View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8341_low_8 (Length: 428)
Name: NF8341_low_8
Description: NF8341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8341_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 422
Target Start/End: Complemental strand, 43592055 - 43591634
Alignment:
| Q |
1 |
tccaaataaaataaaataaatcataaattagattaactaagcctcaaaagaaagtaatcaaaccagtatatttaccttgtgtttgtcaaagtaaatacat |
100 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||| ||||| |||| |||| |
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| T |
43592055 |
tccaaataaaataaaataaatcctaaattagattaactaagcgtcgaaagaaagtaatcaaaccatgatatttaccttgtgtttatcaaaataaagacat |
43591956 |
T |
|
| Q |
101 |
agtcttgagtcatcatcccctaccatttttgcatgcatgcaatgtgaaaataataaaattaatggttataatcatttttgtgactaaattttctatgcca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||| | |||||||| ||||||||||| |
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| T |
43591955 |
agtcttgagtcatcatcccctaccatttttgcatgcatgcaatgtggaaataataaatttagtggttataatcatttctatgactaaaatttctatgcca |
43591856 |
T |
|
| Q |
201 |
gcaaatgatcctatccttcaccattgctaggagaaagttaaaaattccaactccaagtgatacaaaagtgaaagaaggatatacatttacaacattgtaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
43591855 |
gcaaatgatcctatccttcaccattgctaggagaaagttaaaaattccaactccaagtgatacaaaagtgaaaaaaggatatacatttacaacattgtaa |
43591756 |
T |
|
| Q |
301 |
accaacaatatactgcaattccgtgaaggttaaaaaaccaatttttgtaaccattattagcggttgattataatatgaaatctaagaaatacaattgact |
400 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
43591755 |
accgacaatatactgcaattccgtgaaggttaaaaaaccaatttttgtaaccattattagcggttgattataatatgaaatctaagaaatacagttgact |
43591656 |
T |
|
| Q |
401 |
aattttttccttgatgtccatc |
422 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
43591655 |
aattttttccttgatgtccatc |
43591634 |
T |
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Target: chr5 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 24 - 179
Target Start/End: Complemental strand, 40798668 - 40798513
Alignment:
| Q |
24 |
taaattagattaactaagcctcaaaagaaagtaatcaaaccagtatatttaccttgtgtttgtcaaagtaaatacatagtcttgagtcatcatcccctac |
123 |
Q |
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|||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||||| |
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| T |
40798668 |
taaattagattaaccaagccttgaaagaaagtaatcaaaccagtatatttaccttgtgtttatcaaagtaaagacatagtcttgagtcatcatcgcctac |
40798569 |
T |
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| Q |
124 |
catttttgcatgcatgcaatgtgaaaataataaaattaatggttataatcattttt |
179 |
Q |
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|| ||||| ||| ||||||| ||||||| |||||| ||||| ||||||||||| |
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| T |
40798568 |
cacttttgtgtgcctgcaatgctgaaataatgaaattagtggttctaatcattttt |
40798513 |
T |
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