View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8341_low_5 (Length: 454)
Name: NF8341_low_5
Description: NF8341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8341_low_5 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 416; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 1 - 436
Target Start/End: Original strand, 39856117 - 39856552
Alignment:
| Q |
1 |
cacgcctttgagatcaaaattttttgtcttgcctccttcaatgcttcattattttggtcagtgctgttcttagtcaaatcttgcaattttttcaaatttt |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
39856117 |
cacgcctttgagatcaaaaaattttgtcttgcctccttcaatgcttcattattttggtcagtgctgttcttagtcaagtcttgcaattttttcaaatttt |
39856216 |
T |
|
| Q |
101 |
taagttgctcaaacatcctcgcaatgttcttgacaaggttaacaacaacaccgacttgttctagttggtgagaagagaacatgtcaacattagcttcaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39856217 |
taagttgctcaaacatcctcgcaatgttcttgacaaggttaacaacaacaccgacttgttctagttggtgagaagagaacatgtcaacattagcttcaat |
39856316 |
T |
|
| Q |
201 |
tttttccatgactgtgttgaaactaactttaggagtgagaccttgtttaaatttttcaaccaagtcttctttaaaagcgatatccctcaattccataaga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39856317 |
tttttccatgactgtgttgaaactaactttaggagtgagaccttgtttaaatttttcaaccaagtcttctttaaaagcgatatccctcaattccataaga |
39856416 |
T |
|
| Q |
301 |
agttgctcttggaagttgggatccagcttcgagacttcttgtttttgaacagaattgtgagattttgaggaaagagtaatcccttctgataacactctgt |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
39856417 |
agttgctcttggaagttgggatccagcttcgagacttcttgtttttgaacagaatggtgagattttaaggaaagagtaatcccttctgataacactctgt |
39856516 |
T |
|
| Q |
401 |
cgatcgcaccaatgacatcctcatctatcatagcat |
436 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
39856517 |
cgatcgcaccaatgacatcctcatctatcatagcat |
39856552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 8 - 436
Target Start/End: Complemental strand, 39737972 - 39737544
Alignment:
| Q |
8 |
ttgagatcaaaattttttgtcttgcctccttcaatgcttcattattttggtcagtgctgttcttagtcaaatcttgcaattttttcaaatttttaagttg |
107 |
Q |
| |
|
||||| |||| ||||| ||||| | ||||||||||||||| ||| |||||||||||| ||||| | | | | || |||||||||||||| || || |
|
|
| T |
39737972 |
ttgagttcaatattttctgtctggtttccttcaatgcttcactatcttggtcagtgctcttcttggctatgtttcgctcttttttcaaattttcaatttt |
39737873 |
T |
|
| Q |
108 |
ctcaaacatcctcgcaatgttcttgacaaggttaacaacaacaccgacttgttctagttggtgagaagagaacatgtcaacattagcttcaattttttcc |
207 |
Q |
| |
|
|||| ||||||| ||||||| |||| ||||||||||||| ||||||||||||||| |||| |||| || || ||| ||||||| |||||||||||| |
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|
| T |
39737872 |
ttcaagcatcctcacaatgttgttgagaaggttaacaacagcaccgacttgttctaattggagagaggaaaatgcatcagcattagcgtcaattttttcc |
39737773 |
T |
|
| Q |
208 |
atgactgtgttgaaactaactttaggagtgagaccttgtttaaatttttcaaccaagtcttctttaaaagcgatatccctcaattccataagaagttgct |
307 |
Q |
| |
|
|||||| ||||||| ||||||||| ||||||||||| ||||| |||||||||||||||| |||||||||| |||||||| |||||| ||||||||||| |
|
|
| T |
39737772 |
ttgactgcgttgaaattaactttagaagtgagaccttctttaagtttttcaaccaagtctcctttaaaagcaatatcccttaattcctgaagaagttgct |
39737673 |
T |
|
| Q |
308 |
cttggaagttgggatccagcttcgagacttcttgtttttgaacagaattgtgagattttgaggaaagagtaatcccttctgataacactctgtcgatcgc |
407 |
Q |
| |
|
| ||| ||||||||| | || ||| |||| || ||| ||||||| || |||||| ||||||||||||||||||| ||||| |||||||| || || |
|
|
| T |
39737672 |
cagggagattgggatcccgttttgagtattctcgtccttggacagaatgctgggattttaaggaaagagtaatcccttccgataaaactctgtcaattgc |
39737573 |
T |
|
| Q |
408 |
accaatgacatcctcatctatcatagcat |
436 |
Q |
| |
|
|||||||||||||||||| |||||||| |
|
|
| T |
39737572 |
cgcaatgacatcctcatctaccatagcat |
39737544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 14 - 436
Target Start/End: Original strand, 39863329 - 39863754
Alignment:
| Q |
14 |
tcaaaattttttgtcttgcctccttcaatgcttcattattttggtcagtgctgttcttagtcaaatcttgcaattttttcaaatttttaagttgctcaaa |
113 |
Q |
| |
|
|||| ||||||||||||| |||||||||||||||||||| |||||||||||| | ||| || || || || |||||||||||||| |||| |||||| |
|
|
| T |
39863329 |
tcaatattttttgtcttgtctccttcaatgcttcattatcttggtcagtgctttccttggttaaggctcgctcttttttcaaattttcgagtttctcaaa |
39863428 |
T |
|
| Q |
114 |
catcctcgcaatgttcttgacaaggttaacaacaacaccgacttgttctagttggtgagaagagaacatgtcaacattagcttcaattttttccatgact |
213 |
Q |
| |
|
|| | || ||||| | |||| |||||||||||||||||| |||||||||| ||| |||| | ||| |||| ||||||| |||||||||||| ||||| |
|
|
| T |
39863429 |
caccttcacaatggtgttgagaaggttaacaacaacaccaacttgttctaattgacgagacgtgaaagcgtcagcattagcatcaattttttccttgact |
39863528 |
T |
|
| Q |
214 |
gtgttgaaactaactttaggagtgagaccttgtttaaatttttcaaccaagtcttctttaaaagcgatatccctcaattccataagaagttgctcttgga |
313 |
Q |
| |
|
|| ||||| |||||||||||| || ||||| ||| |||||||||||||||||||||||||| || ||||||||||||||| ||||||||||| ||| |
|
|
| T |
39863529 |
gtattgaagttaactttaggagagataccttcttttaatttttcaaccaagtcttctttaaaggcaatatccctcaattcctgaagaagttgcttaggga |
39863628 |
T |
|
| Q |
314 |
agttgggatccagcttcgaga---cttcttgtttttgaacagaattgtgagattttgaggaaagagtaatcccttctgataacactctgtcgatcgcacc |
410 |
Q |
| |
|
| |||||||||| || | || |||||||| ||||||||||| ||| ||| | | |||| ||| ||||||| ||||| ||| ||||||| ||| | |
|
|
| T |
39863629 |
ggctgggatccagttttgcgacctcttcttgtccttgaacagaatgctgaaattgtaatgaaatggtattcccttcggataaaactttgtcgattgcagc |
39863728 |
T |
|
| Q |
411 |
aatgacatcctcatctatcatagcat |
436 |
Q |
| |
|
||| ||||||||| |||||||||||| |
|
|
| T |
39863729 |
aataacatcctcacctatcatagcat |
39863754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 113 - 436
Target Start/End: Complemental strand, 38980713 - 38980390
Alignment:
| Q |
113 |
acatcctcgcaatgttcttgacaaggttaacaacaacaccgacttgttctagttggtgagaagagaacatgtcaacattagcttcaattttttccatgac |
212 |
Q |
| |
|
|||| ||| ||||||| |||||||||| ||||| |||| ||||||||||||||||| ||| || |||| |||| ||||||| |||| ||||||| |||| |
|
|
| T |
38980713 |
acattctcacaatgttgttgacaaggtcaacaaagacactgacttgttctagttggttagaggaaaacaagtcagcattagcgtcaaatttttccttgac |
38980614 |
T |
|
| Q |
213 |
tgtgttgaaactaactttaggagtgagaccttgtttaaatttttcaaccaagtcttctttaaaagcgatatccctcaattccataagaagttgctcttgg |
312 |
Q |
| |
|
|| ||||| | |||||| | |||||||| |||||||||||||||||| || ||| | ||||||| ||||||| |||||||| ||| || |
|
|
| T |
38980613 |
tgcattgaagttgtctttagtaaagagaccttcaaataatttttcaaccaagtctcattcaaagacaatatcccacaattcctgaagaagtttctcaggg |
38980514 |
T |
|
| Q |
313 |
aagttgggatccagcttcgagacttcttgtttttgaacagaattgtgagattttgaggaaagagtaatcccttctgataacactctgtcgatcgcaccaa |
412 |
Q |
| |
|
| |||||||| ||| || ||||||||||||| ||| ||||||| ||||||||| ||||| ||||||||||||||||| ||||||| ||| | | ||| |
|
|
| T |
38980513 |
aggttgggatacagttttgagacttcttgttcttggacagaatgctgagattttacggaaatggtaatcccttctgataaaactctgttgatagaagcaa |
38980414 |
T |
|
| Q |
413 |
tgacatcctcatctatcatagcat |
436 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
38980413 |
tgacatcctcatctatcatagcat |
38980390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 6 - 305
Target Start/End: Original strand, 39846404 - 39846703
Alignment:
| Q |
6 |
ctttgagatcaaaattttttgtcttgcctccttcaatgcttcattattttggtcagtgctgttcttagtcaaatcttgcaattttttcaaatttttaagt |
105 |
Q |
| |
|
|||||| | ||| ||||||||||||| | |||||||| | ||||||| ||||| ||||| |||||| | | | || ||||| ||| |||| ||| |
|
|
| T |
39846404 |
ctttgacaacaatattttttgtcttgtcgccttcaattcctcattatcctggtcggtgctcttcttaattgcgtatcgctctttttccaatttttcgagt |
39846503 |
T |
|
| Q |
106 |
tgctcaaacatcctcgcaatgttcttgacaaggttaacaacaacaccgacttgttctagttggtgagaagagaacatgtcaacattagcttcaatttttt |
205 |
Q |
| |
|
| ||||||||||| | |||| || |||| || ||||||||||||| ||||||| || || | ||||| | ||||||||| |||||||||| ||||| | |
|
|
| T |
39846504 |
ttctcaaacatccactcaattttgttgagaaagttaacaacaacatgaacttgttttaattcgcgagaatataacatgtcagcattagcttcgattttat |
39846603 |
T |
|
| Q |
206 |
ccatgactgtgttgaaactaactttaggagtgagaccttgtttaaatttttcaaccaagtcttctttaaaagcgatatccctcaattccataagaagttg |
305 |
Q |
| |
|
|| ||||| ||||| | |||| | ||| |||||| ||||||||||| |||||||||||| |||||| |||||||||||||||||| ||||||||| |
|
|
| T |
39846604 |
ccttgactacattgaagtttacttcacgagcaagacctagtttaaattttacaaccaagtcttttttaaaggcgatatccctcaattcctgaagaagttg |
39846703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 368 - 436
Target Start/End: Original strand, 39897058 - 39897126
Alignment:
| Q |
368 |
aggaaagagtaatcccttctgataacactctgtcgatcgcaccaatgacatcctcatctatcatagcat |
436 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
39897058 |
aggaaagagtaatcccttctgataaaactctgtcgattgcagcaatgacatcctcatctatcatagcat |
39897126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 81; Significance: 6e-38; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 14 - 340
Target Start/End: Complemental strand, 53495600 - 53495268
Alignment:
| Q |
14 |
tcaaaattttttgtcttgcctccttcaatgcttcattattttggtcagtgctgttcttagtcaaatcttgca--------attttttcaaatttttaagt |
105 |
Q |
| |
|
|||| ||||||||||||| | ||| |||||||||||||| |||| ||||| || ||||||| | |||||| |||||||||||||| || | |
|
|
| T |
53495600 |
tcaatattttttgtcttgtcacctacaatgcttcattatcttggccagtgttgctcttagttgatacttgcagacttgctcttttttcaaattttaaatt |
53495501 |
T |
|
| Q |
106 |
tgctcaaacatcctcgcaatgttcttgacaaggttaacaacaacaccgacttgttctagttggtgagaagagaacatgtcaacattagcttcaatttttt |
205 |
Q |
| |
|
| |||||||||||| ||||||| |||| |||||||||||||||||| | |||||||| ||| ||||| |||||| ||| ||||||| ||||||||| |
|
|
| T |
53495500 |
ttttcaaacatcctcacaatgttgttgagaaggttaacaacaacaccaatttgttctaattgctgagaggagaacgcatcagcattagcgtcaattttta |
53495401 |
T |
|
| Q |
206 |
ccatgactgtgttgaaactaactttaggagtgagaccttgtttaa-atttttcaaccaagtcttctttaaaagcgatatccctcaattccataagaagtt |
304 |
Q |
| |
|
|| ||| || ||||| ||||||| ||||||||||||| ||||| ||||||||||||| |||||||| | |||||||||||||||| |||||||| |
|
|
| T |
53495400 |
ccttgattgcattgaagttaacttttggagtgagaccttctttaatttttttcaaccaag---tctttaaaggtgatatccctcaattcctgaagaagtt |
53495304 |
T |
|
| Q |
305 |
gctcttggaagttgggatccagcttcgagacttctt |
340 |
Q |
| |
|
||| ||| |||||||||||| || | |||||||| |
|
|
| T |
53495303 |
gcttagggaggttgggatccagttttgtgacttctt |
53495268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 246 - 436
Target Start/End: Original strand, 32826844 - 32827034
Alignment:
| Q |
246 |
tttaaatttttcaaccaagtcttctttaaaagcgatatccctcaattccataagaagttgctcttggaagttgggatccagcttcgagacttcttgtttt |
345 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||||||||||||||||| || ||||||||| || ||||||||| || |||||| ||| |||| | |
|
|
| T |
32826844 |
tttaaatttttcaaccaagtcctctttaaaggcgatatccctcaattcctgaaaaagttgctcaaagaggttgggatctagtttcgaggcttgttgtcct |
32826943 |
T |
|
| Q |
346 |
tgaacagaattgtgagattttgaggaaagagtaatcccttctgataacactctgtcgatcgcaccaatgacatcctcatctatcatagcat |
436 |
Q |
| |
|
|| ||||||| |||||||| ||| || ||||||||||||| |||| |||||||| || ||| ||| || ||||||||||||||||||| |
|
|
| T |
32826944 |
tgtacagaatgccgagattttaagggaaaagtaatcccttctaataaaactctgtcaattgcagcaacaacgtcctcatctatcatagcat |
32827034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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