View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8342_high_3 (Length: 285)
Name: NF8342_high_3
Description: NF8342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8342_high_3 |
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| [»] scaffold0179 (1 HSPs) |
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| [»] scaffold0010 (1 HSPs) |
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| [»] scaffold0894 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 7 - 279
Target Start/End: Original strand, 3300432 - 3300707
Alignment:
| Q |
7 |
ggacatcatcaaaccttaaagcagcgttataccagattatgtgcatgaggaccatgatatctatttaattgctatctgaaatctgatttttaactggaaa |
106 |
Q |
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|||||||| |||||| ||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||| |
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| T |
3300432 |
ggacatcaacaaaccgtaaagcagcgttataccagattatgtgcatgaggat-atgacatatatttaattgctatctgaaatctgatttttaactggaaa |
3300530 |
T |
|
| Q |
107 |
ccttcttactggatcggtgcctgcttggaaaaagaacattgacgtgtaagttattgttctaatactacttgtatgattactttgatcgaacaaagtactt |
206 |
Q |
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|||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||| |
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| T |
3300531 |
ccttcttactggatcggtacctgcttggaaaaagaacatcgacgtgtaagttcttgttctaatattacttgtataattactttgatcgaacaaagtactt |
3300630 |
T |
|
| Q |
207 |
cagttatcatgcggtaatactataaacgtatcatccgttatttc----ttttacctttctaagttaactttgccttt |
279 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||| |
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| T |
3300631 |
cagttatcatgcggtaatactataaacgtatcatccgttatttaaatattttacttttctaagttaactttgtcttt |
3300707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 7 - 77
Target Start/End: Original strand, 36598684 - 36598754
Alignment:
| Q |
7 |
ggacatcatcaaaccttaaagcagcgttataccagattatgtgcatgaggaccatgatatctatttaattg |
77 |
Q |
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|||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
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| T |
36598684 |
ggacatcaacaaaccgtaaagcagcgttataccagattatgtgcatgaggatcatgatatatatttaattg |
36598754 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 7 - 279
Target Start/End: Original strand, 38837098 - 38837365
Alignment:
| Q |
7 |
ggacatcatcaaaccttaaagcagcgttataccagattatgtgcatgaggaccatgatatctatttaattgctatctgaaatctgatttttaactggaaa |
106 |
Q |
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|||||||| |||||| |||||||||||||||||| ||||||| |||||||| |||||||| | ||||||||||||||||||||||||||||||||| |
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| T |
38837098 |
ggacatcaacaaaccataaagcagcgttataccaaattatgtacatgaggatcatgatatat-----attgctatctgaaatctgatttttaactggaaa |
38837192 |
T |
|
| Q |
107 |
ccttcttactggatcggtgcctgcttggaaaaagaacattgacgtgtaagttattgttctaatactacttgtatgattactttgatcgaacaaagtactt |
206 |
Q |
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|||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||| ||||| ||| ||||||||||||||||||||||||| |
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| T |
38837193 |
ccttcttactggatcggtacctgcttggaaaaagaacatcgacgtgtaagttcttgttctaatattacttatataattactttgatcgaacaaagtactt |
38837292 |
T |
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| Q |
207 |
cagttatcatgcggtaatactataaacgtatcatccgttatttcttttacctttctaagttaactttgccttt |
279 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||| |||| |
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| T |
38837293 |
cagttatcatgcggtaatactgtaaacgtatcatccgttatttattttacttttctaagttaactttgtcttt |
38837365 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 177; Significance: 2e-95; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 91 - 279
Target Start/End: Complemental strand, 31255198 - 31255010
Alignment:
| Q |
91 |
gatttttaactggaaaccttcttactggatcggtgcctgcttggaaaaagaacattgacgtgtaagttattgttctaatactacttgtatgattactttg |
190 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31255198 |
gatttttaactggaaaccttctcactggatcggtgcctgcttggaaaaagaacatcgacgtgtaagttattgttctaatactacttgtatgattactttg |
31255099 |
T |
|
| Q |
191 |
atcgaacaaagtacttcagttatcatgcggtaatactataaacgtatcatccgttatttcttttacctttctaagttaactttgccttt |
279 |
Q |
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| T |
31255098 |
atcgaacaaagtacttcagttatcatgtggtaatactataaacgtatcatccgttatttcttttacctttctaagttaactttgccttt |
31255010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 91 - 173
Target Start/End: Complemental strand, 31292181 - 31292099
Alignment:
| Q |
91 |
gatttttaactggaaaccttcttactggatcggtgcctgcttggaaaaagaacattgacgtgtaagttattgttctaatacta |
173 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||| |
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| T |
31292181 |
gatttttaactggaaaccttctcactggatcggtgcctgcttggaaaaagaacgttgacgtgtaagttatttttctactacta |
31292099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 91 - 184
Target Start/End: Original strand, 31419470 - 31419563
Alignment:
| Q |
91 |
gatttttaactggaaaccttcttactggatcggtgcctgcttggaaaaagaacattgacgtgtaagttattgttctaatactacttgtatgatt |
184 |
Q |
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|||||||||| ||||||||||| |||||| | |||||| |||||| ||||||| | ||||| |||||| ||||||||||||| | |||||| |
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| T |
31419470 |
gatttttaaccggaaaccttctgactggaccagtgccttcttggagaaagaacgtgagcgtgtgagttatctttctaatactactagcatgatt |
31419563 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 184
Target Start/End: Complemental strand, 31374355 - 31374262
Alignment:
| Q |
91 |
gatttttaactggaaaccttcttactggatcggtgcctgcttggaaaaagaacattgacgtgtaagttattgttctaatactacttgtatgatt |
184 |
Q |
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||||||||||||||||| || |||||| ||||||| | |||| |||||||||| |||||||||||| ||| ||||||| || ||||||| |
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| T |
31374355 |
gatttttaactggaaacaacctcactggactggtgccttcatggagaaagaacatttacgtgtaagttacctttcaaatactaattatatgatt |
31374262 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0179 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0179
Description:
Target: scaffold0179; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 7 - 77
Target Start/End: Original strand, 25170 - 25240
Alignment:
| Q |
7 |
ggacatcatcaaaccttaaagcagcgttataccagattatgtgcatgaggaccatgatatctatttaattg |
77 |
Q |
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|
|||||||| |||||| |||||||||||||||| |||||||||||||||||| |||||||| |||||||||| |
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| T |
25170 |
ggacatcaacaaaccgtaaagcagcgttatactagattatgtgcatgaggatcatgatatatatttaattg |
25240 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 7 - 71
Target Start/End: Original strand, 8650722 - 8650786
Alignment:
| Q |
7 |
ggacatcatcaaaccttaaagcagcgttataccagattatgtgcatgaggaccatgatatctatt |
71 |
Q |
| |
|
|||||||| |||||| |||||||||||| |||||||||||||||||||||| |||||||| |||| |
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|
| T |
8650722 |
ggacatcaacaaaccgtaaagcagcgttgtaccagattatgtgcatgaggatcatgatatatatt |
8650786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0010 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 77
Target Start/End: Original strand, 246684 - 246754
Alignment:
| Q |
7 |
ggacatcatcaaaccttaaagcagcgttataccagattatgtgcatgaggaccatgatatctatttaattg |
77 |
Q |
| |
|
|||||||| |||||| |||||||||||||||||||||||| ||||| |||| ||| |||| |||||||||| |
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|
| T |
246684 |
ggacatcaacaaaccataaagcagcgttataccagattatatgcataaggatcataatatatatttaattg |
246754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 77
Target Start/End: Complemental strand, 37281514 - 37281444
Alignment:
| Q |
7 |
ggacatcatcaaaccttaaagcagcgttataccagattatgtgcatgaggaccatgatatctatttaattg |
77 |
Q |
| |
|
|||||||| |||||| |||||||||||||||||||||||| ||||| |||| ||| |||| |||||||||| |
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|
| T |
37281514 |
ggacatcaacaaaccataaagcagcgttataccagattatatgcataaggatcataatatatatttaattg |
37281444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0894 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0894
Description:
Target: scaffold0894; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 66
Target Start/End: Original strand, 692 - 751
Alignment:
| Q |
7 |
ggacatcatcaaaccttaaagcagcgttataccagattatgtgcatgaggaccatgatat |
66 |
Q |
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|
|||||||| |||||| |||||||||||||||||| ||||||||||| |||| ||| |||| |
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| T |
692 |
ggacatcaacaaaccgtaaagcagcgttataccaaattatgtgcataaggatcataatat |
751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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