View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8342_high_1 (Length: 410)
Name: NF8342_high_1
Description: NF8342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8342_high_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 103; Significance: 4e-51; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 78 - 287
Target Start/End: Complemental strand, 35446355 - 35446145
Alignment:
| Q |
78 |
tgattttgagttatttaggaacgatttttgtatatttaacnnnnnnnnaaggagtatatttaatatttaattatttgtaaggcaagnnnnnnnnaaaaat |
177 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
35446355 |
tgattttgagttaattaggaacgatttttgtatatttaa-atttttttaaggagtatatttaatatttaattatttgtaaggcaagttttttt-aaaaat |
35446258 |
T |
|
| Q |
178 |
aaataaaatctgattctannnnnnnnn---accaaaacaattattaaaatccgattctattatattaattaaggcaagaattttgaaaattaaataaatc |
274 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
35446257 |
aaataaaatctgattctattttttttttttaccaaaacaattattaaaatccgattctattatattaattaaggcaagtattttgaaaattaaataaatc |
35446158 |
T |
|
| Q |
275 |
agattctattatc |
287 |
Q |
| |
|
||||||||||||| |
|
|
| T |
35446157 |
agattctattatc |
35446145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 366 - 394
Target Start/End: Complemental strand, 35446066 - 35446038
Alignment:
| Q |
366 |
cctataatattaaacatgaattatcatta |
394 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
35446066 |
cctataatattaaacatgaattatcatta |
35446038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University