View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8343_high_3 (Length: 273)

Name: NF8343_high_3
Description: NF8343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8343_high_3
NF8343_high_3
[»] chr2 (8 HSPs)
chr2 (1-273)||(8413772-8414045)
chr2 (166-243)||(8435701-8435778)
chr2 (42-162)||(14296254-14296374)
chr2 (42-157)||(18693110-18693225)
chr2 (46-162)||(31092320-31092436)
chr2 (45-162)||(18811704-18811821)
chr2 (185-244)||(8377756-8377815)
chr2 (43-162)||(37344623-37344742)
[»] chr3 (5 HSPs)
chr3 (1-163)||(16893080-16893242)
chr3 (81-157)||(35526596-35526672)
chr3 (46-157)||(29346807-29346918)
chr3 (72-162)||(51524871-51524961)
chr3 (66-163)||(31067178-31067276)
[»] chr1 (9 HSPs)
chr1 (42-162)||(49491876-49491995)
chr1 (44-162)||(50903480-50903598)
chr1 (46-163)||(13061962-13062079)
chr1 (45-163)||(3374306-3374424)
chr1 (72-142)||(34566273-34566343)
chr1 (45-163)||(41035024-41035142)
chr1 (73-162)||(17114741-17114830)
chr1 (75-163)||(19394156-19394244)
chr1 (75-141)||(39332359-39332425)
[»] chr7 (2 HSPs)
chr7 (42-162)||(26449532-26449652)
chr7 (73-157)||(19407870-19407954)
[»] chr4 (5 HSPs)
chr4 (42-157)||(24239839-24239954)
chr4 (43-155)||(16832137-16832249)
chr4 (73-163)||(37050003-37050094)
chr4 (43-116)||(18522296-18522369)
chr4 (43-163)||(16593766-16593886)
[»] chr6 (4 HSPs)
chr6 (42-157)||(4263365-4263480)
chr6 (42-162)||(25167847-25167967)
chr6 (71-162)||(10990028-10990119)
chr6 (42-162)||(3949338-3949458)
[»] scaffold0531 (1 HSPs)
scaffold0531 (43-163)||(10262-10382)
[»] chr8 (4 HSPs)
chr8 (43-157)||(8831219-8831333)
chr8 (41-162)||(27786782-27786903)
chr8 (46-162)||(29369107-29369223)
chr8 (48-162)||(36206422-36206536)
[»] chr5 (5 HSPs)
chr5 (41-162)||(36868296-36868417)
chr5 (46-157)||(19215391-19215502)
chr5 (42-122)||(36150641-36150721)
chr5 (42-162)||(788271-788391)
chr5 (42-134)||(32278702-32278794)


Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 8413772 - 8414045
Alignment:
Q  1 atggcagaagctactagcttaacacccaggttcacaaagatttgaaccaactattcagtatatggcaagacagctttggaggtatccttttaagcacggg 100  Q
    |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||    
T  8413772 atggcagaagctactagcttaacaaccatgttcacaaagatttgaaccaactattcagtatatggcaggacagctttggaggtacccttttgagcacggg 8413871  T
Q  101 tcctcattccggctgagttgaagctagtaggcttcactttgttcgcctgcttcttctgcttttcacaatggaaacaagcatgtcaacctaaaaagtgcaa 200  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  8413872 tcctcattccggttgagttgaagctagtaggcttcactttgttcgcctgcttcttctgctttttgcaatggaaacaagcatgtcaacctaaaaagtgcaa 8413971  T
Q  201 agaggataccaacctaaatttaaagcaatccactatcaaattca-aactgttgtcaattaaaaaactatcaact 273  Q
    |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||||||||||||||    
T  8413972 agaggataccaacctaaatttaaagcaatccactttcaaattcagaactgttgtcaaataaaaaactatcaact 8414045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 166 - 243
Target Start/End: Original strand, 8435701 - 8435778
Alignment:
Q  166 caatggaaacaagcatgtcaacctaaaaagtgcaaagaggataccaacctaaatttaaagcaatccactatcaaattc 243  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8435701 caatggaaacaagcatgtcaacctaaaaagtgcaaagaggataccaacctaaatttaaagcaatccactatcaaattc 8435778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 42 - 162
Target Start/End: Original strand, 14296254 - 14296374
Alignment:
Q  42 ttgaaccaactattcagtatatggcaagacagctttggaggtatccttttaagcacgggtcctcattccggctgagttgaagctagtaggcttcactttg 141  Q
    ||||||||||||||  |||| || |||| || ||||||||||| ||||||   |||| || ||||||||||||||||| |||||||||||||||| ||||    
T  14296254 ttgaaccaactattatgtatctgccaaggcatctttggaggtacccttttggacacgagtgctcattccggctgagttaaagctagtaggcttcattttg 14296353  T
Q  142 ttcgcctgcttcttctgcttt 162  Q
    |||  ||||||||||| ||||    
T  14296354 ttcatctgcttcttcttcttt 14296374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 42 - 157
Target Start/End: Complemental strand, 18693225 - 18693110
Alignment:
Q  42 ttgaaccaactattcagtatatggcaagacagctttggaggtatccttttaagcacgggtcctcattccggctgagttgaagctagtaggcttcactttg 141  Q
    ||||||||||||||  |||| || ||||||| ||||||||| | ||||||| |||| |||||||||||||||| |||| ||||||| || ||||||||||    
T  18693225 ttgaaccaactattttgtatctgtcaagacaactttggaggaacccttttaggcacaggtcctcattccggcttagttaaagctagcagacttcactttg 18693126  T
Q  142 ttcgcctgcttcttct 157  Q
    || ||  |||||||||    
T  18693125 tttgcacgcttcttct 18693110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 46 - 162
Target Start/End: Complemental strand, 31092436 - 31092320
Alignment:
Q  46 accaactattcagtatatggcaagacagctttggaggtatccttttaagcacgggtcctcattccggctgagttgaagctagtaggcttcactttgttcg 145  Q
    ||||||||||| |||| |||||||||  ||||||||||| ||||||  ||||| |||||||||||||||||||| || |||| |||| ||||||| |||     
T  31092436 accaactattctgtatctggcaagacgactttggaggtacccttttgggcacgagtcctcattccggctgagttaaatctagaaggcatcactttattca 31092337  T
Q  146 cctgcttcttctgcttt 162  Q
    | || ||||||| ||||    
T  31092336 cgtgattcttcttcttt 31092320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 45 - 162
Target Start/End: Original strand, 18811704 - 18811821
Alignment:
Q  45 aaccaactattcagtatatggcaagacagctttggaggtatccttttaagcacgggtcctcattccggctgagttgaagctagtaggcttcactttgttc 144  Q
    |||||||||||| |||| || ||||  |||||||||||   ||||||  |||||||||||||||||||||||||| ||||||  | |||||||||| | |    
T  18811704 aaccaactattctgtatctgtcaaggtagctttggaggagcccttttgggcacgggtcctcattccggctgagttaaagctataaagcttcactttatgc 18811803  T
Q  145 gcctgcttcttctgcttt 162  Q
     |||||||||||| ||||    
T  18811804 acctgcttcttcttcttt 18811821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 185 - 244
Target Start/End: Complemental strand, 8377815 - 8377756
Alignment:
Q  185 aacctaaaaagtgcaaagaggataccaacctaaatttaaagcaatccactatcaaattca 244  Q
    |||||||||||| ||||||||||| ||||||||||||||| |||||||| ||||||||||    
T  8377815 aacctaaaaagtccaaagaggatatcaacctaaatttaaaccaatccaccatcaaattca 8377756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 43 - 162
Target Start/End: Complemental strand, 37344742 - 37344623
Alignment:
Q  43 tgaaccaactattcagtatatggcaagacagctttggaggtatccttttaagcacgggtcctcattccggctgagttgaagctagtaggcttcactttgt 142  Q
    |||| ||||||||  ||||||| |||| | ||||||||| || ||||||  |||||  ||||||||||||||||||| || |||| | | ||||||||||    
T  37344742 tgaatcaactattatgtatatgtcaaggcggctttggagatacccttttgggcacgaatcctcattccggctgagttaaaactagaatgattcactttgt 37344643  T
Q  143 tcgcctgcttcttctgcttt 162  Q
    || |||| ||||||| ||||    
T  37344642 tcacctgtttcttcttcttt 37344623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 127; Significance: 1e-65; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 16893242 - 16893080
Alignment:
Q  1 atggcagaagctactagcttaacacccaggttcacaaagatttgaaccaactattcagtatatggcaagacagctttggaggtatccttttaagcacggg 100  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||||||| | |||||| ||||||||    
T  16893242 atggcagaagctactagcttaacacccaggttcacagagatttgaaccaactattcggtatatggcaaggcagctttggaggcacccttttgagcacggg 16893143  T
Q  101 tcctcattccggctgagttgaagctagtaggcttcactttgttcgcctgcttcttctgctttt 163  Q
    |||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||    
T  16893142 tcctcattccggctgagttgaacctagtaggcttcactttgttcacctgcttcttttgctttt 16893080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 81 - 157
Target Start/End: Original strand, 35526596 - 35526672
Alignment:
Q  81 ggtatccttttaagcacgggtcctcattccggctgagttgaagctagtaggcttcactttgttcgcctgcttcttct 157  Q
    |||| ||||||  |||||||||||||||||||| ||||| ||||||| |||| ||||||||||| ||||||||||||    
T  35526596 ggtacccttttgggcacgggtcctcattccggccgagttaaagctagaaggcatcactttgttcacctgcttcttct 35526672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 46 - 157
Target Start/End: Complemental strand, 29346918 - 29346807
Alignment:
Q  46 accaactattcagtatatggcaagacagctttggaggtatccttttaagcacgggtcctcattccggctgagttgaagctagtaggcttcactttgttcg 145  Q
    ||||||||||  |||| || |||| | ||||||||||||  |||||  ||||||||||||||||||||| |||| ||||||  |||| |||| ||||||     
T  29346918 accaactattatgtatctgtcaaggcggctttggaggtactcttttgtgcacgggtcctcattccggctaagttaaagctataaggcatcacgttgttca 29346819  T
Q  146 cctgcttcttct 157  Q
    ||||||||||||    
T  29346818 cctgcttcttct 29346807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 72 - 162
Target Start/End: Complemental strand, 51524961 - 51524871
Alignment:
Q  72 agctttggaggtatccttttaagcacgggtcctcattccggctgagttgaagctagtaggcttcactttgttcgcctgcttcttctgcttt 162  Q
    |||||||||||   ||||||  |||||||||||||||||||||||||| ||||||  |||| ||||||| | | |||||||||||| ||||    
T  51524961 agctttggaggagcccttttgggcacgggtcctcattccggctgagttaaagctataaggcctcactttatgcacctgcttcttcttcttt 51524871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 163
Target Start/End: Complemental strand, 31067276 - 31067178
Alignment:
Q  66 caagacagctttggaggtatccttttaagcacgggtcctcatt-ccggctgagttgaagctagtaggcttcactttgttcgcctgcttcttctgctttt 163  Q
    ||||||||  |||||| ||  |||||| ||||||||||||||| ||| ||||||| ||||||| | || ||||||||| | | |||||||||| |||||    
T  31067276 caagacaggattggagttacacttttaggcacgggtcctcattcccgactgagttaaagctagcaagcctcactttgtgcacatgcttcttcttctttt 31067178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 42 - 162
Target Start/End: Original strand, 49491876 - 49491995
Alignment:
Q  42 ttgaaccaactattcagtatatggcaagacagctttggaggtatccttttaagcacgggtcctcattccggctgagttgaagctagtaggcttcactttg 141  Q
    ||||||||||||||| ||||| | |||| || ||||||||||| ||||||  ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  49491876 ttgaaccaactattcggtatacgccaaggcaactttggaggtacccttttgggcacgggtcctcattccggctgagttgaagctagtaggc-tcactttg 49491974  T
Q  142 ttcgcctgcttcttctgcttt 162  Q
    ||| | |||||||||||||||    
T  49491975 ttcacatgcttcttctgcttt 49491995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 44 - 162
Target Start/End: Original strand, 50903480 - 50903598
Alignment:
Q  44 gaaccaactattcagtatatggcaagacagctttggaggtatccttttaagcacgggtcctcattccggctgagttgaagctagtaggcttcactttgtt 143  Q
    |||||||||| || ||||||| |||| | |||||||||||| |  |||  ||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  50903480 gaaccaactaatcggtatatgccaagtcggctttggaggtaccgctttgggcacgggtcctcatttcggctgagttgaagctagtaggcttcactttgtt 50903579  T
Q  144 cgcctgcttcttctgcttt 162  Q
    | |||||||||||||||||    
T  50903580 cacctgcttcttctgcttt 50903598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 46 - 163
Target Start/End: Original strand, 13061962 - 13062079
Alignment:
Q  46 accaactattcagtatatggcaagacagctttggaggtatccttttaagcacgggtcctcattccggctgagttgaagctagtaggcttcactttgttcg 145  Q
    ||||| ||||| |||| || |||| | ||||||||||||  ||||| |||||||||||||||| |||||||||| ||||||  |||| |||||||||||     
T  13061962 accaattattctgtatttgtcaaggcggctttggaggtactcttttcagcacgggtcctcatttcggctgagttaaagctaaaaggcatcactttgttca 13062061  T
Q  146 cctgcttcttctgctttt 163  Q
    |||||||||||| |||||    
T  13062062 cctgcttcttcttctttt 13062079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 45 - 163
Target Start/End: Complemental strand, 3374424 - 3374306
Alignment:
Q  45 aaccaactattcagtatatggcaagacagctttggaggtatccttttaagcacgggtcctcattccggctgagttgaagctagtaggcttcactttgttc 144  Q
    |||||||||||| |||  |  |||| ||||||||||| || ||||||  ||||  |||||||||||||||||||| || ||||  |||||||||||||||    
T  3374424 aaccaactattctgtagcttccaaggcagctttggagctacccttttgggcacatgtcctcattccggctgagttaaatctagccggcttcactttgttc 3374325  T
Q  145 gcctgcttcttctgctttt 163  Q
     | |||||||||| |||||    
T  3374324 acttgcttcttcttctttt 3374306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 72 - 142
Target Start/End: Original strand, 34566273 - 34566343
Alignment:
Q  72 agctttggaggtatccttttaagcacgggtcctcattccggctgagttgaagctagtaggcttcactttgt 142  Q
    |||||||| | || |||||||| |||| ||||||||||| ||||||||||||||||||| |||||||||||    
T  34566273 agctttggggatacccttttaaacacgagtcctcattccagctgagttgaagctagtagacttcactttgt 34566343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 45 - 163
Target Start/End: Original strand, 41035024 - 41035142
Alignment:
Q  45 aaccaactattcagtatatggcaagacagctttggaggtatccttttaagcacgggtcctcattccggctgagttgaagctagtaggcttcactttgttc 144  Q
    |||||||||||||| || || ||||  |||||||||||   | ||||  |||||||||||||||||||||||||| ||||||| ||||||||   | |||    
T  41035024 aaccaactattcagaatttgccaaggtagctttggaggagcctttttgggcacgggtcctcattccggctgagttaaagctagaaggcttcaaaatattc 41035123  T
Q  145 gcctgcttcttctgctttt 163  Q
     |||||||||||| |||||    
T  41035124 acctgcttcttcttctttt 41035142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 162
Target Start/End: Original strand, 17114741 - 17114830
Alignment:
Q  73 gctttggaggtatccttttaagcacgggtcctcattccggctgagttgaagctagtaggcttcactttgttcgcctgcttcttctgcttt 162  Q
    |||||||||||| ||||||   || |||||||||||| ||| ||||| ||||||| |||||||||||||||| | || ||||||| ||||    
T  17114741 gctttggaggtacccttttggacatgggtcctcattctggcagagttaaagctagcaggcttcactttgttcacatgtttcttcttcttt 17114830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 75 - 163
Target Start/End: Original strand, 19394156 - 19394244
Alignment:
Q  75 tttggaggtatccttttaagcacgggtcctcattccggctgagttgaagctagtaggcttcactttgttcgcctgcttcttctgctttt 163  Q
    |||| ||||| ||||||  ||||||||||||||||| ||| |||| |||| || ||||||||||||| || | |||||||||| |||||    
T  19394156 tttgaaggtacccttttgggcacgggtcctcattccagctaagttaaagcaagaaggcttcactttgctcacatgcttcttcttctttt 19394244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 141
Target Start/End: Complemental strand, 39332425 - 39332359
Alignment:
Q  75 tttggaggtatccttttaagcacgggtcctcattccggctgagttgaagctagtaggcttcactttg 141  Q
    |||| ||||| ||||||  ||||||||||||||| |||||||||| |||| || |||||||||||||    
T  39332425 tttgaaggtacccttttgggcacgggtcctcatttcggctgagttaaagcaagcaggcttcactttg 39332359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 42 - 162
Target Start/End: Original strand, 26449532 - 26449652
Alignment:
Q  42 ttgaaccaactattcagtatatggcaagacagctttggaggtatccttttaagcacgggtcctcattccggctgagttgaagctagtaggcttcactttg 141  Q
    ||||||||||||||  ||||||| | || ||| |||||||||| ||||||   |||| |||||||||||||||||| |||||||||||||||||||| ||    
T  26449532 ttgaaccaactatttggtatatgtcgaggcagttttggaggtacccttttggacacgagtcctcattccggctgagctgaagctagtaggcttcactctg 26449631  T
Q  142 ttcgcctgcttcttctgcttt 162  Q
    ||| |||||||||||||||||    
T  26449632 ttcacctgcttcttctgcttt 26449652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 73 - 157
Target Start/End: Original strand, 19407870 - 19407954
Alignment:
Q  73 gctttggaggtatccttttaagcacgggtcctcattccggctgagttgaagctagtaggcttcactttgttcgcctgcttcttct 157  Q
    |||||||||||| ||||||  |||||||||||||||||||||||||| ||||||| |||  ||||||||||| ||||||||||||    
T  19407870 gctttggaggtacccttttgggcacgggtcctcattccggctgagttaaagctagaaggaatcactttgttcacctgcttcttct 19407954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 42 - 157
Target Start/End: Original strand, 24239839 - 24239954
Alignment:
Q  42 ttgaaccaactattcagtatatggcaagacagctttggaggtatccttttaagcacgggtcctcattccggctgagttgaagctagtaggcttcactttg 141  Q
    |||| |||||||||  |||| || ||||| |||||| |||||| ||||||  |||||||||||||||||||||||||| ||||||||||||||||||||     
T  24239839 ttgagccaactattatgtatctgccaagatagcttttgaggtacccttttgggcacgggtcctcattccggctgagttaaagctagtaggcttcacttta 24239938  T
Q  142 ttcgcctgcttcttct 157  Q
    ||| ||| ||||||||    
T  24239939 ttcacctacttcttct 24239954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 43 - 155
Target Start/End: Original strand, 16832137 - 16832249
Alignment:
Q  43 tgaaccaactattcagtatatggcaagacagctttggaggtatccttttaagcacgggtcctcattccggctgagttgaagctagtaggcttcactttgt 142  Q
    |||||| ||||||  |||| || ||||||||||||||||| | |||||| | |||| |||||||||||  ||||||| ||| ||||||||||||||||||    
T  16832137 tgaaccgactattatgtatctgccaagacagctttggaggcacccttttgaacacgtgtcctcattccaactgagttaaagttagtaggcttcactttgt 16832236  T
Q  143 tcgcctgcttctt 155  Q
    || | ||||||||    
T  16832237 tcacatgcttctt 16832249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 73 - 163
Target Start/End: Complemental strand, 37050094 - 37050003
Alignment:
Q  73 gctttggaggtatccttttaagcacgggtcctcattccggctgagttgaagctag-taggcttcactttgttcgcctgcttcttctgctttt 163  Q
    |||||||||||| ||||||  ||||| |||||||||||||||||||| || ||||  |||||||||||||||| | || ||||||| |||||    
T  37050094 gctttggaggtacccttttgggcacgagtcctcattccggctgagttaaaactagaaaggcttcactttgttcacatgtttcttcttctttt 37050003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 116
Target Start/End: Original strand, 18522296 - 18522369
Alignment:
Q  43 tgaaccaactattcagtatatggcaagacagctttggaggtatccttttaagcacgggtcctcattccggctga 116  Q
    ||||||||||||||  ||| || |||| |  ||||||||| |||||||| ||||||| ||||||||||||||||    
T  18522296 tgaaccaactattctatatctgccaagtcgactttggaggcatccttttgagcacggatcctcattccggctga 18522369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 163
Target Start/End: Original strand, 16593766 - 16593886
Alignment:
Q  43 tgaaccaactattcagtatatggcaagacagctttggaggtatccttttaagcacgggtcctcattccggctgagttgaagctagtaggcttcactttgt 142  Q
    |||||||||||||  |||  || ||||||| |||||| | ||  |||||  |||||||| |||||||||||| |||| || |||| |||| |||||||||    
T  16593766 tgaaccaactattatgtagctgccaagacaactttggcgttactcttttgggcacgggttctcattccggctaagttaaaactagcaggcctcactttgt 16593865  T
Q  143 tcgcctgcttcttctgctttt 163  Q
     | | ||||||| || |||||    
T  16593866 gcacgtgcttctacttctttt 16593886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 42 - 157
Target Start/End: Original strand, 4263365 - 4263480
Alignment:
Q  42 ttgaaccaactattcagtatatggcaagacagctttggaggtatccttttaagcacgggtcctcattccggctgagttgaagctagtaggcttcactttg 141  Q
    ||||||||||||||| |||| || |||||||  |||||||| | |||||| ||||||||||||||||||||||||||| || |||| |||||||| ||||    
T  4263365 ttgaaccaactattccgtatctgccaagacaattttggaggaacccttttgagcacgggtcctcattccggctgagttaaaactagcaggcttcattttg 4263464  T
Q  142 ttcgcctgcttcttct 157  Q
    ||  | ||||||||||    
T  4263465 tttacatgcttcttct 4263480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 42 - 162
Target Start/End: Complemental strand, 25167967 - 25167847
Alignment:
Q  42 ttgaaccaactattcagtatatggcaagacagctttggaggtatccttttaagcacgggtcctcattccggctgagttgaagctagtaggcttcactttg 141  Q
    ||||||||||||||| |||| || |||| | |||||||||||| ||||||  ||| | |||||| ||||||||||||| || |||| |||||||||||||    
T  25167967 ttgaaccaactattctgtatctgtcaaggcggctttggaggtacccttttgggcatgagtcctctttccggctgagttaaaactagaaggcttcactttg 25167868  T
Q  142 ttcgcctgcttcttctgcttt 162  Q
    ||| | || ||||||| ||||    
T  25167867 ttcacatgtttcttcttcttt 25167847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 71 - 162
Target Start/End: Complemental strand, 10990119 - 10990028
Alignment:
Q  71 cagctttggaggtatccttttaagcacgggtcctcattccggctgagttgaagctagtaggcttcactttgttcgcctgcttcttctgcttt 162  Q
    |||||||||||| | ||||||  ||||| ||||||||| ||||| |||| ||||||| ||| |||||||||||| | |||| ||||| ||||    
T  10990119 cagctttggaggaacccttttgtgcacgagtcctcatttcggctaagttaaagctagaaggattcactttgttctcttgctgcttcttcttt 10990028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 162
Target Start/End: Complemental strand, 3949458 - 3949338
Alignment:
Q  42 ttgaaccaactattcagtatatggcaagacagctttggaggtatccttttaagcacgggtcctcattccggctgagttgaagctagtaggcttcactttg 141  Q
    ||||| ||||||||| | || || |||| | |||||||||||| |||| | | |||| |||||||||| |||| |||| || |||  | ||||||||||     
T  3949458 ttgaatcaactattctgcatctgtcaaggcggctttggaggtacccttctgaacacgagtcctcattctggctcagttaaaactaaaaagcttcacttta 3949359  T
Q  142 ttcgcctgcttcttctgcttt 162  Q
    ||| |||| ||||||| ||||    
T  3949358 ttcacctgtttcttcttcttt 3949338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0531 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0531
Description:

Target: scaffold0531; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 43 - 163
Target Start/End: Complemental strand, 10382 - 10262
Alignment:
Q  43 tgaaccaactattcagtatatggcaagacagctttggaggtatccttttaagcacgggtcctcattccggctgagttgaagctagtaggcttcactttgt 142  Q
    |||||||||||||  |||  || |||||||||||||||| ||  |||||| |||||||||||||||||||||||||| || |||| |||| |||||||||    
T  10382 tgaaccaactattatgtagctgccaagacagctttggagttactcttttaggcacgggtcctcattccggctgagttaaaactagcaggcctcactttgt 10283  T
Q  143 tcgcctgcttcttctgctttt 163  Q
     | | |||||||||| |||||    
T  10282 gcacgtgcttcttcttctttt 10262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 43 - 157
Target Start/End: Original strand, 8831219 - 8831333
Alignment:
Q  43 tgaaccaactattcagtatatggcaagacagctttggaggtatccttttaagcacgggtcctcattccggctgagttgaagctagtaggcttcactttgt 142  Q
    ||||| ||||||||||||  || | ||||| |||||||| ||  ||||| ||||||||||||||||||||||||||| ||||||| |||| |||||||||    
T  8831219 tgaactaactattcagtagctgtcgagacaactttggagttacacttttgagcacgggtcctcattccggctgagttaaagctagcaggcctcactttgt 8831318  T
Q  143 tcgcctgcttcttct 157  Q
    ||   ||||||||||    
T  8831319 tcatgtgcttcttct 8831333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 41 - 162
Target Start/End: Original strand, 27786782 - 27786903
Alignment:
Q  41 tttgaaccaactattcagtatatggcaagacagctttggaggtatccttttaagcacgggtcctcattccggctgagttgaagctagtaggcttcacttt 140  Q
    |||||||||||||||  |||| || ||||  ||||||||||| | | ||||  |||||| ||||||||||||||||||| ||||||| ||||||||||||    
T  27786782 tttgaaccaactattttgtatctgtcaaggtagctttggaggaaccattttgggcacggctcctcattccggctgagttaaagctagaaggcttcacttt 27786881  T
Q  141 gttcgcctgcttcttctgcttt 162  Q
     |||  |||||| |||| ||||    
T  27786882 attcatctgcttattcttcttt 27786903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 46 - 162
Target Start/End: Complemental strand, 29369223 - 29369107
Alignment:
Q  46 accaactattcagtatatggcaagacagctttggaggtatccttttaagcacgggtcctcattccggctgagttgaagctagtaggcttcactttgttcg 145  Q
    ||||||||||| |||| || |||| | | |||||| ||||||||||  |||||||||||||||| |||| |||| ||||| | |||| ||||||| |||     
T  29369223 accaactattctgtatctgccaaggcggatttggatgtatccttttgggcacgggtcctcattctggctcagttaaagcttgaaggcatcactttattca 29369124  T
Q  146 cctgcttcttctgcttt 162  Q
    | |||||||||| ||||    
T  29369123 cgtgcttcttcttcttt 29369107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 162
Target Start/End: Original strand, 36206422 - 36206536
Alignment:
Q  48 caactattcagtatatggcaagacagctttggaggtatccttttaagcacgggtcctcattccggctgagttgaagctagtaggcttcactttgttcgcc 147  Q
    |||||| ||| ||| || |||| || ||||||||| |  |||||| ||||| |||||||||||| || |||| ||||||| |||||||||||| |||       
T  36206422 caactagtcactatctgtcaaggcaactttggaggaactcttttaggcacgagtcctcattccgactaagttaaagctagaaggcttcactttattcatt 36206521  T
Q  148 tgcttcttctgcttt 162  Q
    |||||||||| ||||    
T  36206522 tgcttcttcttcttt 36206536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 41 - 162
Target Start/End: Complemental strand, 36868417 - 36868296
Alignment:
Q  41 tttgaaccaactattcagtatatggcaagacagctttggaggtatccttttaagcacgggtcctcattccggctgagttgaagctagtaggcttcacttt 140  Q
    |||||||||||||||  |||| || ||||  ||||||||||| | ||||||   |||||| |||||||||||||||||| ||||||| ||||||||||||    
T  36868417 tttgaaccaactattatgtatctgtcaaggtagctttggaggaacccttttggacacgggccctcattccggctgagttaaagctagaaggcttcacttt 36868318  T
Q  141 gttcgcctgcttcttctgcttt 162  Q
     ||| | |||||||||| ||||    
T  36868317 attcacttgcttcttcttcttt 36868296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 46 - 157
Target Start/End: Complemental strand, 19215502 - 19215391
Alignment:
Q  46 accaactattcagtatatggcaagacagctttggaggtatccttttaagcacgggtcctcattccggctgagttgaagctagtaggcttcactttgttcg 145  Q
    ||||||||||| |||| || |||| ||| |||| ||||| ||||||  || ||||||||||||| ||||||||| |||||||  ||| |||||||||||     
T  19215502 accaactattctgtatctgccaaggcagttttgaaggtacccttttgggctcgggtcctcattcgggctgagttaaagctagacggcatcactttgttca 19215403  T
Q  146 cctgcttcttct 157  Q
    ||||||||||||    
T  19215402 cctgcttcttct 19215391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 42 - 122
Target Start/End: Original strand, 36150641 - 36150721
Alignment:
Q  42 ttgaaccaactattcagtatatggcaagacagctttggaggtatccttttaagcacgggtcctcattccggctgagttgaa 122  Q
    |||| |||||||||  ||||||| | ||  ||||||||||||||||||||  ||||| |||||||||||||||||||||||    
T  36150641 ttgagccaactatttggtatatgccgaggtagctttggaggtatccttttgggcacgagtcctcattccggctgagttgaa 36150721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 42 - 162
Target Start/End: Original strand, 788271 - 788391
Alignment:
Q  42 ttgaaccaactattcagtatatggcaagacagctttggaggtatccttttaagcacgggtcctcattccggctgagttgaagctagtaggcttcactttg 141  Q
    ||||||||| |||||  |||||| |||| | |||||||||| | ||||||  ||||| ||||||||  || ||||||| ||| ||| |||||||| ||||    
T  788271 ttgaaccaattattctatatatgtcaaggcggctttggaggaacccttttgggcacgagtcctcatagcgtctgagttaaagttagaaggcttcattttg 788370  T
Q  142 ttcgcctgcttcttctgcttt 162  Q
    |||  ||||||||||| ||||    
T  788371 ttcatctgcttcttcttcttt 788391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 134
Target Start/End: Original strand, 32278702 - 32278794
Alignment:
Q  42 ttgaaccaactattcagtatatggcaagacagctttggaggtatccttttaagcacgggtcctcattccggctgagttgaagctagtaggctt 134  Q
    ||||||| ||||||| |||| || |||| | |||||||||||| ||||||  | |||  || |||||||||||||||| || |||| ||||||    
T  32278702 ttgaacccactattctgtatctgtcaaggcggctttggaggtacccttttgggaacgaatcttcattccggctgagttaaaactagaaggctt 32278794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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