View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8342_low_2 (Length: 342)
Name: NF8342_low_2
Description: NF8342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8342_low_2 |
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| [»] scaffold0060 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 19 - 331
Target Start/End: Original strand, 2322549 - 2322861
Alignment:
| Q |
19 |
agattagaatttgttagttagttagacaaagttagttacaattaacagaaacagttatgcttaacaaaagttttgcattgatcaaaattaataatattta |
118 |
Q |
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| T |
2322549 |
agattagaatttgttagttagttagacaaagttagttacaattaacagaaacagttatgcttaacaaaagttttgcattgatcaaaattaataatattta |
2322648 |
T |
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| Q |
119 |
cttcattttgtgggcccacgggtttgtttttaagaatttagtagtataaagtgaaaggagttaaactttcttattagtttgcactctcaattagtcttct |
218 |
Q |
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| T |
2322649 |
cttcattttgtgggcccacgggtttgtttttaagaatttagtagtataaagtgaaaggagttaaactttcttattagtttgcactctcaattagtcttct |
2322748 |
T |
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| Q |
219 |
gttattctgttccatttccatagaagtcatagaaacgtccaatccacattgtgctatttttcttgattcaccactgatctggtatgtcatcttcaccttc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2322749 |
gttattctgttccatttccatagaagtcatagaaacgtccaatccacattgtgctatttttcttgattcaccactgatctggtatgtcatcttcaccttc |
2322848 |
T |
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| Q |
319 |
aactattcttctt |
331 |
Q |
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| T |
2322849 |
aactattcttctt |
2322861 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 163 - 239
Target Start/End: Complemental strand, 21219264 - 21219188
Alignment:
| Q |
163 |
tataaagtgaaaggagttaaactttcttattagtttgcactctcaattagtcttctgttattctgttccatttccat |
239 |
Q |
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| T |
21219264 |
tataaagtgaatgtaattgaagtttcttattagtttttagactcaattagtcttctgctattctgttccatttccat |
21219188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 179 - 231
Target Start/End: Complemental strand, 21306295 - 21306243
Alignment:
| Q |
179 |
ttaaactttcttattagtttgcactctcaattagtcttctgttattctgttcc |
231 |
Q |
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| T |
21306295 |
ttaaaatttcttattagtttgtactctaaattagtcttctgctattctgttcc |
21306243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 190 - 237
Target Start/End: Complemental strand, 44729446 - 44729399
Alignment:
| Q |
190 |
tattagtttgcactctcaattagtcttctgttattctgttccatttcc |
237 |
Q |
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| T |
44729446 |
tattagtttgaactctctattagtcttctgctattctgttccatttcc |
44729399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 209
Target Start/End: Original strand, 22423 - 22469
Alignment:
| Q |
163 |
tataaagtgaaaggagttaaactttcttattagtttgcactctcaat |
209 |
Q |
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| T |
22423 |
tataaagtgaaagtagttaaacttacttattagattgtactctcaat |
22469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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