagattgttagtgttttgcgaaaactaaaattcagaaaaatacgatatgaaatttttgtgtctttctttgatgtcaaaggtctctg 27948462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 395 - 425
Target Start/End: Complemental strand, 25977423 - 25977393
Alignment:
Q  395 ttgtgtctttctttgatgtcaagggtctctg 425  Q
    |||||||||||||||||||||||||||||||    
T  25977423 ttgtgtctttctttgatgtcaagggtctctg 25977393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 395 - 425
Target Start/End: Original strand, 27114144 - 27114174
Alignment:
Q  395 ttgtgtctttctttgatgtcaagggtctctg 425  Q
    |||||||||||||||||||||||||||||||    
T  27114144 ttgtgtctttctttgatgtcaagggtctctg 27114174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 395 - 425
Target Start/End: Complemental strand, 37030546 - 37030516
Alignment:
Q  395 ttgtgtctttctttgatgtcaagggtctctg 425  Q
    |||||||||||||||||||||||||||||||    
T  37030546 ttgtgtctttctttgatgtcaagggtctctg 37030516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 425
Target Start/End: Original strand, 12784995 - 12785024
Alignment:
Q  396 tgtgtctttctttgatgtcaagggtctctg 425  Q
    ||||||||||||||||||||||||||||||    
T  12784995 tgtgtctttctttgatgtcaagggtctctg 12785024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 396 - 424
Target Start/End: Original strand, 12723512 - 12723540
Alignment:
Q  396 tgtgtctttctttgatgtcaagggtctct 424  Q
    |||||||||||||||||||||||||||||    
T  12723512 tgtgtctttctttgatgtcaagggtctct 12723540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 89; Significance: 1e-42; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 277 - 421
Target Start/End: Original strand, 34906063 - 34906207
Alignment:
Q  277 ctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaattcgga 376  Q
    |||||||||| || ||| |||||||  |||||||||||   ||||| ||||||| |||||||||||||||||||||||||||| ||||||||||| ||||    
T  34906063 ctgccttctcgcgtgccctgcaaaaaatccaaaaatactcctggtccggattaccttttccgaaccagattgttagtgtttccggaaaataaaatccgga 34906162  T
Q  377 cgcatacaatatgaaatattgtgtctttctttgatgtcaagggtc 421  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||    
T  34906163 cgcatacgatatgaaattttgtgtctttctttgatgtcaagggtc 34906207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 307 - 425
Target Start/End: Original strand, 34948237 - 34948356
Alignment:
Q  307 aaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaattcggacgcatacaatatgaa-atattgtgtctttc 405  Q
    ||||||| | |||||| |||||||||||||||||||||||||||||| ||||| ||||||| ||| |  |||||||||||||||| || |||||||||||    
T  34948237 aaaaatatctttggtccggattacgttttccgaaccagattgttagtatttccggaaaatacaatccaaacgcatacaatatgaatattttgtgtctttc 34948336  T
Q  406 tttgatgtcaagggtctctg 425  Q
    ||||||||||||||||||||    
T  34948337 tttgatgtcaagggtctctg 34948356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 254 - 425
Target Start/End: Complemental strand, 5939512 - 5939339
Alignment:
Q  254 ttgagatttacttttacc-ccctgctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttag 352  Q
    ||||||||||||||| |  ||||| || ||||||||| ||||||||||| ||| |||||||||  | ||  ||||||||||||||||| |||||||||||    
T  5939512 ttgagatttacttttcctaccctgttgtcttctcacgtgccatgcaaaaattcgaaaaatacccctagttcggattacgttttccgaatcagattgttag 5939413  T
Q  353 tgtttcctgaaaataaaattcggacgcatacaatatgaa-atattgtgtctttctttgatgtcaagggtctctg 425  Q
     |||||| ||||||| ||| || || ||||| ||||||| || |||||||||||||||||||||||||| ||||    
T  5939412 ggtttccggaaaatacaatccgaacacatacgatatgaatattttgtgtctttctttgatgtcaagggtttctg 5939339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 281 - 425
Target Start/End: Complemental strand, 16739790 - 16739645
Alignment:
Q  281 cttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaattcggacgca 380  Q
    |||||| |||| | ||||||| ||||||||||||   |||| ||| ||||||||| |||||||||| |||||||||||| ||||| |||||  |||||||    
T  16739790 cttctcgcgcgtcctgcaaaaattccaaaaatacacctggtttggtttacgtttttcgaaccagatagttagtgtttccggaaaagaaaatctggacgca 16739691  T
Q  381 tacaatatgaaatattgtgtctttctttgatgtc-aagggtctctg 425  Q
    |||  |||||||| |||||||||||||||||||| |||||||||||    
T  16739690 tacgctatgaaattttgtgtctttctttgatgtcaaagggtctctg 16739645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 295 - 425
Target Start/End: Original strand, 45526058 - 45526188
Alignment:
Q  295 tgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaattcggacgcatacaatatgaaata 394  Q
    ||||||| |||||| |||| | |||||  ||||| ||||||| ||||||||||||||||||||||  ||||||||||  ||||||||||  |||||||      
T  45526058 tgcaaaaattccaataatatctttggttcggatttcgttttctgaaccagattgttagtgtttccgaaaaataaaatctggacgcatacgctatgaaagt 45526157  T
Q  395 ttgtgtctttctttgatgtcaagggtctctg 425  Q
    |||||||||||||||| ||||||||||||||    
T  45526158 ttgtgtctttctttgaagtcaagggtctctg 45526188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 278 - 425
Target Start/End: Original strand, 43333542 - 43333690
Alignment:
Q  278 tgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaattcggac 377  Q
    ||||||||| |||| | ||||||| ||||| ||||||   ||||| |||||||||  ||||  ||||||||||||||||||| ||| ||| ||| |||||    
T  43333542 tgccttctcgcgcgtcctgcaaaaattccataaatactcctggtccggattacgtaatccgggccagattgttagtgtttccggaatatataatccggac 43333641  T
Q  378 gcatacaatatgaa-atattgtgtctttctttgatgtcaagggtctctg 425  Q
      |||||||||||| || |||||||||||||||||||||||||||||||    
T  43333642 aaatacaatatgaatattttgtgtctttctttgatgtcaagggtctctg 43333690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 280 - 425
Target Start/End: Complemental strand, 15113748 - 15113603
Alignment:
Q  280 ccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaattcggacgc 379  Q
    ||||||| ||| || ||||||| ||||||||||| |  ||||| |||||| || ||||  |||||||||||||||||||| ||| ||| ||| ||||       
T  15113748 ccttctcgcgcaccctgcaaaa-ttccaaaaatagccctggtcaggattatgtattccagaccagattgttagtgtttccggaacatataatccggaaaa 15113650  T
Q  380 atacaatatgaa-atattgtgtctttctttgatgtcaagggtctctg 425  Q
    |||| ||||||| || |||||||||||||||||||||||||||||||    
T  15113649 atacgatatgaatattttgtgtctttctttgatgtcaagggtctctg 15113603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 331 - 425
Target Start/End: Original strand, 17230132 - 17230226
Alignment:
Q  331 gttttccgaaccagattgttagtgtttcctgaaaataaaattcggacgcatacaatatgaaatattgtgtctttctttgatgtcaagggtctctg 425  Q
    ||||| |||||||||||||||| |||| | ||||||||||| || ||  |||| ||||||||  |||||||||||||||||||||| ||||||||    
T  17230132 gtttttcgaaccagattgttagagttttcagaaaataaaatccgaacatatacgatatgaaaagttgtgtctttctttgatgtcaaaggtctctg 17230226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 335 - 425
Target Start/End: Original strand, 24168293 - 24168382
Alignment:
Q  335 tccgaaccagattgttagtgtttcctgaaaataaaattcggacgcatacaatatgaaatattgtgtctttctttgatgtcaagggtctctg 425  Q
    ||||||||||||||||||||||||| |||| || ||| | |||  |||| ||||||| |||| ||||||||||||||||||||||||||||    
T  24168293 tccgaaccagattgttagtgtttccggaaactacaatccagacaaatacgatatgaa-tattttgtctttctttgatgtcaagggtctctg 24168382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 278 - 422
Target Start/End: Complemental strand, 5464791 - 5464646
Alignment:
Q  278 tgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaattcggac 377  Q
    ||||||||| |||||  ||||||| || || |||||||  ||||| |||||| ||  || | |||| ||||||||||||||| ||| ||| ||| |||||    
T  5464791 tgccttctcgcgcgctctgcaaaaatttcataaatacccctggtccggattatgtaatctggaccaaattgttagtgtttccggaatatataatccggac 5464692  T
Q  378 gcatacaatatgaa-atattgtgtctttctttgatgtcaagggtct 422  Q
      |||| ||||||| || ||||||||||||||||||||||||||||    
T  5464691 aaatacgatatgaatattttgtgtctttctttgatgtcaagggtct 5464646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 275 - 425
Target Start/End: Original strand, 18963069 - 18963219
Alignment:
Q  275 tgctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaa-taaaattc 373  Q
    |||||||||||||||||||  |||||| ||| |||||||||  ||||  |||||   |||| |||||||||||||||||  || ||| ||| ||||||||    
T  18963069 tgctgccttctcacgcgcc--gcaaaaattctaaaaatacccctggttcggattttatttttcgaaccagattgttagttctttctggaaactaaaattc 18963166  T
Q  374 ggacgcatacaatatgaaatatt-gtgtctttctttgatgtcaagggtctctg 425  Q
    |||    ||| ||||||||| || |||||||||||||||||||||||||||||    
T  18963167 ggaaaattacgatatgaaatttttgtgtctttctttgatgtcaagggtctctg 18963219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 338 - 425
Target Start/End: Complemental strand, 15257473 - 15257385
Alignment:
Q  338 gaaccagattgttagtgtttcctgaaaataaaattcggacgcatacaatatgaa-atattgtgtctttctttgatgtcaagggtctctg 425  Q
    |||||||||||||||||||| | ||||| |||||||||||  |  | ||||||| || |||||||||||||||||||||| ||| ||||    
T  15257473 gaaccagattgttagtgttttcggaaaagaaaattcggactaaatcgatatgaatattttgtgtctttctttgatgtcaaaggtttctg 15257385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 256 - 315
Target Start/End: Original strand, 18137294 - 18137354
Alignment:
Q  256 gagatttacttttacc-ccctgctgccttctcacgcgccatgcaaaagttccaaaaatacc 315  Q
    ||||||||||||| || ||||||||||||||| |||||| ||||||| |||||||||||||    
T  18137294 gagatttacttttcccaccctgctgccttctcgcgcgccttgcaaaatttccaaaaatacc 18137354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 340 - 422
Target Start/End: Original strand, 41961481 - 41961564
Alignment:
Q  340 accagattgttagtgtttcctgaaaataaaattcggacgcatacaatatgaa-atattgtgtctttctttgatgtcaagggtct 422  Q
    |||||||||||||||||||| ||| ||| ||| |||||  |||| ||||||| || |||| |||||||||||||| ||||||||    
T  41961481 accagattgttagtgtttccggaatatataatccggacaaatacgatatgaatattttgtatctttctttgatgttaagggtct 41961564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 272 - 371
Target Start/End: Original strand, 16414033 - 16414134
Alignment:
Q  272 ccctgctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctg-gattacgttttccgaaccagattgttagtg-tttcctgaaaataaa 369  Q
    |||||||| ||||||||||||| ||||||| |||||||||||||  ||||| |  |||   |||| |||||||||||||||||| ||||| |||| ||||    
T  16414033 ccctgctgtcttctcacgcgccttgcaaaaattccaaaaatacctctggtccgaaattttatttttcgaaccagattgttagtgctttccggaaactaaa 16414132  T
Q  370 at 371  Q
    ||    
T  16414133 at 16414134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 425
Target Start/End: Complemental strand, 30490977 - 30490948
Alignment:
Q  396 tgtgtctttctttgatgtcaagggtctctg 425  Q
    ||||||||||||||||||||||||||||||    
T  30490977 tgtgtctttctttgatgtcaagggtctctg 30490948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 425
Target Start/End: Complemental strand, 38707511 - 38707482
Alignment:
Q  396 tgtgtctttctttgatgtcaagggtctctg 425  Q
    ||||||||||||||||||||||||||||||    
T  38707511 tgtgtctttctttgatgtcaagggtctctg 38707482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 3e-33; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 278 - 425
Target Start/End: Original strand, 9126756 - 9126904
Alignment:
Q  278 tgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaattcggac 377  Q
    ||||| ||| |||||| ||||||| ||||||||||||| |||||| ||||||||| |||||||||||||||||||||||||| ||| ||| ||| | | |    
T  9126756 tgcctactcgcgcgccctgcaaaaattccaaaaatacccttggtccggattacgtattccgaaccagattgttagtgtttccggaatatataatccagtc 9126855  T
Q  378 gcatacaatatgaa-atattgtgtctttctttgatgtcaagggtctctg 425  Q
      |||| ||||||| || |||||||||||||||||||||||||||||||    
T  9126856 aaatacgatatgaatattttgtgtctttctttgatgtcaagggtctctg 9126904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 278 - 425
Target Start/End: Original strand, 9134863 - 9135011
Alignment:
Q  278 tgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaattcggac 377  Q
    ||||| ||| |||||| ||||||| ||||||||||||| |||||| ||||||||| |||||||||||||||||||||||||| ||| ||| ||| | | |    
T  9134863 tgcctactcgcgcgccctgcaaaaattccaaaaatacccttggtccggattacgtattccgaaccagattgttagtgtttccggaatatataatccagtc 9134962  T
Q  378 gcatacaatatgaa-atattgtgtctttctttgatgtcaagggtctctg 425  Q
      |||| ||||||| || |||||||||||||||||||||||||||||||    
T  9134963 aaatacgatatgaatattttgtgtctttctttgatgtcaagggtctctg 9135011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 272 - 425
Target Start/End: Complemental strand, 21980313 - 21980160
Alignment:
Q  272 ccctgctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaat 371  Q
    ||||||| ||||||| |||||| ||||||| |||| | |||| |  ||||| ||||| ||||||||||||||||||||||| |||| | |||| ||||||    
T  21980313 ccctgctaccttctcgcgcgccctgcaaaaattcctataatatccatggtccggatttcgttttccgaaccagattgttagagttttcggaaattaaaat 21980214  T
Q  372 tcggacgcatacaatatgaaatattgtgtctttctttgatgtcaagggtctctg 425  Q
     |||||||||||  |||||||| || ||| |||||||||||| |||||||||||    
T  21980213 ccggacgcatacgttatgaaattttatgtttttctttgatgttaagggtctctg 21980160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 272 - 425
Target Start/End: Complemental strand, 22002744 - 22002591
Alignment:
Q  272 ccctgctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaat 371  Q
    ||||||| ||||||| |||||| ||||||| |||| | |||| |  ||||| ||||| ||||||||||||||||||||||| |||| | |||| ||||||    
T  22002744 ccctgctaccttctcgcgcgccctgcaaaaattcctataatatccatggtccggatttcgttttccgaaccagattgttagagttttcggaaattaaaat 22002645  T
Q  372 tcggacgcatacaatatgaaatattgtgtctttctttgatgtcaagggtctctg 425  Q
     |||||||||||  |||||||| || ||| |||||||||||| |||||||||||    
T  22002644 ccggacgcatacgttatgaaattttatgtttttctttgatgttaagggtctctg 22002591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 272 - 425
Target Start/End: Complemental strand, 49440683 - 49440529
Alignment:
Q  272 ccctgctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaat 371  Q
    ||||| ||||||||| |||||| ||||||| || || |||||||  ||||| |||||||||  |||| |||||||||||||||| ||| ||| ||| |||    
T  49440683 ccctgttgccttctcgcgcgccctgcaaaaatttcataaatacctctggtccggattacgtaatccggaccagattgttagtgtatccggaatatataat 49440584  T
Q  372 tcggacgcatacaatatgaa-atattgtgtctttctttgatgtcaagggtctctg 425  Q
     |||||  |||| ||||||| || |||||||||||||||||||||||||||||||    
T  49440583 ccggacaaatacgatatgaatattttgtgtctttctttgatgtcaagggtctctg 49440529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 272 - 425
Target Start/End: Original strand, 18875751 - 18875904
Alignment:
Q  272 ccctgctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaat 371  Q
    ||||||||||||||| | |||| | ||||| |||| | |||  | |||||||||||| | |||| |||||||||||||||| ||| || |||| ||||||    
T  18875751 ccctgctgccttctcgcacgccctccaaaatttcctataatttccttggtctggatttcatttttcgaaccagattgttagagttaccggaaattaaaat 18875850  T
Q  372 tcggacgcatacaatatgaaatattgtgtctttctttgatgtcaagggtctctg 425  Q
     |||||||||||| |||||||| |||||| || ||||||||| |||||||||||    
T  18875851 ccggacgcatacactatgaaattttgtgttttgctttgatgttaagggtctctg 18875904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 272 - 425
Target Start/End: Complemental strand, 21450576 - 21450422
Alignment:
Q  272 ccctgctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaat 371  Q
    ||||| ||||||||| |||||| ||||||| ||||| |||||    ||||| |||||||||  |||  |||||||||||||||||||| ||| ||| |||    
T  21450576 ccctgttgccttctcgcgcgccttgcaaaaattccataaatatatctggtccggattacgtaatccataccagattgttagtgtttccagaatatataat 21450477  T
Q  372 tcggacgcatacaatatgaa-atattgtgtctttctttgatgtcaagggtctctg 425  Q
     |||||  |||| ||||||| || |||||||||||||||||||||||||||||||    
T  21450476 ccggacaaatacgatatgaatattttgtgtctttctttgatgtcaagggtctctg 21450422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 289 - 425
Target Start/End: Complemental strand, 49327712 - 49327575
Alignment:
Q  289 gcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaattcggacgcatacaatat 388  Q
    ||||| ||||||| ||||| ||||| | |||||||| |||||||  |||| |||||||||||| ||||| | ||| ||| |||||||||  |||| ||||    
T  49327712 gcgccctgcaaaaattccataaatatccttggtctgaattacgtaatccggaccagattgttattgttttcggaatatataattcggacaaatacgatat 49327613  T
Q  389 gaa-atattgtgtctttctttgatgtcaagggtctctg 425  Q
    ||| || |||||||||||||||||||||||||||||||    
T  49327612 gaatattttgtgtctttctttgatgtcaagggtctctg 49327575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 298 - 425
Target Start/End: Original strand, 9116890 - 9117016
Alignment:
Q  298 aaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaattcggacgcatacaatatgaaatattg 397  Q
    |||| |||||||||||||  ||||| ||||||||| |||||||||||||||||||||||||  ||| ||| ||| ||| |  |||| ||||| |||||||    
T  9116890 aaaaattccaaaaatacccctggtccggattacgtattccgaaccagattgttagtgtttctggaatatataatccggtcaaatacgatatg-aatattg 9116988  T
Q  398 tgtctttctttgatgtcaagggtctctg 425  Q
    ||  ||||||||||||||||||||||||    
T  9116989 tgcatttctttgatgtcaagggtctctg 9117016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 272 - 425
Target Start/End: Original strand, 33186524 - 33186678
Alignment:
Q  272 ccctgctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaat 371  Q
    ||||| ||||||||| |||||| ||||||| ||| | ||||| |  || ||||||||||||  ||||||||||||||| ||||||||| ||| ||| |||    
T  33186524 ccctgttgccttctcgcgcgccctgcaaaaattctataaatatccctgatctggattacgtaatccgaaccagattgtcagtgtttccggaatatataat 33186623  T
Q  372 tcggacgcatacaatatgaa-atattgtgtctttctttgatgtcaagggtctctg 425  Q
     || ||  |||| ||||||| || ||||||||||||||||| |||||||||||||    
T  33186624 ccgaacaaatacgatatgaatattttgtgtctttctttgatatcaagggtctctg 33186678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 281 - 423
Target Start/End: Complemental strand, 8486913 - 8486770
Alignment:
Q  281 cttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaattcggacgca 380  Q
    |||||| |||||||||||||| || ||||| |||   ||||| ||||| ||| |  || ||||||||||||||||||||  || | | |||||||||  |    
T  8486913 cttctcgcgcgccatgcaaaaatttcaaaattactcctggtccggatttcgtatagcggaccagattgttagtgtttccgaaacaaataattcggacaaa 8486814  T
Q  381 tacaatatgaa-atattgtgtctttctttgatgtcaagggtctc 423  Q
    ||||||||||| || |||||||||||||||||||||||||||||    
T  8486813 tacaatatgaatattttgtgtctttctttgatgtcaagggtctc 8486770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 272 - 425
Target Start/End: Complemental strand, 47375141 - 47374987
Alignment:
Q  272 ccctgctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaat 371  Q
    ||||| ||||||||| |||||| | ||||| || || ||||||   ||||| | |||||||  |||| |||||||||| ||||||||| ||| ||| |||    
T  47375141 ccctgatgccttctcgcgcgcccttcaaaaatttcataaatacacctggtccgaattacgtaatccggaccagattgtaagtgtttccggaatatataat 47375042  T
Q  372 tcggacgcatacaatatgaa-atattgtgtctttctttgatgtcaagggtctctg 425  Q
     |||||  |||| ||||||| || |||||||||||||||| || |||||||||||    
T  47375041 ccggacaaatacgatatgaatattttgtgtctttctttgacgttaagggtctctg 47374987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 272 - 425
Target Start/End: Complemental strand, 44208002 - 44207850
Alignment:
Q  272 ccctgctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaat 371  Q
    ||||| ||||||||| |||||| ||||||| ||||| |||||||  ||||  |||||| ||  ||   |||||||||||||||||||| ||| ||| | |    
T  44208002 ccctgttgccttctcgcgcgccctgcaaaaattccataaatacctctggttcggattatgtaatcttgaccagattgttagtgtttccggaatatatagt 44207903  T
Q  372 tcggacgcatacaatatgaaatattgtgtctttctttgatgtcaagggtctctg 425  Q
     | |||   ||| ||||| |||||| ||||||||||||||||||||||||||||    
T  44207902 ccagacaagtacgatatg-aatattttgtctttctttgatgtcaagggtctctg 44207850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 265 - 425
Target Start/End: Complemental strand, 26982746 - 26982586
Alignment:
Q  265 ttttaccccctgctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaa 364  Q
    |||||| |||| ||| ||||||||||||| | ||||| || ||||||||||  |||||  ||||   |||||| |||||||||||||||| || | |||     
T  26982746 ttttacaccctactgtcttctcacgcgccctacaaaaatttcaaaaatacctctggtccagattt--ttttccaaaccagattgttagtgctttccgaat 26982649  T
Q  365 at-aaaattcggacgcatacaatatgaaatatt-gtgtctttctttgatgtcaagggtctctg 425  Q
     | ||||||||||   |  | ||||||||| || |||||||||||||||||||||||||||||    
T  26982648 tttaaaattcggaaaaaatcgatatgaaatttttgtgtctttctttgatgtcaagggtctctg 26982586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 395 - 425
Target Start/End: Complemental strand, 3733817 - 3733787
Alignment:
Q  395 ttgtgtctttctttgatgtcaagggtctctg 425  Q
    |||||||||||||||||||||||||||||||    
T  3733817 ttgtgtctttctttgatgtcaagggtctctg 3733787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 395 - 425
Target Start/End: Original strand, 6936316 - 6936346
Alignment:
Q  395 ttgtgtctttctttgatgtcaagggtctctg 425  Q
    |||||||||||||||||||||||||||||||    
T  6936316 ttgtgtctttctttgatgtcaagggtctctg 6936346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 261 - 418
Target Start/End: Original strand, 16481098 - 16481256
Alignment:
Q  261 ttacttttaccccctgctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcct 360  Q
    |||||||| | ||||| || |||||| |||||| || |||| ||||| |||||||  |||||  ||||||||  || | ||||||||||||||||||       
T  16481098 ttacttttccaccctgttgtcttctcgcgcgccttgtaaaaattccataaatacccctggtccagattacgtaatctggaccagattgttagtgtttatg 16481197  T
Q  361 gaaaataaaattcggacgcatacaatatgaa-atattgtgtctttctttgatgtcaagg 418  Q
    ||| ||  ||| |||||   ||| |||| || || ||||||||||||||||||||||||    
T  16481198 gaatatgtaatccggacaactacgatataaatattttgtgtctttctttgatgtcaagg 16481256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 395 - 425
Target Start/End: Original strand, 41174659 - 41174689
Alignment:
Q  395 ttgtgtctttctttgatgtcaagggtctctg 425  Q
    |||||||||||||||||||||||||||||||    
T  41174659 ttgtgtctttctttgatgtcaagggtctctg 41174689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 280 - 424
Target Start/End: Original strand, 53393674 - 53393820
Alignment:
Q  280 ccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaat-aaaattcggacg 378  Q
    |||||||||||||| ||||||| ||| ||||||||   ||||| |||| |  |||| |||||||||||||||||| || ||| |  | ||||| | |||     
T  53393674 ccttctcacgcgccctgcaaaaattctaaaaatactcctggtccggatcatatttttcgaaccagattgttagtgctttctggattttaaaatccagaca 53393773  T
Q  379 catacaatatgaaatatt-gtgtctttctttgatgtcaagggtctct 424  Q
     |    ||||||||| || ||||||||||||||||||||||||||||    
T  53393774 aaattgatatgaaatttttgtgtctttctttgatgtcaagggtctct 53393820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 425
Target Start/End: Complemental strand, 10509518 - 10509489
Alignment:
Q  396 tgtgtctttctttgatgtcaagggtctctg 425  Q
    ||||||||||||||||||||||||||||||    
T  10509518 tgtgtctttctttgatgtcaagggtctctg 10509489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 425
Target Start/End: Complemental strand, 36403006 - 36402977
Alignment:
Q  396 tgtgtctttctttgatgtcaagggtctctg 425  Q
    ||||||||||||||||||||||||||||||    
T  36403006 tgtgtctttctttgatgtcaagggtctctg 36402977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 425
Target Start/End: Complemental strand, 41194013 - 41193984
Alignment:
Q  396 tgtgtctttctttgatgtcaagggtctctg 425  Q
    ||||||||||||||||||||||||||||||    
T  41194013 tgtgtctttctttgatgtcaagggtctctg 41193984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 425
Target Start/End: Original strand, 47646756 - 47646785
Alignment:
Q  396 tgtgtctttctttgatgtcaagggtctctg 425  Q
    ||||||||||||||||||||||||||||||    
T  47646756 tgtgtctttctttgatgtcaagggtctctg 47646785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 397 - 425
Target Start/End: Original strand, 2182926 - 2182954
Alignment:
Q  397 gtgtctttctttgatgtcaagggtctctg 425  Q
    |||||||||||||||||||||||||||||    
T  2182926 gtgtctttctttgatgtcaagggtctctg 2182954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 1e-32; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 272 - 422
Target Start/End: Complemental strand, 12142 - 11991
Alignment:
Q  272 ccctgctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaat 371  Q
    ||||| ||||||||| |||||| ||||||| ||||| |||||||  |||||||||||||||  |||| |||||||||||||||||||| ||| ||| |||    
T  12142 ccctgttgccttctcgcgcgccctgcaaaaattccataaatacccctggtctggattacgtaatccggaccagattgttagtgtttccggaatatataat 12043  T
Q  372 tcggacgcatacaatatgaa-atattgtgtctttctttgatgtcaagggtct 422  Q
     |||||  |||| ||||||| || ||||||||||||||||||||||||||||    
T  12042 ccggacaaatacgatatgaatattttgtgtctttctttgatgtcaagggtct 11991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 272 - 377
Target Start/End: Original strand, 20091282 - 20091388
Alignment:
Q  272 ccctgctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtg-tttcctgaaaataaaa 370  Q
    ||||||||||||||| |||||| ||||||| |||||||||||||  |||||||||||||||  |||| ||||||||||||||| ||||| |||||| |||    
T  20091282 ccctgctgccttctcgcgcgccctgcaaaatttccaaaaatacccctggtctggattacgtaatccggaccagattgttagtgatttccggaaaattaaa 20091381  T
Q  371 ttcggac 377  Q
    | |||||    
T  20091382 tccggac 20091388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 295 - 425
Target Start/End: Original strand, 24830498 - 24830628
Alignment:
Q  295 tgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaattcggacgcatacaatatgaa-at 393  Q
    ||||||| ||| | |||||||  ||||||| |||||||  | || ||||||||||||||||||| |||| ||| ||| |||||  |||| ||||||| ||    
T  24830498 tgcaaaaattctataaatacctctggtctgaattacgtaattcggaccagattgttagtgtttcttgaatatataatccggacaaatacgatatgaatat 24830597  T
Q  394 attgtgtctttctttgatgtcaagggtctctg 425  Q
     |||||||||||||||||||| ||||||||||    
T  24830598 tttgtgtctttctttgatgtc-agggtctctg 24830628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 335 - 425
Target Start/End: Complemental strand, 4259065 - 4258974
Alignment:
Q  335 tccgaaccagattgttagtgtttcctgaaaataaaattcggacgcatacaatatgaaatatt-gtgtctttctttgatgtcaagggtctctg 425  Q
    ||||||||||||  || |||||||| |||| |||||| | |||  | |||||||| |||||| |||||||||||||||||||||||||||||    
T  4259065 tccgaaccagatgattggtgtttccggaaactaaaatccagacaaaaacaatatgcaatatttgtgtctttctttgatgtcaagggtctctg 4258974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 272 - 369
Target Start/End: Original strand, 29544121 - 29544218
Alignment:
Q  272 ccctgctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaa 369  Q
    |||||||||||||||  ||||| ||||||| |||||||||||||  ||||| | ||||  |  |||| |||||||||||||||||||| |||| ||||    
T  29544121 ccctgctgccttctcgtgcgccctgcaaaatttccaaaaatacccctggtccgaattatataatccggaccagattgttagtgtttccggaaactaaa 29544218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 272 - 350
Target Start/End: Original strand, 37098113 - 37098191
Alignment:
Q  272 ccctgctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgtt 350  Q
    ||||| ||||||||| |||||| ||||||| |||||||||||||  ||||||||||||  |  |||| |||||||||||    
T  37098113 ccctgttgccttctcgcgcgccctgcaaaatttccaaaaatacccatggtctggattatataatccggaccagattgtt 37098191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 272 - 372
Target Start/End: Original strand, 41834575 - 41834675
Alignment:
Q  272 ccctgctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaat 371  Q
    ||||||||||||||  |||||  ||||||| || ||| ||||||  |||   ||||| ||||||  |||||||||||||||||||| | |||||||||||    
T  41834575 ccctgctgccttctagcgcgctctgcaaaaatttcaataatacccctggctcggatttcgttttttgaaccagattgttagtgttttcggaaaataaaat 41834674  T
Q  372 t 372  Q
    |    
T  41834675 t 41834675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 395 - 425
Target Start/End: Complemental strand, 23144400 - 23144370
Alignment:
Q  395 ttgtgtctttctttgatgtcaagggtctctg 425  Q
    |||||||||||||||||||||||||||||||    
T  23144400 ttgtgtctttctttgatgtcaagggtctctg 23144370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 424
Target Start/End: Complemental strand, 23421297 - 23421212
Alignment:
Q  340 accagattgttagtgtttcctgaaaataaaattcggacgcatacaatatgaa-atattgtgtctttctttgatgtcaagggtctct 424  Q
    ||||||||||||||||||||  || ||| ||| || ||  |||| ||||||| || || |||||||||||||||| ||||||||||    
T  23421297 accagattgttagtgtttccgaaatatataatccgaacaaatacgatatgaatattttatgtctttctttgatgttaagggtctct 23421212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 395 - 427
Target Start/End: Original strand, 627220 - 627252
Alignment:
Q  395 ttgtgtctttctttgatgtcaagggtctctgct 427  Q
    |||||||||||||||||||||||||||| ||||    
T  627220 ttgtgtctttctttgatgtcaagggtctttgct 627252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 1e-29; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 272 - 425
Target Start/End: Original strand, 34949251 - 34949405
Alignment:
Q  272 ccctgctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaat 371  Q
    ||||| ||||||||| || ||| ||||||||||||| |||||||  ||||| |||||||||  ||||||||||||||||||||||||| ||| ||| |||    
T  34949251 ccctgttgccttctcgcgtgccctgcaaaagttccataaatacccctggtccggattacgtaatccgaaccagattgttagtgtttccggaatatataat 34949350  T
Q  372 tcggacgcatacaatatgaa-atattgtgtctttctttgatgtcaagggtctctg 425  Q
     |||||  |||| ||||||| || |||||||||||||||| ||||||| ||||||    
T  34949351 ccggacaaatacgatatgaatattttgtgtctttctttgacgtcaaggatctctg 34949405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 278 - 425
Target Start/End: Original strand, 13036617 - 13036765
Alignment:
Q  278 tgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaattcggac 377  Q
    ||||||||| |||||||||||||| || || ||||||| |||||||||||||||| ||||| |||||||||||||||||||| ||  ||| ||| ||||     
T  13036617 tgccttctcgcgcgccatgcaaaaatttcataaatacccttggtctggattacgtattccggaccagattgttagtgtttccggattatataatccggat 13036716  T
Q  378 gcatacaatatgaa-atattgtgtctttctttgatgtcaagggtctctg 425  Q
      |||| ||||||| || |||||||||| ||| ||||||| ||||||||    
T  13036717 aaatacgatatgaatattttgtgtctttttttcatgtcaatggtctctg 13036765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 272 - 425
Target Start/End: Original strand, 29435817 - 29435971
Alignment:
Q  272 ccctgctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaat 371  Q
    ||||| ||||||||| |||||  ||||||| || || |||||||  || || |||||||||  || | |||||||||||||||||||  ||| ||| |||    
T  29435817 ccctgttgccttctcgcgcgctctgcaaaaatttcataaatacccctgatccggattacgtaatctggaccagattgttagtgtttctggaatatataat 29435916  T
Q  372 tcggacgcatacaatatgaa-atattgtgtctttctttgatgtcaagggtctctg 425  Q
     || ||  |||||||||||| || ||||||||||||||||||||||| |||||||    
T  29435917 ccgaacaaatacaatatgaatattttgtgtctttctttgatgtcaagagtctctg 29435971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 338 - 425
Target Start/End: Complemental strand, 12305432 - 12305343
Alignment:
Q  338 gaaccagattgttagtg-tttcctgaaaataaaattcggacgcatacaatatgaaatatt-gtgtctttctttgatgtcaagggtctctg 425  Q
    ||||||||||||||||| ||||| |||| |||||| |||||  |||| ||||||||| || |||||||||||||||||||||||| ||||    
T  12305432 gaaccagattgttagtgatttccggaaactaaaatccggacaaatacgatatgaaatttttgtgtctttctttgatgtcaagggtatctg 12305343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 278 - 425
Target Start/End: Original strand, 480044 - 480191
Alignment:
Q  278 tgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaattcggac 377  Q
    ||||||||| |||||| ||||||| ||||| |||||||  | ||| ||||||| |  |||| |||| ||| ||||||||| | ||| ||| ||| |||||    
T  480044 tgccttctcgcgcgcc-tgcaaaaattccataaatacccctagtccggattacataatccggaccatattattagtgttttcggaatatataatccggac 480142  T
Q  378 gcatacaatatgaa-atattgtgtctttctttgatgtcaagggtctctg 425  Q
      |||  ||||| | || |||||||||||||||||||||||||||||||    
T  480143 aaatatgatatggatattttgtgtctttctttgatgtcaagggtctctg 480191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 275 - 354
Target Start/End: Original strand, 31318247 - 31318326
Alignment:
Q  275 tgctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtg 354  Q
    |||||||||||| || ||| ||||||| |||| ||||||||  ||||| |||||||||  |||| |||||||||||||||    
T  31318247 tgctgccttctcgcgtgccctgcaaaatttccgaaaatacccatggtccggattacgtaatccggaccagattgttagtg 31318326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 395 - 425
Target Start/End: Complemental strand, 9305255 - 9305225
Alignment:
Q  395 ttgtgtctttctttgatgtcaagggtctctg 425  Q
    |||||||||||||||||||||||||||||||    
T  9305255 ttgtgtctttctttgatgtcaagggtctctg 9305225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 354
Target Start/End: Original strand, 31271053 - 31271146
Alignment:
Q  261 ttacttttaccccctgctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtg 354  Q
    |||||||| || |||||||||||||| |||||| ||||||| || | |||||| |  ||||  ||||||| |  |||| |||||||||||||||    
T  31271053 ttacttttcccacctgctgccttctcgcgcgccctgcaaaatttactaaaataaccctggttcggattacataatccggaccagattgttagtg 31271146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 272 - 424
Target Start/End: Original strand, 26791715 - 26791868
Alignment:
Q  272 ccctgctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaat 371  Q
    ||||| ||||||||| |||| | ||||||| ||||| |||||||  |||| ||||||||||  |||  |||||||||||||||||||| ||| ||| |||    
T  26791715 ccctgttgccttctcgcgcgtcctgcaaaaattccataaatacccctggtttggattacgtaatccagaccagattgttagtgtttccggaatatataat 26791814  T
Q  372 tcggacgcatacaatatgaa-atattgtgtctttctttgatgtcaagggtctct 424  Q
     |||||  |||| ||||||| || ||||||||||||||||||||||||||||||    
T  26791815 ccggacaaatacgatatgaatattttgtgtctttctttgatgtcaagggtctct 26791868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 277 - 425
Target Start/End: Original strand, 37998394 - 37998543
Alignment:
Q  277 ctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaattcgga 376  Q
    ||||||||||||| ||| ||||||| ||| |||||||||  ||||||||||||| |  |||| || ||||||||||||||||| ||| ||| ||| ||||    
T  37998394 ctgccttctcacgtgccctgcaaaaattctaaaaatacccctggtctggattacataatccggactagattgttagtgtttccggaatatataatccgga 37998493  T
Q  377 cgcatacaatatgaa-atattgtgtctttctttgatgtcaagggtctctg 425  Q
    |  |||| ||||||| || |||||||||||||||||||||| ||||||||    
T  37998494 caaatacgatatgaatattttgtgtctttctttgatgtcaaaggtctctg 37998543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 280 - 424
Target Start/End: Complemental strand, 38257840 - 38257695
Alignment:
Q  280 ccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaattcggacgc 379  Q
    ||||||| || ||| ||||||| ||||| |||||||  ||||| |||||||||  | || |||||||||||||||||||| ||| ||| ||| |||||      
T  38257840 ccttctcgcgtgccctgcaaaaattccataaatacccctggtccggattacgtaattcggaccagattgttagtgtttccggaatatataatccggacaa 38257741  T
Q  380 atacaatatgaa-atattgtgtctttctttgatgtcaagggtctct 424  Q
    |||| ||||||| || ||||||||||||||||||||||||||||||    
T  38257740 atacgatatgaatattttgtgtctttctttgatgtcaagggtctct 38257695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 272 - 425
Target Start/End: Complemental strand, 15032957 - 15032803
Alignment:
Q  272 ccctgctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaat 371  Q
    ||||| |||||||||  ||||| ||||||| || || |||||||  ||||| |||||||||  |||| |||||||||||||||||| | ||| ||| |||    
T  15032957 ccctgttgccttctcgtgcgccctgcaaaaatttcataaatacccctggtccggattacgtaatccggaccagattgttagtgtttgcagaatatataat 15032858  T
Q  372 tcggacgcatacaatatgaa-atattgtgtctttctttgatgtcaagggtctctg 425  Q
      ||||  |||| | ||||| || |||||||||||||||||||||||||||||||    
T  15032857 atggacaaatacgacatgaatattttgtgtctttctttgatgtcaagggtctctg 15032803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 278 - 425
Target Start/End: Complemental strand, 7255809 - 7255661
Alignment:
Q  278 tgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaattcggac 377  Q
    ||||||||| |||||  ||||||| ||||| |||||||  ||||  |||||||||  |||| |||| ||||||||||||| | ||| ||| ||| | |||    
T  7255809 tgccttctcgcgcgctctgcaaaaattccataaatacccctggttcggattacgtaatccggaccaaattgttagtgttttcggaatatataatccagac 7255710  T
Q  378 gcatacaatatgaa-atattgtgtctttctttgatgtcaagggtctctg 425  Q
      |||| ||||||| || |||||| ||||||||||||||||||||||||    
T  7255709 aaatacgatatgaatattttgtgtatttctttgatgtcaagggtctctg 7255661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 279 - 425
Target Start/End: Complemental strand, 35585469 - 35585322
Alignment:
Q  279 gccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaa-ataaaattcggac 377  Q
    |||||||| || ||| ||||||| ||||| ||| |||  ||||| |||||| ||  |||  ||||||||||||||||||| ||||| ||| ||| |||||    
T  35585469 gccttctcgcgtgccctgcaaaaattccataaacacccctggtccggattatgtaatccagaccagattgttagtgtttc-tgaaatatacaatccggac 35585371  T
Q  378 gcatacaatatgaa-atattgtgtctttctttgatgtcaagggtctctg 425  Q
      |||| ||||||| || |||||||||||||||||||||||||| ||||    
T  35585370 aaatacgatatgaatattttgtgtctttctttgatgtcaagggtttctg 35585322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 275 - 354
Target Start/End: Original strand, 43457905 - 43457984
Alignment:
Q  275 tgctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtg 354  Q
    ||||||||||||||||||| ||||||| || |||||||||   ||||| ||||||  | |||||||||||||||||||||    
T  43457905 tgctgccttctcacgcgccctgcaaaattttcaaaaatactcctggtccggattatatattccgaaccagattgttagtg 43457984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 283 - 425
Target Start/End: Original strand, 108434 - 108576
Alignment:
Q  283 tctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaattcggacgcata 382  Q
    |||| |||||| || |||| || || ||||||| || |||  ||||||||  ||||||||||||||||||| ||||  ||| ||| ||| |||||  |||    
T  108434 tctcgcgcgccctgtaaaaatttcataaatacctttagtccagattacgtaatccgaaccagattgttagt-tttctggaatatataatccggacaaata 108532  T
Q  383 caatatgaa-atattgtgtctttctttgatgtcaagggtctctg 425  Q
    | ||||||| || |||||||||| ||||||||||||| ||||||    
T  108533 cgatatgaatattttgtgtctttatttgatgtcaaggatctctg 108576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 341 - 425
Target Start/End: Complemental strand, 29332627 - 29332542
Alignment:
Q  341 ccagattgttagtgtttcctgaaaataaaattcggacgcatacaatatgaa-atattgtgtctttctttgatgtcaagggtctctg 425  Q
    |||||||||||||||||||  || ||| ||| | |||  |||| ||||||| || |||||||||||||| ||||||||||||||||    
T  29332627 ccagattgttagtgtttccgaaatatataatccagacaaatacgatatgaatattttgtgtctttctttaatgtcaagggtctctg 29332542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 343 - 418
Target Start/End: Complemental strand, 43749536 - 43749460
Alignment:
Q  343 agattgttagtgtttcctgaaaataaaattcggacgcatacaatatgaa-atattgtgtctttctttgatgtcaagg 418  Q
    ||||||||||||||||| ||| ||| ||| |||||  |||| ||||||| || |||||||||||||| |||||||||    
T  43749536 agattgttagtgtttccggaatatataatccggacaaatacgatatgaatattttgtgtctttctttaatgtcaagg 43749460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 424
Target Start/End: Complemental strand, 25529401 - 25529372
Alignment:
Q  395 ttgtgtctttctttgatgtcaagggtctct 424  Q
    ||||||||||||||||||||||||||||||    
T  25529401 ttgtgtctttctttgatgtcaagggtctct 25529372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 254 - 425
Target Start/End: Original strand, 17646895 - 17647067
Alignment:
Q  254 ttgagatttacttttaccccc-tgctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttag 352  Q
    ||||||||||||||  || || ||||||||||||||||||| ||||||| || ||| ||||||  ||||| ||||| |||||||| ||||||||| ||||    
T  17646895 ttgagatttactttacccaccatgctgccttctcacgcgccctgcaaaaatttcaataatacccctggtccggatttcgttttccaaaccagatt-ttag 17646993  T
Q  353 tgtttcctgaaaataaaattcggacgcatacaatatgaa-atattgtgtctttctttgatgtcaagggtctctg 425  Q
    ||||| | ||||||||||| | |||||||||  || ||| ||  ||||||||||||| ||||||||||||||||    
T  17646994 tgttttcagaaaataaaatccagacgcatacgctacgaatattatgtgtctttctttaatgtcaagggtctctg 17647067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 278 - 425
Target Start/End: Complemental strand, 16684654 - 16684506
Alignment:
Q  278 tgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaattcggac 377  Q
    ||||||||||||||| |||||||| |||||||| ||||  |||||  |||| ||| ||||  |||||||||||||||||||| ||| | | ||| |||||    
T  16684654 tgccttctcacgcgctatgcaaaaattccaaaattacccctggtccagatttcgtattccataccagattgttagtgtttccggaacagataatccggac 16684555  T
Q  378 gcatacaatatgaa-atattgtgtctttctttgatgtcaagggtctctg 425  Q
      |||| ||||||| || |||||||||||||||||||||||||||||||    
T  16684554 aaatacgatatgaatattttgtgtctttctttgatgtcaagggtctctg 16684506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 282 - 422
Target Start/End: Complemental strand, 47986085 - 47985944
Alignment:
Q  282 ttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaattcggacgcat 381  Q
    ||||| |||||| || |||| ||||| |||||||  ||||| |||||||||  |||| ||||||||||||||| |||| ||| ||| ||| |||||  ||    
T  47986085 ttctcgcgcgccctggaaaaattccataaatacccctggtccggattacgtaatccggaccagattgttagtgcttccggaatatataatccggacaaat 47985986  T
Q  382 acaatatgaa-atattgtgtctttctttgatgtcaagggtct 422  Q
    |||||||||| || ||||||||||||||||||||||||||||    
T  47985985 acaatatgaatattttgtgtctttctttgatgtcaagggtct 47985944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 278 - 425
Target Start/End: Complemental strand, 40693390 - 40693242
Alignment:
Q  278 tgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaattcggac 377  Q
    |||||||||  ||||| || |||| ||||| |||||||  ||||| |||||||||  |||| |||||||||||||||||||| ||| ||| ||| |||||    
T  40693390 tgccttctcgtgcgccttgtaaaaattccataaatacctctggtccggattacgtaatccggaccagattgttagtgtttccggaatatataatccggac 40693291  T
Q  378 gcatacaatatgaa-atattgtgtctttctttgatgtcaagggtctctg 425  Q
      |||| ||||||| || ||||||||||| |||||||||| ||||||||    
T  40693290 aaatacgatatgaatattttgtgtctttccttgatgtcaaaggtctctg 40693242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 326 - 425
Target Start/End: Original strand, 13721119 - 13721219
Alignment:
Q  326 attacgttttccgaaccagattgttagtgtttcctgaaaataaaattcggacgcatacaatatgaa-atattgtgtctttctttgatgtcaagggtctct 424  Q
    |||||||  ||| ||||||||||||||||||||| ||| ||| ||| | |||  |||| ||||||| || ||||||||||||||||||||||||||||||    
T  13721119 attacgtaatccaaaccagattgttagtgtttccggaatatataatccagacaaatacgatatgaatattttgtgtctttctttgatgtcaagggtctct 13721218  T
Q  425 g 425  Q
    |    
T  13721219 g 13721219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 272 - 425
Target Start/End: Complemental strand, 52417355 - 52417201
Alignment:
Q  272 ccctgctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaat 371  Q
    ||||||||||||||| || ||| ||||||| || | ||||||||  ||||| |||||||||  |||| |||||||||||||||||||| ||||   ||||    
T  52417355 ccctgctgccttctcgcgtgccctgcaaaatttactaaaatacccctggtccggattacgtaatccggaccagattgttagtgtttccggaaacagaaat 52417256  T
Q  372 tcggacgcatacaatatgaaa--tattgtgtctttctttgatgtcaagggtctctg 425  Q
     ||||| ||||   |||| ||  | || ||||||||||||||||||||||||||||    
T  52417255 ccggac-catatgttatgtaattttttatgtctttctttgatgtcaagggtctctg 52417201  T

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Target: chr4; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 335 - 425
Target Start/End: Complemental strand, 38991003 - 38990912
Alignment:
Q  335 tccgaaccagattgttagtgtttcctgaaaataaaattcggacgcatacaatatgaa-atattgtgtctttctttgatgtcaagggtctctg 425  Q
    |||| |||||||||||||| |||   ||| ||| |||||||||  |||||||||||| || |||||||||||||||||||||||||||||||    
T  38991003 tccggaccagattgttagtatttatggaatatataattcggacaaatacaatatgaatattttgtgtctttctttgatgtcaagggtctctg 38990912  T

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Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 272 - 425
Target Start/End: Original strand, 51888828 - 51888982
Alignment:
Q  272 ccctgctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaat 371  Q
    ||||| |||||||||   |||| ||||||| || || ||||| | |||||| | |||||||  |||| || ||||||||||||||||| ||| ||| |||    
T  51888828 ccctgttgccttctcgtacgccctgcaaaaatttcataaatatctttggtccgaattacgtaatccggacgagattgttagtgtttccggaatatataat 51888927  T
Q  372 tcggacgcatacaatatgaa-atattgtgtctttctttgatgtcaagggtctctg 425  Q
     |||||  |||| ||||||| || || ||||||||||||||||||| ||||||||    
T  51888928 ccggacaaatacgatatgaatattttttgtctttctttgatgtcaatggtctctg 51888982  T

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Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 329 - 425
Target Start/End: Complemental strand, 45659871 - 45659774
Alignment:
Q  329 acgttttccgaaccagattgttagtgtttcctgaaaataaaattcggacgcatacaatatgaa-atattgtgtctttctttgatgtcaagggtctctg 425  Q
    |||| |||||||||||||||||||||||| | ||| ||| ||| | |||  ||||  |||||| || |||||||||||||||||||||||||||||||    
T  45659871 acgtattccgaaccagattgttagtgttttcggaatatataatccagacaaatacgctatgaatattttgtgtctttctttgatgtcaagggtctctg 45659774  T

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Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 321 - 425
Target Start/End: Original strand, 53511293 - 53511398
Alignment:
Q  321 tctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaattcggacgcatacaatatgaa-atattgtgtctttctttgatgtcaaggg 419  Q
    ||||||||||||  |||| |||||||||||||||||||| ||| ||| ||| |||||  |||| |||| || || |||| | ||||||||||||||||||    
T  53511293 tctggattacgtaatccggaccagattgttagtgtttccggaatatataatccggacaaatacgatattaatattttgtatttttctttgatgtcaaggg 53511392  T
Q  420 tctctg 425  Q
    ||||||    
T  53511393 tctctg 53511398  T

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Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 256 - 354
Target Start/End: Original strand, 16451634 - 16451733
Alignment:
Q  256 gagatttacttttacc-ccctgctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtg 354  Q
    |||| |||||||| || ||||||||||||||| |||||  ||||||| || |||||||||| |||||||||||||  |  |||| |||||||||||||||    
T  16451634 gagaattacttttcccaccctgctgccttctcgcgcgctctgcaaaattttcaaaaatacccttggtctggattatataatccggaccagattgttagtg 16451733  T

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Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 260 - 354
Target Start/End: Complemental strand, 38551698 - 38551603
Alignment:
Q  260 tttacttttacc-ccctgctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtg 354  Q
    ||||||||| || ||||||||||||||| |||||| ||||||| |||||||||||||  ||||| ||||||  |  |||| |||||||||||||||    
T  38551698 tttacttttcccaccctgctgccttctcgcgcgccctgcaaaatttccaaaaatacccctggtccggattatataatccggaccagattgttagtg 38551603  T

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Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 278 - 424
Target Start/End: Original strand, 53269128 - 53269274
Alignment:
Q  278 tgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaattcggac 377  Q
    ||||||||| |||||  || |||| ||||||||||| |  ||||| ||||||||| ||||||| |||||||||||||||||| ||| || | || || ||    
T  53269128 tgccttctcgcgcgctttgtaaaaattccaaaaatatccatggtccggattacgtattccgaatcagattgttagtgtttccggaacat-atatccgaac 53269226  T
Q  378 gcatacaatatgaa-atattgtgtctttctttgatgtcaagggtctct 424  Q
      |||  | ||||| || |||||||||||||||||||||| |||||||    
T  53269227 aaatatgacatgaatatcttgtgtctttctttgatgtcaatggtctct 53269274  T

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Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 278 - 421
Target Start/End: Original strand, 44107863 - 44108007
Alignment:
Q  278 tgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaattcggac 377  Q
    ||||||||| || ||| | ||||| |||||||| || |  |||||||||||  || ||||| |||||||||||||||||| | ||||  | ||| |||||    
T  44107863 tgccttctcgcgtgccctacaaaaattccaaaattatctctggtctggattttgtattccggaccagattgttagtgttttcggaaatgataatccggac 44107962  T
Q  378 gcatacaatatgaa-atattgtgtctttctttgatgtcaagggtc 421  Q
      |||| ||||||| || |||| |||||||||||||| |||||||    
T  44107963 aaatacgatatgaatattttgtatctttctttgatgttaagggtc 44108007  T

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Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 261 - 354
Target Start/End: Complemental strand, 35320324 - 35320230
Alignment:
Q  261 ttacttttaccccct-gctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtg 354  Q
    ||||||||||| ||| | ||||||||| |||||| ||||||| |||||||||||||  ||||| ||||||  |  |||| |||||||||||||||    
T  35320324 ttacttttaccaccttggtgccttctcgcgcgccctgcaaaatttccaaaaatacccctggtccggattatataatccggaccagattgttagtg 35320230  T

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Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 272 - 372
Target Start/End: Original strand, 11647586 - 11647686
Alignment:
Q  272 ccctgctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaat 371  Q
    ||||||||||||||  |||||  ||||||| || ||| ||||||  |||   ||||| ||||||  |||||||||||||||||||| | |||||||||||    
T  11647586 ccctgctgccttctagcgcgctctgcaaaaatttcaataatacccctggctcggatttcgttttttgaaccagattgttagtgttttcggaaaataaaat 11647685  T
Q  372 t 372  Q
    |    
T  11647686 t 11647686  T

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Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 272 - 423
Target Start/End: Original strand, 35158433 - 35158587
Alignment:
Q  272 ccctgctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttag-tgtttcctgaaa-ataaa 369  Q
    ||||||||||| ||| |||||| ||||||| || | ||||||||  ||||| ||||||| |  |||| ||||||||||||| | ||||| |||| | |||    
T  35158433 ccctgctgcctcctcgcgcgccctgcaaaatttactaaaatacccctggtccggattacataatccggaccagattgttagttatttccggaaacagaaa 35158532  T
Q  370 attcggacgcatacaatatgaaatat--tgtgtctttctttgatgtcaagggtctc 423  Q
    |||||||| || |   |||| ||| |  ||||||||||||||||||||||||||||    
T  35158533 attcggac-cagatgttatgtaattttctgtgtctttctttgatgtcaagggtctc 35158587  T

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Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 395 - 425
Target Start/End: Original strand, 4047978 - 4048008
Alignment:
Q  395 ttgtgtctttctttgatgtcaagggtctctg 425  Q
    |||||||||||||||||||||||||||||||    
T  4047978 ttgtgtctttctttgatgtcaagggtctctg 4048008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 395 - 425
Target Start/End: Original strand, 16451776 - 16451806
Alignment:
Q  395 ttgtgtctttctttgatgtcaagggtctctg 425  Q
    |||||||||||||||||||||||||||||||    
T  16451776 ttgtgtctttctttgatgtcaagggtctctg 16451806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 395 - 425
Target Start/End: Complemental strand, 38218565 - 38218535
Alignment:
Q  395 ttgtgtctttctttgatgtcaagggtctctg 425  Q
    |||||||||||||||||||||||||||||||    
T  38218565 ttgtgtctttctttgatgtcaagggtctctg 38218535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 377
Target Start/End: Original strand, 45924321 - 45924426
Alignment:
Q  274 ctgctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtg--tttcctgaaaataaaat 371  Q
    ||||||||||||| |||||||||||||| ||  |||||||||  ||||| ||||||  |  |||| |||| ||||||||||  ||||| ||| || ||||    
T  45924321 ctgctgccttctcgcgcgccatgcaaaatttttaaaaatacccctggtccggattatataatccggaccaaattgttagtgattttccggaacattaaat 45924420  T
Q  372 tcggac 377  Q
    ||||||    
T  45924421 tcggac 45924426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 261 - 418
Target Start/End: Complemental strand, 55614275 - 55614117
Alignment:
Q  261 ttacttttaccccctgctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcct 360  Q
    |||||||| | ||||| || |||||| |||||| || |||| ||||| |||||||  |||||  ||||||||  || | ||||||||||||||||||       
T  55614275 ttacttttccaccctgttgtcttctcgcgcgccttgtaaaaattccataaatacccctggtccagattacgtaatctggaccagattgttagtgtttatg 55614176  T
Q  361 gaaaataaaattcggacgcatacaatatgaa-atattgtgtctttctttgatgtcaagg 418  Q
    ||| ||  ||| |||||   ||| |||| || || ||||||||||||||||||||||||    
T  55614175 gaatatgtaatccggacaactacgatataaatattttgtgtctttctttgatgtcaagg 55614117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 425
Target Start/End: Original strand, 16023714 - 16023743
Alignment:
Q  396 tgtgtctttctttgatgtcaagggtctctg 425  Q
    ||||||||||||||||||||||||||||||    
T  16023714 tgtgtctttctttgatgtcaagggtctctg 16023743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 425
Target Start/End: Complemental strand, 28781067 - 28781038
Alignment:
Q  396 tgtgtctttctttgatgtcaagggtctctg 425  Q
    ||||||||||||||||||||||||||||||    
T  28781067 tgtgtctttctttgatgtcaagggtctctg 28781038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 425
Target Start/End: Original strand, 30003452 - 30003481
Alignment:
Q  396 tgtgtctttctttgatgtcaagggtctctg 425  Q
    ||||||||||||||||||||||||||||||    
T  30003452 tgtgtctttctttgatgtcaagggtctctg 30003481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 425
Target Start/End: Complemental strand, 43842174 - 43842145
Alignment:
Q  396 tgtgtctttctttgatgtcaagggtctctg 425  Q
    ||||||||||||||||||||||||||||||    
T  43842174 tgtgtctttctttgatgtcaagggtctctg 43842145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 425
Target Start/End: Complemental strand, 45029317 - 45029288
Alignment:
Q  396 tgtgtctttctttgatgtcaagggtctctg 425  Q
    ||||||||||||||||||||||||||||||    
T  45029317 tgtgtctttctttgatgtcaagggtctctg 45029288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 353
Target Start/End: Original strand, 45458056 - 45458137
Alignment:
Q  272 ccctgctgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagt 353  Q
    ||||||||||| ||| || ||| ||||||| || | |||||||| |||||| ||||||| |  ||||||||||||| |||||    
T  45458056 ccctgctgcctcctcgcgtgccttgcaaaatttactaaaatacccttggtccggattacataatccgaaccagattattagt 45458137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 425
Target Start/End: Original strand, 51538486 - 51538515
Alignment:
Q  396 tgtgtctttctttgatgtcaagggtctctg 425  Q
    ||||||||||||||||||||||||||||||    
T  51538486 tgtgtctttctttgatgtcaagggtctctg 51538515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 425
Target Start/End: Complemental strand, 56463938 - 56463909
Alignment:
Q  396 tgtgtctttctttgatgtcaagggtctctg 425  Q
    ||||||||||||||||||||||||||||||    
T  56463938 tgtgtctttctttgatgtcaagggtctctg 56463909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 278 - 425
Target Start/End: Original strand, 11924 - 12072
Alignment:
Q  278 tgccttctcacgcgccatgcaaaagttccaaaaataccattggtctggattacgttttccgaaccagattgttagtgtttcctgaaaataaaattcggac 377  Q
    ||||||||| |||||| ||||||| |||||||| ||||  ||||| ||||| ||| |||   || ||||||||||||||||| |||   | ||| |||||    
T  11924 tgccttctcgcgcgccctgcaaaaattccaaaattacccctggtccggatttcgtattcaagactagattgttagtgtttccggaaccgataatccggac 12023  T
Q  378 gcatacaatatgaa-atattgtgtctttctttgatgtcaagggtctctg 425  Q
      |||| ||||||| || |||||||||| ||||||||||| ||||||||    
T  12024 aaatacgatatgaatattttgtgtctttatttgatgtcaacggtctctg 12072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1301 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1301
Description:

Target: scaffold1301; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 425
Target Start/End: Original strand, 1502 - 1531
Alignment:
Q  396 tgtgtctttctttgatgtcaagggtctctg 425  Q
    ||||||||||||||||||||||||||||||    
T  1502 tgtgtctttctttgatgtcaagggtctctg 1531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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