View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8342_low_1 (Length: 971)
Name: NF8342_low_1
Description: NF8342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8342_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 97; Significance: 4e-47; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 97; E-Value: 4e-47
Query Start/End: Original strand, 178 - 665
Target Start/End: Original strand, 5149953 - 5150443
Alignment:
| Q |
178 |
tagcacaacctataattaggaaatccagtcttattccttacaaattcaacattgacctaaggaggaacattgttgaaccaagaataagaag---aagtta |
274 |
Q |
| |
|
||||| |||||| |||||||||| || ||||||||| |||||||||||||||| |||| || ||| ||||||||||||||||||||||||| | |||| |
|
|
| T |
5149953 |
tagcaaaacctaaaattaggaaaacctgtcttattctttacaaattcaacattaacctgagaaggtacattgttgaaccaagaataagaaggcaaggtta |
5150052 |
T |
|
| Q |
275 |
agcctagattagctagttggtctgcacaatgattaccctcccgatatatatgcgagacattgaaattaaacctagacaagagaaacaaacaattatccca |
374 |
Q |
| |
|
| |||| ||||| || || ||||||||| |||||| || | |||||| || || ||||| ||||||||| |||| || | || | |||||| ||||| |
|
|
| T |
5150053 |
aacctaagttagcaagctgatctgcacaactattaccttctctatatatgtgagaaacattaaaattaaacatagataaaatgaatagacaattgtccca |
5150152 |
T |
|
| Q |
375 |
tctattccttaaggaccaaggaacaatttttgaagacttgaaagccaaaaagaccaacatggaatcagtttccaaccataagttatgccattctttgata |
474 |
Q |
| |
|
||||| |||| |||||||| || ||||| ||||||||||| ||||| || || | ||||||||| ||||||||||||| ||| ||||| | || | | |
|
|
| T |
5150153 |
cctatttcttagagaccaaggcactattttagaagacttgaacgccaataaaactagcatggaatccgtttccaaccataggttgtgccagttcttaaca |
5150252 |
T |
|
| Q |
475 |
tgagctatctctattgctaccatagctgttataagtttagaattcaatgcagatgtaactccaaggttgattgagaacgcccctaagaagtcagaatctg |
574 |
Q |
| |
|
||||| || || |||||||||||||||| |||||||| ||| | | |||| | ||||| | ||| | ||||| || |||| || || | ||||| |
|
|
| T |
5150253 |
tgagcaatttcaattgctaccatagctgctataagttcagagtgaagagcagtagagactcccaagttaacggagaaagctcctagaaaatctgcatctg |
5150352 |
T |
|
| Q |
575 |
aatttctaaagattcccccacaagctgcaagacctggatttccatgagctgcaccatcagtgttgcactttacccaattgaaaataggagg |
665 |
Q |
| |
|
| |||||||| ||||| ||||||||||| | || ||||| || || ||||| || |||||||| ||||| |||||||| ||||| ||||| |
|
|
| T |
5150353 |
agtttctaaaaattcctccacaagctgccaagcccggattaccctgcgctgccccgtcagtgttacacttaacccaattaaaaattggagg |
5150443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 71; Significance: 1e-31; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 187 - 548
Target Start/End: Original strand, 26448371 - 26448735
Alignment:
| Q |
187 |
ctataattaggaaatccagtcttattccttacaaattcaacattgacctaaggaggaacattgttgaaccaagaataagaag---aagttaagcctagat |
283 |
Q |
| |
|
|||||||| ||||| | ||||| ||||| |||||||||||||| |||| |||||| | | ||||||||||||||||||||| |||||| |||| || |
|
|
| T |
26448371 |
ctataattcggaaagtctgtcttgttcctaacaaattcaacattaacctgaggaggtatagtgttgaaccaagaataagaaggcaaagttagacctaaat |
26448470 |
T |
|
| Q |
284 |
tagctagttggtctgcacaatgattaccctcccgatatatatgcgagacattgaaattaaacctagacaagagaaacaaacaattatcccatctattcct |
383 |
Q |
| |
|
| | ||||| |||||||||||||| || |||| ||||||||| ||||| || || |||||||| | || ||||| | ||||||||||||||| || || |
|
|
| T |
26448471 |
tgacaagttgatctgcacaatgattgccttccctatatatatgagagaccttaaagttaaacctgcataaaagaaagagacaattatcccatctgtttct |
26448570 |
T |
|
| Q |
384 |
taaggaccaaggaacaatttttgaagacttgaaagccaaaaagaccaacatggaatcagtttccaaccataagttatgccattctttgatatgagctatc |
483 |
Q |
| |
|
|| |||||||||||||| || || || || |||||||| || || | |||||| || |||||||||||||||| ||| | ||||| || ||||| |
|
|
| T |
26448571 |
tagagaccaaggaacaatcttagatgatttaaaagccaagaaaacaagcatggagtctaattccaaccataagttaatccaatttttgacatctgctatt |
26448670 |
T |
|
| Q |
484 |
tctattgctaccatagctgttataagtttagaattcaatgcagatgtaactccaaggttgattga |
548 |
Q |
| |
|
|| || || |||||||||| |||| |||||| || || ||||| || | |||||| || ||||| |
|
|
| T |
26448671 |
tcaatagccaccatagctgcaataaatttagagtttaaagcagaagtgattccaagattaattga |
26448735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 367 - 501
Target Start/End: Complemental strand, 16187283 - 16187149
Alignment:
| Q |
367 |
ttatcccatctattccttaaggaccaaggaacaatttttgaagacttgaaagccaaaaagaccaacatggaatcagtttccaaccataagt-tatgccat |
465 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| || |||||||| ||||| | ||| || ||||| ||||| ||||| ||||| |||| ||||||| |
|
|
| T |
16187283 |
ttatcccatctattccttaaactccaaggaacaatcttagaagacttaaaagctagaaaaactaacattgaatctgtttctaacca-aagtctatgccaa |
16187185 |
T |
|
| Q |
466 |
tctttgatatgagctatctctattgctaccatagct |
501 |
Q |
| |
|
| ||||||||||||||||| ||||| ||||||||| |
|
|
| T |
16187184 |
ttgttgatatgagctatctcaattgccaccatagct |
16187149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 357 - 423
Target Start/End: Complemental strand, 6642983 - 6642917
Alignment:
| Q |
357 |
aaacaaacaattatcccatctattccttaaggaccaaggaacaatttttgaagacttgaaagccaaa |
423 |
Q |
| |
|
||||| |||||| ||||||||||| ||||| ||||||||| |||||| |||||||||| |||||| |
|
|
| T |
6642983 |
aaacagacaattttcccatctatttcttaactgccaaggaactatttttaaagacttgaaggccaaa |
6642917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 1e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 14721999 - 14722044
Alignment:
| Q |
1 |
tttgctaaccccactaaatttgaccatctatgaacatcactttaca |
46 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14721999 |
tttgctaaccccactaaatttgaccatctatgaacatcactttaca |
14722044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 291 - 445
Target Start/End: Complemental strand, 37926979 - 37926825
Alignment:
| Q |
291 |
ttggtctgcacaatgattaccctcccgatatatatgcgagacattgaaattaaacctagacaagagaaacaaacaattatcccatctattccttaaggac |
390 |
Q |
| |
|
|||||||||| |||||||||| |||| ||| ||||| || |||| || |||| |||||||| | | |||||||||||| ||||||||||| | || |
|
|
| T |
37926979 |
ttggtctgcataatgattaccttccctataaatatgagacacatgaaacctaaatctagacaaaatatgcaaacaattatctcatctattcctaagacac |
37926880 |
T |
|
| Q |
391 |
caaggaacaatttttgaagacttgaaagccaaaaagaccaacatggaatcagttt |
445 |
Q |
| |
|
||| |||| || || | |||||||| ||||| || || |||||||| ||||||| |
|
|
| T |
37926879 |
caatgaactatcttaggtgacttgaatgccaagaaaactaacatggagtcagttt |
37926825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University