View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8341_low_9 (Length: 418)

Name: NF8341_low_9
Description: NF8341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8341_low_9
NF8341_low_9
[»] chr1 (12 HSPs)
chr1 (232-418)||(13930435-13930621)
chr1 (232-418)||(14070964-14071150)
chr1 (18-175)||(13930223-13930380)
chr1 (232-365)||(21277271-21277403)
chr1 (271-397)||(38281023-38281150)
chr1 (286-418)||(40811422-40811552)
chr1 (290-418)||(22167943-22168071)
chr1 (269-418)||(51726640-51726790)
chr1 (134-175)||(14070868-14070909)
chr1 (260-310)||(48571920-48571970)
chr1 (272-396)||(13642361-13642482)
chr1 (253-281)||(22168064-22168092)
[»] chr5 (9 HSPs)
chr5 (233-418)||(19525050-19525234)
chr5 (238-418)||(40058188-40058367)
chr5 (18-175)||(19524825-19524997)
chr5 (304-418)||(32734301-32734415)
chr5 (289-416)||(12933923-12934049)
chr5 (289-416)||(12948084-12948210)
chr5 (305-397)||(38471481-38471573)
chr5 (260-358)||(5383171-5383267)
chr5 (290-418)||(2167333-2167461)
[»] chr8 (15 HSPs)
chr8 (18-175)||(37472780-37472950)
chr8 (232-354)||(36070416-36070537)
chr8 (232-319)||(37472645-37472732)
chr8 (267-418)||(19913662-19913810)
chr8 (252-414)||(37324471-37324630)
chr8 (290-418)||(2421111-2421239)
chr8 (253-418)||(44606309-44606472)
chr8 (290-414)||(35944082-35944207)
chr8 (286-418)||(13366866-13366996)
chr8 (304-397)||(8395186-8395279)
chr8 (288-416)||(8095518-8095647)
chr8 (285-341)||(29738518-29738573)
chr8 (346-418)||(37472572-37472644)
chr8 (353-418)||(20308775-20308840)
chr8 (353-418)||(21095408-21095473)
[»] chr3 (7 HSPs)
chr3 (232-418)||(49333153-49333336)
chr3 (257-414)||(51400389-51400545)
chr3 (288-416)||(12062198-12062328)
chr3 (288-414)||(23559993-23560120)
chr3 (304-418)||(35174215-35174328)
chr3 (288-362)||(48867250-48867324)
chr3 (304-397)||(26798737-26798831)
[»] chr7 (5 HSPs)
chr7 (238-414)||(25154700-25154878)
chr7 (285-418)||(46458525-46458659)
chr7 (271-397)||(131798-131924)
chr7 (304-418)||(10256293-10256407)
chr7 (285-399)||(24872179-24872292)
[»] chr6 (8 HSPs)
chr6 (268-413)||(31738538-31738682)
chr6 (254-418)||(293423-293586)
chr6 (288-410)||(14327241-14327368)
chr6 (288-410)||(14420251-14420378)
chr6 (272-418)||(16268711-16268857)
chr6 (291-397)||(27439992-27440100)
chr6 (271-362)||(9927832-9927923)
chr6 (272-396)||(22298795-22298916)
[»] chr4 (7 HSPs)
chr4 (305-418)||(6140193-6140306)
chr4 (257-413)||(52660001-52660155)
chr4 (257-365)||(28102291-28102397)
chr4 (304-418)||(50530673-50530787)
chr4 (257-416)||(31712291-31712450)
chr4 (288-397)||(48207536-48207644)
chr4 (305-376)||(17319256-17319327)
[»] chr2 (10 HSPs)
chr2 (285-418)||(10367409-10367542)
chr2 (285-418)||(37868852-37868986)
chr2 (257-416)||(7037138-7037296)
chr2 (285-418)||(12959518-12959651)
chr2 (286-418)||(14509379-14509510)
chr2 (248-310)||(29076940-29077002)
chr2 (273-397)||(42249585-42249709)
chr2 (311-416)||(11575326-11575430)
chr2 (305-418)||(35799682-35799795)
chr2 (285-418)||(25570689-25570816)
[»] scaffold0122 (1 HSPs)
scaffold0122 (286-418)||(16115-16247)
[»] scaffold0178 (1 HSPs)
scaffold0178 (288-397)||(1400-1508)
[»] scaffold0003 (1 HSPs)
scaffold0003 (291-397)||(47261-47369)


Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 232 - 418
Target Start/End: Original strand, 13930435 - 13930621
Alignment:
Q  232 caagatgatgaatatagatgaatgagagttttatttggggatgaagaagaatgatagggaagaagatggagggaaaaaattaggtgtttgtggttcaata 331  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13930435 caagatgatgaatatagatgaatgagagttttatttggggatgaagaagaatgatagggaagaagatggagggaaaaaattaggtgtttgtggttcaata 13930534  T
Q  332 taagctacaatagacccctccatgatccaacggttttcattttaagaaatgatcaaacggttaaaaatatatgatttaataaggtct 418  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13930535 taagctacaatagacccctccatgatccaacggttttcattttaagaaatgatcaaacggttaaaaatatatgatttaataaggtct 13930621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 232 - 418
Target Start/End: Original strand, 14070964 - 14071150
Alignment:
Q  232 caagatgatgaatatagatgaatgagagttttatttggggatgaagaagaatgatagggaagaagatggagggaaaaaattaggtgtttgtggttcaata 331  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14070964 caagatgatgaatatagatgaatgagagttttatttggggatgaagaagaatgatagggaagaagatggagggaaaaaattaggtgtttgtggttcaata 14071063  T
Q  332 taagctacaatagacccctccatgatccaacggttttcattttaagaaatgatcaaacggttaaaaatatatgatttaataaggtct 418  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14071064 taagctacaatagacccctccatgatccaacggttttcattttaagaaatgatcaaacggttaaaaatatatgatttaataaggtct 14071150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 18 - 175
Target Start/End: Original strand, 13930223 - 13930380
Alignment:
Q  18 gtagttatgagatggtgaaaaatctataaactttttgtgattaaaataggagttgttgatggtgaaaaatctataaacctgaaaattagatctgaaaaaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13930223 gtagttatgagatggtgaaaaatctataaactttttgtgattaaaataggagttgttgatggtgaaaaatctataaacctgaaaattagatctgaaaaaa 13930322  T
Q  118 tgagtttgtgtcatgggaagataatgaaggttaaatgaagaagatgaagattgataag 175  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13930323 tgagtttgtgtcatgggaagataatgaaggttaaatgaagaagatgaagattgataag 13930380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 232 - 365
Target Start/End: Complemental strand, 21277403 - 21277271
Alignment:
Q  232 caagatgatgaatatagatgaatgagagttttatttggggatgaagaagaatgatagggaagaagatggagggaaaaaattaggtgtttgtggttcaata 331  Q
    |||||||||||||| || || ||||||| ||||||||||||||||||||||  ||||||||||||||||| |||||||||||||||||||||||||| ||    
T  21277403 caagatgatgaataaagttgtatgagagatttatttggggatgaagaagaacaatagggaagaagatgga-ggaaaaaattaggtgtttgtggttcatta 21277305  T
Q  332 taagctacaatagacccctccatgatccaacggt 365  Q
    |||| |||||||||  ||||||| || |||||||    
T  21277304 taagttacaatagattcctccataattcaacggt 21277271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 271 - 397
Target Start/End: Complemental strand, 38281150 - 38281023
Alignment:
Q  271 gatgaagaagaatgataggg-aagaagatggagggaaaaaattaggtgtttgtggttcaatataagctacaatagacccctccatgatccaacggttttc 369  Q
    ||||||||||| || ||||| ||||||||| ||  ||||||||||||| |||||||||| ||||| |||||||||| ||||||||||||||||  | |||    
T  38281150 gatgaagaagattggtaggggaagaagatgaagacaaaaaattaggtggttgtggttcattataatctacaatagatccctccatgatccaacaatcttc 38281051  T
Q  370 attttaagaaatgatcaaacggttaaaa 397  Q
    |||| || ||| ||||||||||||||||    
T  38281050 atttaaataaaagatcaaacggttaaaa 38281023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 286 - 418
Target Start/End: Complemental strand, 40811552 - 40811422
Alignment:
Q  286 tagggaagaagatggagggaaaaaattaggtgtttgtggttcaatataagctacaatagacccctccatgatccaacggttttcattttaagaaatgatc 385  Q
    ||||||||| |||||||| ||||||||||| ||| ||  |||| |||||| ||||||||| | |||| |||||||||||| ||||||| || |||  |||    
T  40811552 tagggaagatgatggagg-aaaaaattaggggtt-gttattcattataagttacaatagatctctccttgatccaacggtcttcatttaaaaaaaatatc 40811455  T
Q  386 aaacggttaaaaatatatgatttaataaggtct 418  Q
    ||||||||||||||| | |||||||||||||||    
T  40811454 aaacggttaaaaataaaagatttaataaggtct 40811422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 290 - 418
Target Start/End: Complemental strand, 22168071 - 22167943
Alignment:
Q  290 gaagaagatggagggaaaaaattaggtgtttgtggttcaatataagctacaatagacccctccatgatccaacggttttcattt-taagaaatgatcaaa 388  Q
    |||||||||||||| |||| ||||||||||||||||||| ||||| |||||||||| | |||  |||||||| ||| | |||||  || ||| |||||||    
T  22168071 gaagaagatggagg-aaaatattaggtgtttgtggttcattataaactacaatagatctctcattgatccaatggtctccatttaaaaaaaaagatcaaa 22167973  T
Q  389 cggttaaaaatatatgatttaataaggtct 418  Q
    | |||||||||| | |||||||||||||||    
T  22167972 ccgttaaaaataaaagatttaataaggtct 22167943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 269 - 418
Target Start/End: Original strand, 51726640 - 51726790
Alignment:
Q  269 gggatgaagaagaatgatagggaagaagatggagggaaaa-aattaggtgtttgtggttcaatataagctacaatagacccctccatgatccaacggttt 367  Q
    ||||||||||||||  ||||||||||||||||||  |||| ||||||||||| |||||||  ||||||||| |||||| | |||| |||||||||||| |    
T  51726640 gggatgaagaagaac-atagggaagaagatggagaaaaaaaaattaggtgttcgtggttctttataagctataatagatctctccttgatccaacggtct 51726738  T
Q  368 tcattttaagaaatgatcaaacggtt-aaaaatatatgatttaataaggtct 418  Q
      |||| || | |  ||||||||||| ||||||| | |||||||||||||||    
T  51726739 ctatttaaaaagagtatcaaacggttaaaaaataaaagatttaataaggtct 51726790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 134 - 175
Target Start/End: Original strand, 14070868 - 14070909
Alignment:
Q  134 gaagataatgaaggttaaatgaagaagatgaagattgataag 175  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  14070868 gaagataatgaaggttaaatgaagaagatgaagattgataag 14070909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 260 - 310
Target Start/End: Complemental strand, 48571970 - 48571920
Alignment:
Q  260 ttttatttggggatgaagaagaatgatagggaagaagatggagggaaaaaa 310  Q
    |||||||||||||||||||||||  ||| ||||||||||||||||||||||    
T  48571970 ttttatttggggatgaagaagaactataaggaagaagatggagggaaaaaa 48571920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 272 - 396
Target Start/End: Original strand, 13642361 - 13642482
Alignment:
Q  272 atgaagaagaatgata-gggaagaagatggagggaaaaaattaggtgtttgtggttcaatataagctacaatagacccctccatgatccaacggttttca 370  Q
    |||||||||| ||||| |||||||||||| ||  ||| | ||||||  |||||||||| |||||||||||||||| ||||  |||||||||   | || |    
T  13642361 atgaagaagattgataagggaagaagatgaaga-aaatacttaggttgttgtggttcattataagctacaatagatcccttaatgatccaa---tcttta 13642456  T
Q  371 ttttaagaaatgatcaaacggttaaa 396  Q
    ||| || ||| |||||||||||||||    
T  13642457 tttaaaaaaaagatcaaacggttaaa 13642482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 253 - 281
Target Start/End: Complemental strand, 22168092 - 22168064
Alignment:
Q  253 atgagagttttatttggggatgaagaaga 281  Q
    |||||||||||||||||||||||||||||    
T  22168092 atgagagttttatttggggatgaagaaga 22168064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 104; Significance: 1e-51; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 233 - 418
Target Start/End: Original strand, 19525050 - 19525234
Alignment:
Q  233 aagatgatgaatatagatgaatgagagttttatttggggatgaagaagaatgatagggaagaagatggagg-gaaaaaattaggtgtttgtggttcaata 331  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||  |||||||||  ||| | |||||||  |    
T  19525050 aagatgatgaataaagatgaatgagagttttatttggggatgaagaagaatgatggggaagaagatggaggaaaaaaaatta--tgtgtctggttcatca 19525147  T
Q  332 taagctacaatagacccctccatgatccaacggttttcattttaagaaatgatcaaacggttaaaaatatatgatttaataaggtct 418  Q
    ||||||||||| || ||||||||||||||||||| | ||||| || ||| |||||||| ||||||||||| ||||||||||||||||    
T  19525148 taagctacaattgatccctccatgatccaacggtctccatttaaaaaaaagatcaaacagttaaaaatatgtgatttaataaggtct 19525234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 238 - 418
Target Start/End: Complemental strand, 40058367 - 40058188
Alignment:
Q  238 gatgaatatagatgaatgagagttttatttggggatgaagaagaatgatagggaagaagatggagggaaaaaattaggtgtttgtggttcaatataagct 337  Q
    |||||||| |||||||||||||||||  |||||||||||||||||  ||||| ||||||||||| | |||||||||| ||||| ||||| | || |||||    
T  40058367 gatgaataaagatgaatgagagtttttattggggatgaagaagaa-cataggaaagaagatgga-gaaaaaaattagttgtttctggttaattacaagct 40058270  T
Q  338 acaatagacccctccatgatccaacggttttcatttt-aagaaatgatcaaacggttaaaaatatatgatttaataaggtct 418  Q
    ||||||||  |||| ||||||||||||| | |||||| || ||| |||||||| |||||||||| | |||||||||||||||    
T  40058269 acaatagattcctctatgatccaacggtctccattttaaaaaaaagatcaaacagttaaaaataaaagatttaataaggtct 40058188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 18 - 175
Target Start/End: Original strand, 19524825 - 19524997
Alignment:
Q  18 gtagttatgagatggtgaaaaa-tctataaactttttgtgattaaaataggagttg---ttgatggtgaaaaatctataaacctg-aaaattagatctga 112  Q
    ||||| |||||||||||||||| || |||||| ||||||||||| |||||||||||   ||||||||| |||||||||||||||| |||||||||||||     
T  19524825 gtagtgatgagatggtgaaaaaatcaataaaccttttgtgattagaataggagttgttgttgatggtggaaaatctataaacctgaaaaattagatctgg 19524924  T
Q  113 aaaaatgagttt----------gtgtcatgggaagataatgaaggttaaatgaagaagatgaagattgataag 175  Q
    ||||||| ||||          |||||||| |||||| |||||||||||||||||||||||||||||||||||    
T  19524925 aaaaatgggtttgttcatatgggtgtcatgcgaagatgatgaaggttaaatgaagaagatgaagattgataag 19524997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 304 - 418
Target Start/End: Complemental strand, 32734415 - 32734301
Alignment:
Q  304 gaaaaaattaggtgtttgtggttcaatataagctacaatagacccctccatgatccaacggttttcattttaagaaatgatcaaacggttaaaaatatat 403  Q
    ||||||||||||||||||||||| | |||||||||||||||| ||||||||||||||||||| | |||||||| |||  ||||||| |||||||||| |     
T  32734415 gaaaaaattaggtgtttgtggtttattataagctacaatagatccctccatgatccaacggtctccattttaaaaaaatatcaaactgttaaaaataaaa 32734316  T
Q  404 gatttaataaggtct 418  Q
    |||||||||||||||    
T  32734315 gatttaataaggtct 32734301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 289 - 416
Target Start/End: Complemental strand, 12934049 - 12933923
Alignment:
Q  289 ggaagaagatggagggaaaaaattaggtgtttgtggttcaatataagctacaatagacccctccatgatccaacggttttcattttaagaaatgatcaaa 388  Q
    |||||||||||| ||||||||||||||| ||||||||| | |||||| ||||||||| ||||||||||||||||||| |||||||  | ||| |||||||    
T  12934049 ggaagaagatgg-gggaaaaaattaggtctttgtggtttattataagttacaatagatccctccatgatccaacggtcttcatttataaaaaagatcaaa 12933951  T
Q  389 cggttaaaaatatatgatttaataaggt 416  Q
      |||||||||  | |||||||||||||    
T  12933950 acgttaaaaatgaaagatttaataaggt 12933923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 289 - 416
Target Start/End: Complemental strand, 12948210 - 12948084
Alignment:
Q  289 ggaagaagatggagggaaaaaattaggtgtttgtggttcaatataagctacaatagacccctccatgatccaacggttttcattttaagaaatgatcaaa 388  Q
    |||||||||||| ||||||||||||||| ||||||||| | |||||| ||||||||| ||||||||||||||||||| |||||||  | ||| |||||||    
T  12948210 ggaagaagatgg-gggaaaaaattaggtctttgtggtttattataagttacaatagatccctccatgatccaacggtcttcatttataaaaaagatcaaa 12948112  T
Q  389 cggttaaaaatatatgatttaataaggt 416  Q
      |||||||||  | |||||||||||||    
T  12948111 acgttaaaaatgaaagatttaataaggt 12948084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 305 - 397
Target Start/End: Complemental strand, 38471573 - 38471481
Alignment:
Q  305 aaaaaattaggtgtttgtggttcaatataagctacaatagacccctccatgatccaacggttttcattttaagaaatgatcaaacggttaaaa 397  Q
    ||||||||||||| |||||||||| |||||||||||||||| ||||| ||||||||||  | |||||||||| ||| ||||||||||||||||    
T  38471573 aaaaaattaggtggttgtggttcattataagctacaatagatccctctatgatccaacaatcttcattttaaaaaaagatcaaacggttaaaa 38471481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 260 - 358
Target Start/End: Complemental strand, 5383267 - 5383171
Alignment:
Q  260 ttttatttggggatgaagaagaatgatagggaagaagatggagggaaaaaattaggtgtttgtggttcaatataagctacaatagacccctccatgatc 358  Q
    ||||| ||||| |||||||| ||| ||||| ||||||||||||| |||||||| ||||||||||||||  |||||||||||||||| ||||||||||||    
T  5383267 ttttaattgggtatgaagaataat-ataggaaagaagatggagg-aaaaaatttggtgtttgtggttcgttataagctacaatagatccctccatgatc 5383171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 290 - 418
Target Start/End: Original strand, 2167333 - 2167461
Alignment:
Q  290 gaagaagatggagggaaaaaattaggtgtttgtggttcaatataagctacaatagacccctccatgatccaacggttttcattt-taagaaatgatcaaa 388  Q
    |||||||||||||| |||||||||||||||||||||||| ||||| |||||||||| | |||  |||||||| ||| | |||||  || |||  ||||||    
T  2167333 gaagaagatggagg-aaaaaattaggtgtttgtggttcattataaactacaatagatctctcattgatccaatggtctccatttaaaaaaaaaaatcaaa 2167431  T
Q  389 cggttaaaaatatatgatttaataaggtct 418  Q
    ||||||| |||| | |||||||||||||||    
T  2167432 cggttaataataaaagatttaataaggtct 2167461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 102; Significance: 2e-50; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 18 - 175
Target Start/End: Complemental strand, 37472950 - 37472780
Alignment:
Q  18 gtagttatgagatggtgaaaaatctataaactttttgtgattaaaatagga---gttgttgatggtgaaaaatctataaacctgaaaattagatctgaaa 114  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||| ||||||| ||||||||||||||||| ||    
T  37472950 gtagtgatgagatggtgaaaaatctataaactttttgtgattaaaataggaattgttgttgatggtgaaaagtctataaccctgaaaattagatctggaa 37472851  T
Q  115 aaatgagttt----------gtgtcatgggaagataatgaaggttaaatgaagaagatgaagattgataag 175  Q
    ||||||||||          ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  37472850 aaatgagtttgtttatatgggtgtcatgggaagatgatgaaggttaaatgaagaagatgaagattgataag 37472780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 232 - 354
Target Start/End: Complemental strand, 36070537 - 36070416
Alignment:
Q  232 caagatgatgaatatagatgaatgagagttttatttggggatgaagaagaatgatagggaagaagatggagggaaaaaattaggtgtttgtggttcaata 331  Q
    |||||||||||||| || || ||||||| ||||||||||||||||||||||  ||||||||||||||||| |||||||||||||||||||||||||| ||    
T  36070537 caagatgatgaataaagttggatgagagatttatttggggatgaagaagaacaatagggaagaagatgga-ggaaaaaattaggtgtttgtggttcatta 36070439  T
Q  332 taagctacaatagacccctccat 354  Q
    ||||||||||||||  |||||||    
T  36070438 taagctacaatagattcctccat 36070416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 232 - 319
Target Start/End: Complemental strand, 37472732 - 37472645
Alignment:
Q  232 caagatgatgaatatagatgaatgagagttttatttggggatgaagaagaatgatagggaagaagatggagggaaaaaattaggtgtt 319  Q
    |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  37472732 caagatgatgaataaagatgaaagagagttttatttggggatgaagaagaatgatagggaagaagatggagagaaaaaactaggtgtt 37472645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 267 - 418
Target Start/End: Complemental strand, 19913810 - 19913662
Alignment:
Q  267 tggggatgaagaagaatgatagggaagaagatggagggaaaaaattaggtgtttgtggttcaatataagctacaatagacccctccatgatccaacggtt 366  Q
    ||||||||||||||||  ||| ||||||||||||||| |||||||| ||||||||||||||| |||||||||| ||||| |||||| ||||||||||||     
T  19913810 tggggatgaagaagaac-ataaggaagaagatggagg-aaaaaatttggtgtttgtggttcattataagctacgatagatccctccttgatccaacggtc 19913713  T
Q  367 ttcattttaagaaatgatcaaacggttaaaaatatatgatttaataaggtct 418  Q
    | ||||| || |||| |||||| ||||||||| || ||||||||||| ||||    
T  19913712 tccatttaaaaaaat-atcaaatggttaaaaacatgtgatttaataaagtct 19913662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 252 - 414
Target Start/End: Original strand, 37324471 - 37324630
Alignment:
Q  252 aatgagagttttatttggggatgaagaagaatgatagggaagaagatggagggaaaaaattaggtgtttgtggttcaatataagctacaatagacccctc 351  Q
    ||||| ||||||| |||||||||||||||||  ||||||||||||||||||| |||||||| ||||||||||||||  |||||||||||||||| |||||    
T  37324471 aatgaaagttttaattggggatgaagaagaac-atagggaagaagatggagg-aaaaaattcggtgtttgtggttcgttataagctacaatagatccctc 37324568  T
Q  352 catgatccaacggttttcattttaagaaatgatcaaacggttaaaaatatatgatttaataag 414  Q
    |||||| ||| | | | || ||||| ||| |||||||||| ||| |||| | |||||||||||    
T  37324569 catgattcaatgatctcca-tttaaaaaaagatcaaacggctaagaataaaagatttaataag 37324630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 290 - 418
Target Start/End: Original strand, 2421111 - 2421239
Alignment:
Q  290 gaagaagatggagggaaaaaattaggtgtttgtggttcaatataagctacaatagacccctccatgatccaacggttttcattttaag-aaatgatcaaa 388  Q
    |||||||||||||| |||||||||||||||||||||||| ||||| |||||||||| | |||  |||||||| ||| | ||||| ||| ||| |||||||    
T  2421111 gaagaagatggagg-aaaaaattaggtgtttgtggttcattataaactacaatagatctctcattgatccaatggtctccatttaaagaaaaagatcaaa 2421209  T
Q  389 cggttaaaaatatatgatttaataaggtct 418  Q
    |||||||||||| | |||||||||||||||    
T  2421210 cggttaaaaataaaagatttaataaggtct 2421239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 253 - 418
Target Start/End: Complemental strand, 44606472 - 44606309
Alignment:
Q  253 atgagagttttatttggggatgaagaagaatgatagggaagaagatggagggaaaaaattaggtgtttgtggttcaatataagctacaatagacccctcc 352  Q
    ||||||||||||||||||||||||||||||  || |||||||||||||| | ||||||| |||||||||||||||| ||| || || |||||| | || |    
T  44606472 atgagagttttatttggggatgaagaagaac-atggggaagaagatggatg-aaaaaatcaggtgtttgtggttcattattaggtaaaatagatctcttc 44606375  T
Q  353 atgatccaacggttttcattttaagaaatgatcaaacggttaaaaatatatgatttaataaggtct 418  Q
    |||||| |||  | | ||||| || ||| ||||||||||||||||||| | ||||||| |||||||    
T  44606374 atgatctaacaatatccatttaaaaaaaagatcaaacggttaaaaataaaagatttaacaaggtct 44606309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 290 - 414
Target Start/End: Complemental strand, 35944207 - 35944082
Alignment:
Q  290 gaagaagatggagggaaaaaa-ttaggtgtttgtggttcaatataagctacaatagacccctccatgatccaacggttttcattttaagaaatgatcaaa 388  Q
    |||||||||||||| |||||| |||| |||| | |||||| |||||| |||||||||||||| |||||||||||| ||| ||||| ||  || |||||||    
T  35944207 gaagaagatggaggaaaaaaaattagttgttagcggttcattataagttacaatagaccccttcatgatccaacgatttccatttaaaataaagatcaaa 35944108  T
Q  389 cggttaaaaatatatgatttaataag 414  Q
    | |||||||||| | |||||||||||    
T  35944107 cagttaaaaataaaagatttaataag 35944082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 286 - 418
Target Start/End: Original strand, 13366866 - 13366996
Alignment:
Q  286 tagggaagaagatggagggaaaaaattaggtgtttgtggttcaatataagctacaatagacccctccatgatccaacggttttcattttaagaaatgatc 385  Q
    |||||||||| ||||||| |||||||||||||||||||||||| || ||||||||||||| | || | ||||||||| || | || || || |||| |||    
T  13366866 tagggaagaaaatggagg-aaaaaattaggtgtttgtggttcattacaagctacaatagatctctacttgatccaacagtctccaattaaaaaaat-atc 13366963  T
Q  386 aaacggttaaaaatatatgatttaataaggtct 418  Q
    ||||||||||||||| | | |||||||||||||    
T  13366964 aaacggttaaaaataaaaggtttaataaggtct 13366996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 304 - 397
Target Start/End: Complemental strand, 8395279 - 8395186
Alignment:
Q  304 gaaaaaattaggtgtttgtggttcaatataagctacaatagacccctccatgatccaacggttttcattttaagaaatgatcaaacggttaaaa 397  Q
    |||||||||||||| ||||||||||  ||||||||| |||||  ||||||||||| |||| ||||||||| || ||| ||||||||||||||||    
T  8395279 gaaaaaattaggtggttgtggttcaccataagctacgatagattcctccatgatcaaacgattttcatttaaaaaaacgatcaaacggttaaaa 8395186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 288 - 416
Target Start/End: Complemental strand, 8095647 - 8095518
Alignment:
Q  288 gggaagaagatggagggaaaaaattaggtgtttgtggttcaatataagctacaatagacccctccatgatccaacggttttcattttaag--aaatgatc 385  Q
    |||||||||||||||| |||||||||||||||||||||| | ||||| |||||||||| | |||  |||||||||||| | ||||| |||  |||  |||    
T  8095647 gggaagaagatggagg-aaaaaattaggtgtttgtggtttattataacctacaatagatctctctttgatccaacggtctccatttgaagaaaaaaaatc 8095549  T
Q  386 aaacggttaaaaatatatgatttaataaggt 416  Q
    ||| ||||||| ||| | |||||||||||||    
T  8095548 aaatggttaaagatacaagatttaataaggt 8095518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 285 - 341
Target Start/End: Complemental strand, 29738573 - 29738518
Alignment:
Q  285 atagggaagaagatggagggaaaaaattaggtgtttgtggttcaatataagctacaa 341  Q
    ||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||    
T  29738573 atagggaagaagatggagg-aaaaaattaggtgtttgtgattcattataagctacaa 29738518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 346 - 418
Target Start/End: Complemental strand, 37472644 - 37472572
Alignment:
Q  346 cccctccatgatccaacggttttcattttaagaaatgatcaaacggttaaaaatatatgatttaataaggtct 418  Q
    |||||||||||| ||||| ||||||||| || |||  |||||| |||||||||||| ||||||||||||||||    
T  37472644 cccctccatgattcaacgattttcatttaaaaaaaaaatcaaatggttaaaaatatgtgatttaataaggtct 37472572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 353 - 418
Target Start/End: Complemental strand, 20308840 - 20308775
Alignment:
Q  353 atgatccaacggttttcattttaagaaatgatcaaacggttaaaaatatatgatttaataaggtct 418  Q
    ||||||||||||| | ||||| || ||| ||||||||  ||||||||| | |||||||||||||||    
T  20308840 atgatccaacggtctccatttaaaaaaaagatcaaaccattaaaaataaaagatttaataaggtct 20308775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 353 - 418
Target Start/End: Complemental strand, 21095473 - 21095408
Alignment:
Q  353 atgatccaacggttttcattttaagaaatgatcaaacggttaaaaatatatgatttaataaggtct 418  Q
    ||||||||||||| | ||||| || ||| ||||||||  ||||||||| | |||||||||||||||    
T  21095473 atgatccaacggtctccatttaaaaaaaagatcaaaccattaaaaataaaagatttaataaggtct 21095408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 99; Significance: 1e-48; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 232 - 418
Target Start/End: Complemental strand, 49333336 - 49333153
Alignment:
Q  232 caagatgatgaatatagatgaatgagagttttatttggggatgaagaagaatgatagggaagaagatggagggaaaaaattaggtgtttgtggttcaata 331  Q
    |||||||||||||| ||||||| | |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||| ||    
T  49333336 caagatgatgaataaagatgaaagggagttttatttggggatgaagaagaaagatagggaaga-gatggagggaaaaaattaggtgtttgtgcttcatta 49333238  T
Q  332 taagctacaatagacccctccatgatccaacggttttcattttaagaaatgatcaaacggttaaaaatatatgatttaataaggtct 418  Q
    ||||||||||||||| ||| |||||||||||| | | || ||||| |||  |||||||||||||||||| | || ||||||||||||    
T  49333237 taagctacaatagactccttcatgatccaacgatctaca-tttaaaaaaaaatcaaacggttaaaaataaaaga-ttaataaggtct 49333153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 257 - 414
Target Start/End: Complemental strand, 51400545 - 51400389
Alignment:
Q  257 gagttttatttggggatgaagaagaatgatagggaagaagatggagggaaaaaattaggtgtttgtggttcaatataagctacaataga-cccctccatg 355  Q
    ||||||||||||||||||||||||||  ||| ||||||||||||||| |||||||||||||||||||||| | | |||| ||||||||| ||||||||||    
T  51400545 gagttttatttggggatgaagaagaac-atatggaagaagatggagg-aaaaaattaggtgtttgtggtttattgtaagttacaatagaccccctccatg 51400448  T
Q  356 atccaacggttttcattttaagaaatgatcaaacggttaaaaatatatgatttaataag 414  Q
    |||||||||| | ||||| ||  || |||||||| |||||||||| | |||||| ||||    
T  51400447 atccaacggtctccatttaaaacaaagatcaaacagttaaaaataaaagatttagtaag 51400389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 288 - 416
Target Start/End: Original strand, 12062198 - 12062328
Alignment:
Q  288 gggaagaagatggagggaaaa-aattaggtgtttgtggttcaatataagctacaatagacccctccatgatccaacggttttcattttaag-aaatgatc 385  Q
    |||||||||||||||| |||| |||||||||||||||||||| ||||| ||||| |||| | |||| |||||||||||| | ||||| ||| |||  |||    
T  12062198 gggaagaagatggaggaaaaaaaattaggtgtttgtggttcattataacctacagtagatctctccttgatccaacggtctccatttgaagaaaaaaatc 12062297  T
Q  386 aaacggttaaaaatatatgatttaataaggt 416  Q
    ||| ||||||||||| | |||||||||||||    
T  12062298 aaatggttaaaaatacaagatttaataaggt 12062328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 288 - 414
Target Start/End: Complemental strand, 23560120 - 23559993
Alignment:
Q  288 gggaagaagatggagggaaaaaattaggtgtttgtggttcaatataagctacaatagacccctccatgatccaacggttttcattt-taagaaatgatca 386  Q
    ||||||||||||||||  ||||||||||||||||||||||| |||||||||||||| | | || | |||||||||||| | |||||  || ||| |||||    
T  23560120 gggaagaagatggaggagaaaaattaggtgtttgtggttcattataagctacaatatatctcttcttgatccaacggtctccatttaaaaaaaaagatca 23560021  T
Q  387 aacggttaaaaatatatgatttaataag 414  Q
    |||  ||||||||| | |||||||||||    
T  23560020 aacaattaaaaataaaagatttaataag 23559993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 304 - 418
Target Start/End: Original strand, 35174215 - 35174328
Alignment:
Q  304 gaaaaaattaggtgtttgtggttcaatataagctacaatagacccctccatgatccaacggttttcattttaagaaatgatcaaacggttaaaaatatat 403  Q
    ||||||||||||||||||||||| | ||||| |||||||||| ||||||||||||||| ||| | ||||| ||  || |||||||| |||||||||| |     
T  35174215 gaaaaaattaggtgtttgtggtttattataaactacaatagatccctccatgatccaagggtctccatttaaaacaaagatcaaaccgttaaaaata-aa 35174313  T
Q  404 gatttaataaggtct 418  Q
     ||||||||||||||    
T  35174314 aatttaataaggtct 35174328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 288 - 362
Target Start/End: Original strand, 48867250 - 48867324
Alignment:
Q  288 gggaagaagatggagggaaaaaattaggtgtttgtggttcaatataagctacaatagacccctccatgatccaac 362  Q
    |||||||||||| ||  ||||||||||||| |||||||| | |||||||||||||||||||||||||||| ||||    
T  48867250 gggaagaagatgaagacaaaaaattaggtggttgtggtttattataagctacaatagacccctccatgattcaac 48867324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 304 - 397
Target Start/End: Original strand, 26798737 - 26798831
Alignment:
Q  304 gaaaaaattaggtgtttgtggttcaatataagctacaatagacccctccatgatccaacggttttcattt-taagaaatgatcaaacggttaaaa 397  Q
    |||||||||||||| ||||||||||  |||||||||||||||  ||||||||||| |||  |||||||||  || ||| |||||||| |||||||    
T  26798737 gaaaaaattaggtggttgtggttcaccataagctacaatagattcctccatgatcaaacaattttcatttaaaaaaaacgatcaaacagttaaaa 26798831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 86; Significance: 6e-41; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 238 - 414
Target Start/End: Original strand, 25154700 - 25154878
Alignment:
Q  238 gatgaatatagatgaatgagagttttatttggggatgaagaagaatgatagggaagaagatggagggaaaaaattaggtgtttgtggttcaatataagct 337  Q
    ||||| || ||||||||||||||||||||||||||| | |||||||| || ||||||||||||||| |||||||||||||| || |||||| ||||||||    
T  25154700 gatgattaaagatgaatgagagttttatttggggataacgaagaatggtaaggaagaagatggaggaaaaaaattaggtgtgtggggttcattataagct 25154799  T
Q  338 acaatagacccctccatgatccaacggttttcatttt---aagaaatgatcaaacggttaaaaatatatgatttaataag 414  Q
    ||| |||| |||| | |||||||||||| ||||||||   || ||| ||||||||||||||||||| | |||||||||||    
T  25154800 acagtagatcccttc-tgatccaacggtcttcattttaaaaaaaaacgatcaaacggttaaaaataaaagatttaataag 25154878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 285 - 418
Target Start/End: Original strand, 46458525 - 46458659
Alignment:
Q  285 atagggaagaagatggagggaaaaaattaggtgtttgtggttcaatataagctacaatagacccctccatgatccaacggttttcattt--taagaaatg 382  Q
    ||||||||||||||||||| |||||||||||||||||||||||| |||||| ||||||||| | || |||||||||||| |   |||||   || ||| |    
T  46458525 atagggaagaagatggagg-aaaaaattaggtgtttgtggttcattataaggtacaatagatctcttcatgatccaacgatccacatttaacaaaaaaag 46458623  T
Q  383 atcaaacggttaaaaatatatgatttaataaggtct 418  Q
    ||||||||||||||| ||| ||||||||||||||||    
T  46458624 atcaaacggttaaaactatgtgatttaataaggtct 46458659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 271 - 397
Target Start/End: Original strand, 131798 - 131924
Alignment:
Q  271 gatgaagaagaatgataggg-aagaagatggagggaaaaaattaggtgtttgtggttcaatataagctacaatagacccctccatgatccaacggttttc 369  Q
    ||||||||||| || ||||| ||||||||| ||  ||||||||||||| |||||||||| |||||||||||||||| | ||||||||||||||  | |||    
T  131798 gatgaagaagattggtaggggaagaagatgaaga-aaaaaattaggtggttgtggttcattataagctacaatagatctctccatgatccaacaatcttc 131896  T
Q  370 attttaagaaatgatcaaacggttaaaa 397  Q
    |||| |||||| ||||||||||||||||    
T  131897 atttaaagaaaagatcaaacggttaaaa 131924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 304 - 418
Target Start/End: Complemental strand, 10256407 - 10256293
Alignment:
Q  304 gaaaaaattaggtgtttgtggttcaatataagctacaatagacccctccatgatccaacggttttcattttaagaaatgatcaaacggttaaaaatatat 403  Q
    ||||||||||||||||||||||| | ||||| ||| |||||| |||||||||||||||| || | ||||| ||  || |||| ||| |||||||||| |     
T  10256407 gaaaaaattaggtgtttgtggtttattataaactataatagatccctccatgatccaacagtctccatttaaaataaagatcgaaccgttaaaaataaaa 10256308  T
Q  404 gatttaataaggtct 418  Q
    |||||||||||||||    
T  10256307 gatttaataaggtct 10256293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 285 - 399
Target Start/End: Complemental strand, 24872292 - 24872179
Alignment:
Q  285 atagggaagaagatggagggaaaaaattaggtgtttgtggttcaatataagctacaatagacccctccatgatccaacggttttcattttaagaaatgat 384  Q
    ||||||||||||||||||| ||||| |||||||||||||||| | |||||| ||  ||||| ||||||||||| ||||||| | |||||  | ||| |||    
T  24872292 atagggaagaagatggagg-aaaaatttaggtgtttgtggtttattataagttatgatagatccctccatgattcaacggtctccatttataaaaaagat 24872194  T
Q  385 caaacggttaaaaat 399  Q
    |||| ||||||||||    
T  24872193 caaaaggttaaaaat 24872179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 75; Significance: 2e-34; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 268 - 413
Target Start/End: Complemental strand, 31738682 - 31738538
Alignment:
Q  268 ggggatgaagaagaatgatagggaagaagatggagggaaaaaattaggtgtttgtggttcaatataagctacaatagacccctccatgatccaacggttt 367  Q
    |||||||||||||||  ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| | ||||||||||||||||| |    
T  31738682 ggggatgaagaagaac-atagggaagaagatggagg-aaaaaattaggtgtttgtggttcattataagctacaatagatctctccatgatccaacggtct 31738585  T
Q  368 tcatttt-aagaaatgatcaaacggttaaaaatatatgatttaataa 413  Q
     |||||| || |||  |||||| |||||||||| | |||||||||||    
T  31738584 ccattttaaaaaaaatatcaaatggttaaaaatttgtgatttaataa 31738538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 254 - 418
Target Start/End: Original strand, 293423 - 293586
Alignment:
Q  254 tgagagttttatttggggatgaagaagaatgatagggaagaagatggagggaaaaaat-taggtgtttgtggttcaatataagctacaatagacccctcc 352  Q
    ||||||||||||||| |||||||||||||  | |||||||||||| |||  ||||||  ||||||||||||||||| |||||||||||||||| | ||||    
T  293423 tgagagttttatttgaggatgaagaagaac-acagggaagaagatagagtaaaaaaaaataggtgtttgtggttcattataagctacaatagatctctcc 293521  T
Q  353 atgatccaacggttttcattttaagaaatgatcaaacggttaaaaatatatgatttaataaggtct 418  Q
    ||||||||||| | | || ||||| ||| ||||||| |||||||||||| | ||||||||||||||    
T  293522 atgatccaacgatctcca-tttaaaaaaagatcaaatggttaaaaatatgttatttaataaggtct 293586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 288 - 410
Target Start/End: Original strand, 14327241 - 14327368
Alignment:
Q  288 gggaagaagatggagggaaaaaattaggtgtttgtggttcaatataagctacaatagacccctccatgatccaacg---gttttcattttaa--gaaatg 382  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||||||||| || | | |||| ||||||||||   || ||||||| ||   ||| |    
T  14327241 gggaagaagatggaggaaaaaaattaggtgtttgtggttcattataagctacagtatatctctccttgatccaacgacagtcttcatttaaaagaaaaag 14327340  T
Q  383 atcaaacggttaaaaatatatgatttaa 410  Q
    |||||||||||||||||| | |||||||    
T  14327341 atcaaacggttaaaaataaaagatttaa 14327368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 288 - 410
Target Start/End: Original strand, 14420251 - 14420378
Alignment:
Q  288 gggaagaagatggagggaaaaaattaggtgtttgtggttcaatataagctacaatagacccctccatgatccaacg---gttttcattttaa--gaaatg 382  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||||||||| || | | |||| ||||||||||   || ||||||| ||   ||| |    
T  14420251 gggaagaagatggaggaaaaaaattaggtgtttgtggttcattataagctacagtatatctctccttgatccaacgacagtcttcatttaaaagaaaaag 14420350  T
Q  383 atcaaacggttaaaaatatatgatttaa 410  Q
    |||||||||||||||||| | |||||||    
T  14420351 atcaaacggttaaaaataaaagatttaa 14420378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 272 - 418
Target Start/End: Complemental strand, 16268857 - 16268711
Alignment:
Q  272 atgaagaagaatgatag-ggaagaagatggagggaaaaaattaggtgtttgtggttcaatataagctacaatagacccctccatgatccaacggttttca 370  Q
    |||||||||| || ||| ||||||||||| ||  ||||||||||||| |||||||||| ||||||||| |||||| ||||||||||||||||  | ||||    
T  16268857 atgaagaagattggtagaggaagaagatgaaga-aaaaaattaggtggttgtggttcattataagctaaaatagatccctccatgatccaacaatcttca 16268759  T
Q  371 ttttaagaaatgatcaaacggttaaaaatatatgatttaataaggtct 418  Q
    ||  ||||||  ||||||||| ||||| || |  ||||||||| ||||    
T  16268758 ttcaaagaaaaaatcaaacggataaaattaaaaaatttaataaagtct 16268711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 291 - 397
Target Start/End: Original strand, 27439992 - 27440100
Alignment:
Q  291 aagaagatggagggaaaaaattaggtgtttgtggttcaatataagctacaataga--cccctccatgatccaacggttttcattttaagaaatgatcaaa 388  Q
    ||||||||| ||  ||||||| ||||| |||||||| | |||||||||||  |||  |||||| ||||||||||  |||||||||||| ||| |||||||    
T  27439992 aagaagatgaagaaaaaaaatgaggtgattgtggtttattataagctacagaagatccccctctatgatccaacaattttcattttaaaaaaagatcaaa 27440091  T
Q  389 cggttaaaa 397  Q
    |||||||||    
T  27440092 cggttaaaa 27440100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 271 - 362
Target Start/End: Complemental strand, 9927923 - 9927832
Alignment:
Q  271 gatgaagaagaatgataggg-aagaagatggagggaaaaaattaggtgtttgtggttcaatataagctacaatagacccctccatgatccaac 362  Q
    ||||||||||| || ||||| ||||||||| | | ||||||||||||| |||| ||||| |||| |||||||||||  |||||||||||||||    
T  9927923 gatgaagaagattggtaggggaagaagatg-acgaaaaaaattaggtggttgtagttcattatatgctacaatagatacctccatgatccaac 9927832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 272 - 396
Target Start/End: Complemental strand, 22298916 - 22298795
Alignment:
Q  272 atgaagaagaatgata-gggaagaagatggagggaaaaaattaggtgtttgtggttcaatataagctacaatagacccctccatgatccaacggttttca 370  Q
    |||||||||| ||||| |||||||||||| ||  ||| | ||||||  |||||||||| |||||||||||||||| ||||  |||||||||   | || |    
T  22298916 atgaagaagattgataagggaagaagatgaaga-aaatacttaggttgttgtggttcattataagctacaatagatcccttaatgatccaa---tcttta 22298821  T
Q  371 ttttaagaaatgatcaaacggttaaa 396  Q
    ||| || ||| |||||||||||||||    
T  22298820 tttaaaaaaaagatcaaacggttaaa 22298795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 305 - 418
Target Start/End: Original strand, 6140193 - 6140306
Alignment:
Q  305 aaaaaattaggtgtttgtggttcaatataagctacaatagacccctccatgatccaacggttttcattttaagaaatgatcaaacggttaaaaatatatg 404  Q
    |||||||||||||||||||||| | |||||||||||||||| ||||||||||||||||||| | ||||| || ||| |||||||| |||||||||| | |    
T  6140193 aaaaaattaggtgtttgtggtttattataagctacaatagatccctccatgatccaacggtctccatttaaaaaaaagatcaaactgttaaaaataaaag 6140292  T
Q  405 atttaataaggtct 418  Q
    ||||||||||||||    
T  6140293 atttaataaggtct 6140306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 257 - 413
Target Start/End: Original strand, 52660001 - 52660155
Alignment:
Q  257 gagttttatttggggatgaagaagaatgatagggaagaagatggagggaaaaaattaggtgtttgtggttcaatataagctacaatagacccctccatga 356  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||| |||||||||||||||||||||| | | ||||| ||||||||   ||||||||    
T  52660001 gagttttatttggggatgaagaagaac-atagggaagaagatggagg-aaaaaattaggtgtttgtggtttattgtaagcaacaatagatttctccatga 52660098  T
Q  357 tccaacggttttcattttaagaaatgatcaaacggttaaaaatatatgatttaataa 413  Q
    ||||||||| | ||||| ||  || |||||||| |||||||||  | ||||||||||    
T  52660099 tccaacggtctccatttaaaacaaagatcaaacagttaaaaatgaaagatttaataa 52660155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 257 - 365
Target Start/End: Complemental strand, 28102397 - 28102291
Alignment:
Q  257 gagttttatttggggatgaagaagaatgatagggaagaagatggagggaaaaaattaggtgtttgtggttcaatataagctacaatagacccctccatga 356  Q
    ||||||||||||||||||||||||||  | ||||||||||| ||||| |||||||||||||| ||||||| |  |||| |||||||||| | ||||||||    
T  28102397 gagttttatttggggatgaagaagaac-acagggaagaagaaggagg-aaaaaattaggtgtgtgtggtttataataacctacaatagatctctccatga 28102300  T
Q  357 tccaacggt 365  Q
    |||||||||    
T  28102299 tccaacggt 28102291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 304 - 418
Target Start/End: Complemental strand, 50530787 - 50530673
Alignment:
Q  304 gaaaaaattaggtgtttgtggttcaatataagctacaatagacccctccatgatccaacggttttcattttaagaaatgatcaaacggttaaaaatatat 403  Q
    ||||||||||||||||||||||| | ||||| |||||||||| |||||||||||||||| || | ||||| ||  || |||| ||| |||||||||| |     
T  50530787 gaaaaaattaggtgtttgtggtttattataaactacaatagatccctccatgatccaacagtctccatttaaaataaagatcgaaccgttaaaaataaaa 50530688  T
Q  404 gatttaataaggtct 418  Q
     ||||||||||||||    
T  50530687 aatttaataaggtct 50530673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 257 - 416
Target Start/End: Original strand, 31712291 - 31712450
Alignment:
Q  257 gagttttatttggggatgaagaagaatgatagggaagaagatggagggaaaa-aattaggtgtttgtggttcaatataagctacaatagacccctccatg 355  Q
    ||||||||||||||||||||||||||  | |  |||||| | ||||| |||| |||||||||| ||||||| |  |||| |||||||||| | |||||||    
T  31712291 gagttttatttggggatgaagaagaac-acatagaagaaaaaggaggaaaaaaaattaggtgtatgtggtttataataacctacaatagatctctccatg 31712389  T
Q  356 atccaacggttttcattttaagaaatgatcaaacggttaaaaatatatgatttaataaggt 416  Q
    |||||||||| | | ||| || ||| |||||||||||| |||||  | |||||||||||||    
T  31712390 atccaacggtctccttttaaaaaaaagatcaaacggtttaaaatgaaagatttaataaggt 31712450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 288 - 397
Target Start/End: Original strand, 48207536 - 48207644
Alignment:
Q  288 gggaagaagatggagggaaaaaattaggtgtttgtggttcaatataagctacaatagacccctccatgatccaacggttttcattttaagaaatgatcaa 387  Q
    |||||||||||| ||  ||| ||||||||| |||| ||||| |||||||||||||||| |||||| |||||||||  | |||||||| | ||| ||||||    
T  48207536 gggaagaagatgaaga-aaataattaggtggttgttgttcattataagctacaatagatccctccgtgatccaacaatcttcatttttaaaaaagatcaa 48207634  T
Q  388 acggttaaaa 397  Q
    ||||||||||    
T  48207635 acggttaaaa 48207644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 305 - 376
Target Start/End: Complemental strand, 17319327 - 17319256
Alignment:
Q  305 aaaaaattaggtgtttgtggttcaatataagctacaatagacccctccatgatccaacggttttcattttaa 376  Q
    ||||||||||||| |||| ||||| ||||||||| |||||||||||||||||||||||  | ||||||||||    
T  17319327 aaaaaattaggtgattgtagttcattataagctagaatagacccctccatgatccaacaatcttcattttaa 17319256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 1e-29; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 285 - 418
Target Start/End: Complemental strand, 10367542 - 10367409
Alignment:
Q  285 atagggaagaagatggagggaaaaaattaggtgtttgtggttcaatataagctacaatagacccctccatgatccaacggttttcatttta-agaaatga 383  Q
    ||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||||  ||| |||||||||||||| | | ||| | | ||| ||    
T  10367542 atagggaagaagatggagg-aaaaaattaggtgtttgtgattcattataagctacaatagattccttcatgatccaacggtctccgtttaacaaaaaaga 10367444  T
Q  384 tcaaacggttaaaaatatatgatttaataaggtct 418  Q
    |||||||||||||| ||| ||||||||||||||||    
T  10367443 tcaaacggttaaaagtatgtgatttaataaggtct 10367409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 285 - 418
Target Start/End: Original strand, 37868852 - 37868986
Alignment:
Q  285 atagggaagaagatggagggaaaaaattaggtgtttgtggttcaatataagctacaatagacccctccatgatccaacggttttcatttta-agaaatga 383  Q
    ||||||||||||||||||| ||||||||||||||||||| |||| |||||||||||||||| |||| |||||||||||  | | | ||| | | ||| ||    
T  37868852 atagggaagaagatggaggaaaaaaattaggtgtttgtgattcattataagctacaatagatcccttcatgatccaacaatctccgtttaacaaaaaaga 37868951  T
Q  384 tcaaacggttaaaaatatatgatttaataaggtct 418  Q
    |||||||||||||| ||| ||||||||||||||||    
T  37868952 tcaaacggttaaaagtatgtgatttaataaggtct 37868986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 257 - 416
Target Start/End: Complemental strand, 7037296 - 7037138
Alignment:
Q  257 gagttttatttggggatgaagaagaatgatagggaagaagatggagggaaaaaattaggtgtttgtggttcaatataagctacaatagacccctccatga 356  Q
    ||||||||||||| ||||||||||||  | || |||||||| ||||| |||||||||||||| ||||||| |  |||| |||||||||| | ||||||||    
T  7037296 gagttttatttggtgatgaagaagaac-acagagaagaagaaggaggaaaaaaattaggtgtgtgtggtttataataacctacaatagatctctccatga 7037198  T
Q  357 tccaacggttttcattttaagaaatgatcaaacggttaaaaatatatgatttaataaggt 416  Q
    ||||||||| | | ||| || ||| ||||||||||||||||||  | |||||||||||||    
T  7037197 tccaacggtctccttttaaaaaaaagatcaaacggttaaaaatgaaagatttaataaggt 7037138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 285 - 418
Target Start/End: Original strand, 12959518 - 12959651
Alignment:
Q  285 atagggaagaagatggagggaaaaaattaggtgtttgtggttcaatataagctacaatagacccctccatgatccaacggttttcatttta-agaaatga 383  Q
    |||||||||||||| |||| ||||||||||||||||||| |||| |||||| ||||||||| |||| ||||||||||| || | | ||| | | ||| ||    
T  12959518 atagggaagaagatagagg-aaaaaattaggtgtttgtgattcattataaggtacaatagatcccttcatgatccaacagtctccgtttaacaaaaaaga 12959616  T
Q  384 tcaaacggttaaaaatatatgatttaataaggtct 418  Q
    ||||| |||||||||||| ||||||||||||||||    
T  12959617 tcaaaaggttaaaaatatgtgatttaataaggtct 12959651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 286 - 418
Target Start/End: Complemental strand, 14509510 - 14509379
Alignment:
Q  286 tagggaagaagatggagggaaaaaattaggtgtttgtggttcaatataagctacaatagacccctccatgatccaacggttttcattttaagaaatgatc 385  Q
    |||||||||||||||||| |||||||||||||||||||||||| || |||||||| |||| | || | ||||||||| || | || || || |||  |||    
T  14509510 tagggaagaagatggagg-aaaaaattaggtgtttgtggttcattacaagctacagtagatctctacttgatccaacagtctccaattaaaaaaaatatc 14509412  T
Q  386 aaacggttaaaaatatatgatttaataaggtct 418  Q
    ||||||||||||||| | | |||||||||||||    
T  14509411 aaacggttaaaaataaaaggtttaataaggtct 14509379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 248 - 310
Target Start/End: Complemental strand, 29077002 - 29076940
Alignment:
Q  248 gatgaatgagagttttatttggggatgaagaagaatgatagggaagaagatggagggaaaaaa 310  Q
    ||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||| ||||||    
T  29077002 gatgaatgaaagttttatttggggatgaagaagaacgataaggaagaagatggaggaaaaaaa 29076940  T

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Target: chr2; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 273 - 397
Target Start/End: Original strand, 42249585 - 42249709
Alignment:
Q  273 tgaagaagaatgataggg-aagaagatggagggaaaaaattaggtgtttgtggttcaatataagctacaatagacccctccatgatccaacggttttcat 371  Q
    ||||||||| |||||||| ||||||||| ||  ||| ||||||||| |||| ||||| ||||||||||||||||  ||||| |||||||||  | |||||    
T  42249585 tgaagaagattgataggggaagaagatgaaga-aaataattaggtggttgttgttcattataagctacaatagattcctccgtgatccaacaatcttcat 42249683  T
Q  372 tttaagaaatgatcaaacggttaaaa 397  Q
    ||| | ||| ||||||||||||||||    
T  42249684 ttttaaaaaagatcaaacggttaaaa 42249709  T

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Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 311 - 416
Target Start/End: Original strand, 11575326 - 11575430
Alignment:
Q  311 ttaggtgtttgtggttcaatataagctacaatagacccctccatgatccaacggttttcattttaagaaatgatcaaacggttaaaaatatatgatttaa 410  Q
    |||||| ||||||||| | |||||||||||||||| |||| ||||||||||| || | || ||||| ||| ||||||||||||| ||||  | |||||||    
T  11575326 ttaggtatttgtggtttattataagctacaatagatcccttcatgatccaactgtctcca-tttaaaaaaagatcaaacggttagaaatgaaagatttaa 11575424  T
Q  411 taaggt 416  Q
    ||||||    
T  11575425 taaggt 11575430  T

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Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 305 - 418
Target Start/End: Complemental strand, 35799795 - 35799682
Alignment:
Q  305 aaaaaattaggtgtttgtggttcaatataagctacaatagacccctccatgatccaacggttttcatttt-aagaaatgatcaaacggttaaaaatatat 403  Q
    ||||||||||||| |||||||| | ||||| ||||||| || ||||||||||||||||  | || ||||| || ||| |||||||||||||||| ||||     
T  35799795 aaaaaattaggtggttgtggtttattataaactacaat-gatccctccatgatccaacaatcttaattttaaaaaaaagatcaaacggttaaaattataa 35799697  T
Q  404 gatttaataaggtct 418  Q
     ||||||||| ||||    
T  35799696 catttaataaagtct 35799682  T

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Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 285 - 418
Target Start/End: Original strand, 25570689 - 25570816
Alignment:
Q  285 atagggaagaagatggagggaaaaaattaggtgtttgtggttcaatataagctacaatagacccctccatgatccaacggttttcatttt-aagaaatga 383  Q
    |||||||||||||||||||      ||||||||||||||||| | ||||||  |||  ||  |||||| |||||||| |||||||||||| || ||| ||    
T  25570689 atagggaagaagatggagg------attaggtgtttgtggtttattataagacacagcag-tccctccgtgatccaatggttttcattttaaaaaaaaga 25570781  T
Q  384 tcaaacggttaaaaatatatgatttaataaggtct 418  Q
    ||||||  ||||||||| |  ||||||||||||||    
T  25570782 tcaaacctttaaaaataaaatatttaataaggtct 25570816  T

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Target: scaffold0122 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 286 - 418
Target Start/End: Complemental strand, 16247 - 16115
Alignment:
Q  286 tagggaagaagatggagggaaaaaattaggtgtttgtggttcaatataagctacaatagacccctccatgatccaacggttttcattttaagaaatgatc 385  Q
    |||||||||||||||||| |||||||||||||||||||||||| || ||||||||||||| | || | ||||||||| || | || ||||| |||  |||    
T  16247 tagggaagaagatggaggaaaaaaattaggtgtttgtggttcattacaagctacaatagatctctacttgatccaacagtctccaatttaaaaaaatatc 16148  T
Q  386 aaacggttaaaaatatatgatttaataaggtct 418  Q
    ||||||||||||||| | | |||||||||||||    
T  16147 aaacggttaaaaataaaaggtttaataaggtct 16115  T

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Target: scaffold0178 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 288 - 397
Target Start/End: Complemental strand, 1508 - 1400
Alignment:
Q  288 gggaagaagatggagggaaaaaattaggtgtttgtggttcaatataagctacaatagacccctccatgatccaacggttttcattttaagaaatgatcaa 387  Q
    |||||||||||| ||  ||| ||||||||| |||| ||||| |||||||||||||||| |||||| ||||  |||  | |||||||||| ||| ||||||    
T  1508 gggaagaagatgaaga-aaataattaggtggttgttgttcattataagctacaatagatccctccgtgattgaacaatcttcattttaaaaaaagatcaa 1410  T
Q  388 acggttaaaa 397  Q
    ||||||||||    
T  1409 acggttaaaa 1400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 291 - 397
Target Start/End: Complemental strand, 47369 - 47261
Alignment:
Q  291 aagaagatggagggaaaaaattaggtgtttgtggttcaatataagctacaataga--cccctccatgatccaacggttttcattttaagaaatgatcaaa 388  Q
    ||||||||| ||  ||||||| ||||| |||||||| | |||||||||||  |||  |||||| ||||||||||  |||||||||||| ||| |||||||    
T  47369 aagaagatgaagaaaaaaaatgaggtgattgtggtttattataagctacagaagatccccctctatgatccaacaattttcattttaaaaaaagatcaaa 47270  T
Q  389 cggttaaaa 397  Q
    |||||||||    
T  47269 cggttaaaa 47261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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